Quantum entanglement, resulting in correlations between subsystems that are stronger than any possible classical correlation, is one of the mysteries of quantum mechanics. Entanglement cannot be increased by any local operation, and for a sufficiently large many-body quantum system there exist infinitely many different entanglement classes, i.e., states that are not related by stochastic local operations and classical communications. On the other hand, the method of entanglement polytopes results in finitely many coarse-grained types of entanglement that can be detected by only measuring single-particle spectra. We find, however, that with high probability the local spectra lie in more than one polytope, hence providing only partial information about the entanglement type. To overcome this problem, we propose to additionally use so-called local filters, which are non-unitary local operations. We experimentally demonstrate the detection of entanglement polytopes in a four-qubit system. Using local filters we can distinguish the entanglement type of states with the same single particle spectra, but which belong to different polytopes.