This page contains information for Module074, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G023863 | Module074 | ||||||
GRMZM2G005365 | Module074 | AT5G65740 | AT5G65740 | zinc ion binding | |||
GRMZM2G046117 | Module074 | AT1G32900 | GBSS1 | granule bound starch synthase 1 | UDP-Glycosyltransferase superfamily protein | ||
GRMZM2G047546 | Module074 | AT5G51600 | PLE | PLEIADE | Microtubule associated protein (MAP65/ASE1) family protein | ||
GRMZM2G005640 | Module074 | AT5G58420 | AT5G58420 | Ribosomal protein S4 (RPS4A) family protein | |||
GRMZM2G054397 | Module074 | AT5G10260 | RABH1e | RAB GTPase homolog H1E | RAB GTPase homolog H1E | ||
GRMZM2G054678 | Module074 | AT4G00690 | ULP1B | UB-like protease 1B | UB-like protease 1B | ||
GRMZM2G009438 | Module074 | AT2G39830 | DAR2 | DA1-related protein 2 | DA1-related protein 2 | Orphans | |
GRMZM2G058655 | Module074 | AT1G48170 | AT1G48170 | ||||
GRMZM2G058896 | Module074 | ||||||
GRMZM2G067929 | Module074 | ||||||
GRMZM2G069905 | Module074 | ||||||
AC196156.3_FG003 | Module074 | AT1G67350 | AT1G67350 | ||||
GRMZM2G088375 | Module074 | ||||||
GRMZM2G090230 | glk41 | Module074 | AT1G14600 | AT1G14600 | Homeodomain-like superfamily protein | G2-like | |
GRMZM2G095519 | Module074 | ||||||
GRMZM2G076613 | Module074 | ||||||
GRMZM2G119941 | incw4 | Module074 | AT1G55120 | FRUCT5 | beta-fructofuranosidase 5 | beta-fructofuranosidase 5 | |
GRMZM2G125304 | umc1790a | Module074 | AT2G22360 | AT2G22360 | DNAJ heat shock family protein | ||
GRMZM2G075975 | Module074 | ||||||
GRMZM2G130305 | Module074 | AT3G47590 | AT3G47590 | alpha/beta-Hydrolases superfamily protein | |||
GRMZM2G149323 | Module074 | ||||||
GRMZM2G149289 | Module074 | AT3G17850 | AT3G17850 | Protein kinase superfamily protein | |||
GRMZM2G154041 | Module074 | AT2G39290 | PGP1 | phosphatidylglycerolphosphate synthase 1 | phosphatidylglycerolphosphate synthase 1 | ||
GRMZM2G016097 | Module074 | AT2G03870 | EMB2816 | EMBRYO DEFECTIVE 2816 | Small nuclear ribonucleoprotein family protein | ||
GRMZM2G163514 | Module074 | AT5G23570 | SGS3 | SUPPRESSOR OF GENE SILENCING 3 | XS domain-containing protein / XS zinc finger domain-containing protein-related | ||
GRMZM2G170420 | Module074 | AT5G58420 | AT5G58420 | Ribosomal protein S4 (RPS4A) family protein | |||
GRMZM2G305167 | Module074 | AT5G02120 | OHP | one helix protein | one helix protein | ||
GRMZM2G308365 | Module074 | AT1G66930 | AT1G66930 | Protein kinase superfamily protein | |||
GRMZM2G315088 | Module074 | AT3G49910 | AT3G49910 | Translation protein SH3-like family protein | |||
GRMZM2G392037 | Module074 | AT2G44120 | AT2G44120 | Ribosomal protein L30/L7 family protein | |||
GRMZM2G397785 | Module074 | AT3G46730 | AT3G46730 | NB-ARC domain-containing disease resistance protein | |||
GRMZM2G398781 | Module074 | ||||||
GRMZM2G329532 | Module074 | AT4G00170 | AT4G00170 | Plant VAMP (vesicle-associated membrane protein) family protein | |||
GRMZM2G440855 | Module074 | ||||||
GRMZM2G442763 | Module074 | AT4G37080 | AT4G37080 | Protein of unknown function, DUF547 | |||
GRMZM2G457697 | Module074 | AT5G10810 | ER | ENHANCER OF RUDIMENTARY HOMOLOGUE | enhancer of rudimentary protein, putative | ||
GRMZM2G483779 | Module074 | ||||||
GRMZM2G527472 | Module074 | ||||||
GRMZM2G539790 | Module074 | ||||||
GRMZM2G545336 | Module074 | ||||||
GRMZM2G061783 | Module074 | AT2G45330 | emb1067 | embryo defective 1067 | RNA 2'-phosphotransferase, Tpt1 / KptA family | ||
GRMZM2G700599 | Module074 | ||||||
GRMZM2G701180 | Module074 | AT3G53270 | AT3G53270 | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein | |||
GRMZM5G800973 | Module074 | ||||||
GRMZM5G856738 | Module074 | AT4G23650 | CDPK6 | calcium-dependent protein kinase 6 | calcium-dependent protein kinase 6 | ||
GRMZM5G857936 | Module074 | ||||||
GRMZM5G896883 | Module074 | AT4G38800 | MTN1 | methylthioadenosine nucleosidase 1 | methylthioadenosine nucleosidase 1 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module074 | 48 | 1 | GO:0008930 | molecular_function | methylthioadenosine nucleosidase activity | 0.002437017 | 1 | 2 |
Module074 | 48 | 2 | GO:0046498 | biological_process | S-adenosylhomocysteine metabolic process | 0.00400207 | 1 | 3 |
Module074 | 48 | 3 | GO:0033353 | biological_process | S-adenosylmethionine cycle | 0.00400207 | 1 | 3 |
Module074 | 48 | 4 | GO:0019284 | biological_process | L-methionine biosynthetic process from S-adenosylmethionine | 0.00400207 | 1 | 3 |
Module074 | 48 | 5 | GO:0030912 | biological_process | response to deep water | 0.00400207 | 1 | 3 |
Module074 | 48 | 6 | GO:0006575 | biological_process | cellular modified amino acid metabolic process | 0.004186728 | 2 | 73 |
Module074 | 48 | 7 | GO:0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation | 0.005332729 | 1 | 4 |
Module074 | 48 | 8 | GO:0046900 | biological_process | tetrahydrofolylpolyglutamate metabolic process | 0.005332729 | 1 | 4 |
Module074 | 48 | 9 | GO:0046901 | biological_process | tetrahydrofolylpolyglutamate biosynthetic process | 0.005332729 | 1 | 4 |
Module074 | 48 | 10 | GO:0004326 | molecular_function | tetrahydrofolylpolyglutamate synthase activity | 0.006081967 | 1 | 5 |
Module074 | 48 | 11 | GO:0043102 | biological_process | amino acid salvage | 0.006661708 | 1 | 5 |
Module074 | 48 | 12 | GO:0071267 | biological_process | L-methionine salvage | 0.006661708 | 1 | 5 |
Module074 | 48 | 13 | GO:0019509 | biological_process | L-methionine biosynthetic process from methylthioadenosine | 0.006661708 | 1 | 5 |
Module074 | 48 | 14 | GO:0000394 | biological_process | RNA splicing, via endonucleolytic cleavage and ligation | 0.007989011 | 1 | 6 |
Module074 | 48 | 15 | GO:0071265 | biological_process | L-methionine biosynthetic process | 0.007989011 | 1 | 6 |
Module074 | 48 | 16 | GO:0071836 | biological_process | nectar secretion | 0.007989011 | 1 | 6 |
Module074 | 48 | 17 | GO:0031219 | molecular_function | levanase activity | 0.008504901 | 1 | 7 |
Module074 | 48 | 18 | GO:0008477 | molecular_function | purine nucleosidase activity | 0.008504901 | 1 | 7 |
Module074 | 48 | 19 | GO:0046500 | biological_process | S-adenosylmethionine metabolic process | 0.010638592 | 1 | 8 |
Module074 | 48 | 20 | GO:1903959 | biological_process | regulation of anion transmembrane transport | 0.013281488 | 1 | 10 |
Module074 | 48 | 21 | GO:0010359 | biological_process | regulation of anion channel activity | 0.013281488 | 1 | 10 |
Module074 | 48 | 22 | GO:0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups | 0.01399996 | 6 | 1720 |
Module074 | 48 | 23 | GO:0019538 | biological_process | protein metabolic process | 0.014960208 | 9 | 3241 |
Module074 | 48 | 24 | GO:0022898 | biological_process | regulation of transmembrane transporter activity | 0.015917716 | 1 | 12 |
Module074 | 48 | 25 | GO:0034762 | biological_process | regulation of transmembrane transport | 0.015917716 | 1 | 12 |
Module074 | 48 | 26 | GO:0034765 | biological_process | regulation of ion transmembrane transport | 0.015917716 | 1 | 12 |
Module074 | 48 | 27 | GO:0032412 | biological_process | regulation of ion transmembrane transporter activity | 0.015917716 | 1 | 12 |
Module074 | 48 | 28 | GO:0032409 | biological_process | regulation of transporter activity | 0.015917716 | 1 | 12 |
Module074 | 48 | 29 | GO:0004575 | molecular_function | sucrose alpha-glucosidase activity | 0.016941056 | 1 | 14 |
Module074 | 48 | 30 | GO:0004564 | molecular_function | beta-fructofuranosidase activity | 0.018140639 | 1 | 15 |
Module074 | 48 | 31 | GO:0016780 | molecular_function | phosphotransferase activity, for other substituted phosphate groups | 0.018140639 | 1 | 15 |
Module074 | 48 | 32 | GO:0090599 | molecular_function | alpha-glucosidase activity | 0.018140639 | 1 | 15 |
Module074 | 48 | 33 | GO:0004674 | molecular_function | protein serine/threonine kinase activity | 0.018410139 | 4 | 858 |
Module074 | 48 | 34 | GO:1901607 | biological_process | alpha-amino acid biosynthetic process | 0.01892207 | 2 | 160 |
Module074 | 48 | 35 | GO:0044267 | biological_process | cellular protein metabolic process | 0.019579752 | 8 | 2783 |
Module074 | 48 | 36 | GO:1900673 | biological_process | olefin metabolic process | 0.021170229 | 1 | 16 |
Module074 | 48 | 37 | GO:1900674 | biological_process | olefin biosynthetic process | 0.021170229 | 1 | 16 |
Module074 | 48 | 38 | GO:0009692 | biological_process | ethylene metabolic process | 0.021170229 | 1 | 16 |
Module074 | 48 | 39 | GO:0009693 | biological_process | ethylene biosynthetic process | 0.021170229 | 1 | 16 |
Module074 | 48 | 40 | GO:0043450 | biological_process | alkene biosynthetic process | 0.021170229 | 1 | 16 |
Module074 | 48 | 41 | GO:0043449 | biological_process | cellular alkene metabolic process | 0.021170229 | 1 | 16 |
Module074 | 48 | 42 | GO:0036211 | biological_process | protein modification process | 0.021917399 | 6 | 1748 |
Module074 | 48 | 43 | GO:0006464 | biological_process | cellular protein modification process | 0.021917399 | 6 | 1748 |
Module074 | 48 | 44 | GO:0009396 | biological_process | folic acid-containing compound biosynthetic process | 0.023786545 | 1 | 18 |
Module074 | 48 | 45 | GO:0044070 | biological_process | regulation of anion transport | 0.025092225 | 1 | 19 |
Module074 | 48 | 46 | GO:0042559 | biological_process | pteridine-containing compound biosynthetic process | 0.026396256 | 1 | 20 |
Module074 | 48 | 47 | GO:0016799 | molecular_function | hydrolase activity, hydrolyzing N-glycosyl compounds | 0.027687373 | 1 | 23 |
Module074 | 48 | 48 | GO:0009086 | biological_process | methionine biosynthetic process | 0.027698639 | 1 | 21 |
Module074 | 48 | 49 | GO:0043412 | biological_process | macromolecule modification | 0.028588692 | 6 | 1854 |
Module074 | 48 | 50 | GO:0008652 | biological_process | cellular amino acid biosynthetic process | 0.030567522 | 2 | 207 |
Module074 | 48 | 51 | GO:0016740 | molecular_function | transferase activity | 0.033996838 | 8 | 3316 |
Module074 | 48 | 52 | GO:0005198 | molecular_function | structural molecule activity | 0.034928044 | 3 | 600 |
Module074 | 48 | 53 | GO:0006555 | biological_process | methionine metabolic process | 0.03547845 | 1 | 27 |
Module074 | 48 | 54 | GO:0043269 | biological_process | regulation of ion transport | 0.036769355 | 1 | 28 |
Module074 | 48 | 55 | GO:0015926 | molecular_function | glucosidase activity | 0.037145881 | 1 | 31 |
Module074 | 48 | 56 | GO:0006760 | biological_process | folic acid-containing compound metabolic process | 0.038058629 | 1 | 29 |
Module074 | 48 | 57 | GO:0044238 | biological_process | primary metabolic process | 0.038465956 | 14 | 7365 |
Module074 | 48 | 58 | GO:0032991 | cellular_component | macromolecular complex | 0.039560635 | 5 | 1984 |
Module074 | 48 | 59 | GO:0034220 | biological_process | ion transmembrane transport | 0.039765482 | 2 | 239 |
Module074 | 48 | 60 | GO:0042558 | biological_process | pteridine-containing compound metabolic process | 0.040632288 | 1 | 31 |
Module074 | 48 | 61 | GO:0004867 | molecular_function | serine-type endopeptidase inhibitor activity | 0.040670234 | 1 | 34 |
Module074 | 48 | 62 | GO:0006732 | biological_process | coenzyme metabolic process | 0.041288336 | 2 | 244 |
Module074 | 48 | 63 | GO:0007049 | biological_process | cell cycle | 0.043770981 | 2 | 252 |
Module074 | 48 | 64 | GO:0008017 | molecular_function | microtubule binding | 0.044182329 | 1 | 37 |
Module074 | 48 | 65 | GO:0015631 | molecular_function | tubulin binding | 0.046516936 | 1 | 39 |
Module074 | 48 | 66 | GO:0000097 | biological_process | sulfur amino acid biosynthetic process | 0.047038015 | 1 | 36 |
Module074 | 48 | 67 | GO:0004672 | molecular_function | protein kinase activity | 0.047118273 | 4 | 1149 |
Module074 | 48 | 68 | GO:0032559 | molecular_function | adenyl ribonucleotide binding | 0.049233481 | 6 | 2282 |
Module074 | 48 | 69 | GO:0030554 | molecular_function | adenyl nucleotide binding | 0.049596897 | 6 | 2286 |
Module074 | 48 | 70 | GO:1901605 | biological_process | alpha-amino acid metabolic process | 0.049887471 | 2 | 271 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G023863 | GRMZM2G046117 | 0.0359 |
GRMZM2G023863 | GRMZM2G163514 | 0.0426 |
GRMZM2G023863 | GRMZM2G397785 | 0.0384 |
GRMZM2G023863 | GRMZM2G527472 | 0.0425 |
GRMZM2G005365 | umc1790a | 0.0411 |
GRMZM2G005365 | GRMZM2G442763 | 0.036 |
GRMZM2G046117 | GRMZM2G095519 | 0.057 |
GRMZM2G046117 | GRMZM2G163514 | 0.0877 |
GRMZM2G046117 | GRMZM2G440855 | 0.0419 |
GRMZM2G046117 | GRMZM2G527472 | 0.073 |
GRMZM2G047546 | GRMZM2G005640 | 0.0476 |
GRMZM2G047546 | GRMZM2G054397 | 0.0567 |
GRMZM2G047546 | GRMZM2G067929 | 0.0446 |
GRMZM2G047546 | GRMZM2G088375 | 0.0353 |
GRMZM2G047546 | umc1790a | 0.0498 |
GRMZM2G005640 | umc1790a | 0.0391 |
GRMZM2G005640 | GRMZM2G170420 | 0.0536 |
GRMZM2G005640 | GRMZM2G545336 | 0.0368 |
GRMZM2G054397 | GRMZM2G067929 | 0.0388 |
GRMZM2G054397 | GRMZM2G088375 | 0.0392 |
GRMZM2G054397 | umc1790a | 0.0529 |
GRMZM2G054397 | GRMZM2G545336 | 0.0351 |
GRMZM2G054678 | GRMZM2G009438 | 0.0354 |
GRMZM2G054678 | GRMZM2G058655 | 0.0359 |
GRMZM2G054678 | GRMZM2G058896 | -0.0443 |
GRMZM2G054678 | GRMZM2G069905 | -0.0507 |
GRMZM2G054678 | umc1790a | 0.0473 |
GRMZM2G054678 | GRMZM2G154041 | -0.0361 |
GRMZM2G054678 | GRMZM2G163514 | -0.04 |
GRMZM2G054678 | GRMZM2G170420 | 0.0366 |
GRMZM2G054678 | GRMZM2G308365 | -0.0407 |
GRMZM2G054678 | GRMZM2G539790 | -0.0391 |
GRMZM2G054678 | GRMZM5G800973 | 0.0431 |
GRMZM2G058896 | incw4 | 0.0404 |
GRMZM2G058896 | GRMZM2G163514 | 0.0409 |
GRMZM2G058896 | GRMZM2G315088 | 0.0387 |
GRMZM2G058896 | GRMZM2G539790 | 0.0636 |
GRMZM2G067929 | GRMZM2G088375 | 0.0389 |
GRMZM2G067929 | umc1790a | 0.0512 |
GRMZM2G069905 | AC196156.3_FG003 | -0.0489 |
GRMZM2G069905 | GRMZM2G154041 | 0.0455 |
GRMZM2G069905 | GRMZM5G857936 | 0.0673 |
AC196156.3_FG003 | GRMZM2G315088 | -0.0391 |
AC196156.3_FG003 | GRMZM2G398781 | 0.0407 |
GRMZM2G088375 | umc1790a | 0.047 |
glk41 | GRMZM2G442763 | 0.0446 |
GRMZM2G076613 | GRMZM2G130305 | 0.0358 |
GRMZM2G076613 | GRMZM2G305167 | 0.0452 |
GRMZM2G076613 | GRMZM2G398781 | 0.079 |
incw4 | GRMZM2G700599 | -0.0399 |
umc1790a | GRMZM2G075975 | 0.0351 |
umc1790a | GRMZM2G545336 | 0.0363 |
GRMZM2G149323 | GRMZM2G149289 | 0.0399 |
GRMZM2G149323 | GRMZM2G701180 | 0.0401 |
GRMZM2G149323 | GRMZM5G896883 | 0.0389 |
GRMZM2G154041 | GRMZM2G308365 | 0.0724 |
GRMZM2G154041 | GRMZM2G392037 | 0.054 |
GRMZM2G154041 | GRMZM2G457697 | 0.0387 |
GRMZM2G016097 | GRMZM2G398781 | 0.0586 |
GRMZM2G163514 | GRMZM2G308365 | 0.0455 |
GRMZM2G163514 | GRMZM2G392037 | 0.0359 |
GRMZM2G163514 | GRMZM2G397785 | 0.0405 |
GRMZM2G163514 | GRMZM2G440855 | 0.0553 |
GRMZM2G163514 | GRMZM2G527472 | 0.0365 |
GRMZM2G308365 | GRMZM2G392037 | 0.0464 |
GRMZM2G315088 | GRMZM2G392037 | 0.04 |
GRMZM2G397785 | GRMZM2G440855 | 0.0436 |
GRMZM2G397785 | GRMZM5G857936 | 0.0371 |
GRMZM2G398781 | GRMZM2G329532 | 0.0415 |
GRMZM2G398781 | GRMZM5G896883 | 0.0395 |
GRMZM2G440855 | GRMZM2G527472 | 0.0422 |
GRMZM2G440855 | GRMZM5G856738 | -0.0353 |
GRMZM2G440855 | GRMZM5G857936 | 0.0408 |
GRMZM2G483779 | GRMZM5G896883 | 0.0421 |
GRMZM2G527472 | GRMZM5G856738 | -0.0371 |
GRMZM2G545336 | GRMZM2G061783 | 0.0375 |