This page contains information for Module078, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G007256 | Module078 | AT2G32190 | AT2G32190 | ||||
GRMZM2G000874 | Module078 | ||||||
GRMZM2G064374 | Module078 | ||||||
GRMZM2G081668 | Module078 | AT3G52390 | AT3G52390 | TatD related DNase | |||
GRMZM2G085303 | Module078 | ||||||
GRMZM2G089567 | Module078 | ||||||
GRMZM2G003461 | Module078 | ||||||
GRMZM2G007206 | Module078 | AT2G20230 | AT2G20230 | Tetraspanin family protein | |||
GRMZM2G077836 | Module078 | ||||||
GRMZM2G093035 | Module078 | ||||||
GRMZM2G122520 | Module078 | ||||||
GRMZM2G133097 | Module078 | AT3G01435 | AT3G01435 | Expressed protein | |||
GRMZM2G134020 | Module078 | AT5G27760 | AT5G27760 | Hypoxia-responsive family protein | |||
GRMZM2G145204 | Module078 | ||||||
GRMZM2G145262 | Module078 | ||||||
GRMZM2G150367 | Module078 | AT3G05500 | AT3G05500 | Rubber elongation factor protein (REF) | |||
GRMZM2G150524 | Module078 | AT3G62450 | AT3G62450 | ||||
GRMZM2G150928 | Module078 | ||||||
GRMZM2G156578 | Module078 | ||||||
GRMZM2G158586 | Module078 | AT3G60500 | CER7 | ECERIFERUM 7 | 3'-5'-exoribonuclease family protein | ||
GRMZM2G161168 | Module078 | AT3G19340 | AT3G19340 | Protein of unknown function (DUF3754) | |||
GRMZM2G172980 | Module078 | ||||||
GRMZM2G012977 | Module078 | ||||||
GRMZM2G308884 | Module078 | AT4G14180 | PRD1 | putative recombination initiation defect 1 | putative recombination initiation defect 1 | ||
GRMZM2G311165 | Module078 | ||||||
GRMZM2G351810 | Module078 | AT1G68920 | AT1G68920 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH | ||
GRMZM2G375015 | Module078 | ||||||
GRMZM2G413835 | Module078 | AT3G12990 | RRP45a | ribonuclease PH45A | ribonuclease PH45A | ||
GRMZM2G422877 | Module078 | ||||||
GRMZM2G434252 | Module078 | ||||||
GRMZM2G114672 | Module078 | AT3G05420 | ACBP4 | acyl-CoA binding protein 4 | acyl-CoA binding protein 4 | ||
GRMZM2G476655 | Module078 | ||||||
GRMZM5G807333 | Module078 | ||||||
GRMZM5G813474 | Module078 | ||||||
GRMZM5G837022 | Module078 | ||||||
GRMZM5G844243 | Module078 | ||||||
GRMZM5G801369 | Module078 | AT1G67850 | AT1G67850 | Protein of unknown function (DUF707) | |||
GRMZM5G854604 | Module078 | ||||||
GRMZM5G869550 | Module078 | ||||||
GRMZM5G869532 | Module078 | AT4G36890 | IRX14 | irregular xylem 14 | Nucleotide-diphospho-sugar transferases superfamily protein | ||
GRMZM5G874568 | Module078 | ||||||
GRMZM5G878615 | Module078 | AT3G46520 | ACT12 | actin-12 | actin-12 | ||
GRMZM5G882631 | Module078 | ||||||
GRMZM5G886969 | Module078 | ||||||
GRMZM2G157422 | Module078 | AT5G51230 | EMF2 | EMBRYONIC FLOWER 2 | VEFS-Box of polycomb protein | ||
GRMZM6G986025 | Module078 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module078 | 46 | 1 | GO:0008131 | molecular_function | primary amine oxidase activity | 0.001462389 | 1 | 4 |
Module078 | 46 | 2 | GO:0000062 | molecular_function | fatty-acyl-CoA binding | 0.002558011 | 1 | 7 |
Module078 | 46 | 3 | GO:0006349 | biological_process | regulation of gene expression by genetic imprinting | 0.002891457 | 1 | 13 |
Module078 | 46 | 4 | GO:0071514 | biological_process | genetic imprinting | 0.002891457 | 1 | 13 |
Module078 | 46 | 5 | GO:0016641 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | 0.002922995 | 1 | 8 |
Module078 | 46 | 6 | GO:0016888 | molecular_function | endodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.003287869 | 1 | 9 |
Module078 | 46 | 7 | GO:0016638 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors | 0.005110566 | 1 | 14 |
Module078 | 46 | 8 | GO:0015018 | molecular_function | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | 0.005474772 | 1 | 15 |
Module078 | 46 | 9 | GO:0004520 | molecular_function | endodeoxyribonuclease activity | 0.006566724 | 1 | 18 |
Module078 | 46 | 10 | GO:0004536 | molecular_function | deoxyribonuclease activity | 0.006566724 | 1 | 18 |
Module078 | 46 | 11 | GO:0048038 | molecular_function | quinone binding | 0.008021105 | 1 | 22 |
Module078 | 46 | 12 | GO:0015020 | molecular_function | glucuronosyltransferase activity | 0.008384423 | 1 | 23 |
Module078 | 46 | 13 | GO:1901681 | molecular_function | sulfur compound binding | 0.00874763 | 1 | 24 |
Module078 | 46 | 14 | GO:0009910 | biological_process | negative regulation of flower development | 0.009100269 | 1 | 41 |
Module078 | 46 | 15 | GO:2000242 | biological_process | negative regulation of reproductive process | 0.009985133 | 1 | 45 |
Module078 | 46 | 16 | GO:0048581 | biological_process | negative regulation of post-embryonic development | 0.01197415 | 1 | 54 |
Module078 | 46 | 17 | GO:0016893 | molecular_function | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.012011507 | 1 | 33 |
Module078 | 46 | 18 | GO:0051241 | biological_process | negative regulation of multicellular organismal process | 0.013078007 | 1 | 59 |
Module078 | 46 | 19 | GO:0048037 | molecular_function | cofactor binding | 0.013873008 | 2 | 521 |
Module078 | 46 | 20 | GO:0051093 | biological_process | negative regulation of developmental process | 0.014842468 | 1 | 67 |
Module078 | 46 | 21 | GO:0040029 | biological_process | regulation of gene expression, epigenetic | 0.016604824 | 1 | 75 |
Module078 | 46 | 22 | GO:0043167 | molecular_function | ion binding | 0.023867731 | 5 | 5827 |
Module078 | 46 | 23 | GO:0009909 | biological_process | regulation of flower development | 0.024071392 | 1 | 109 |
Module078 | 46 | 24 | GO:0004519 | molecular_function | endonuclease activity | 0.024977604 | 1 | 69 |
Module078 | 46 | 25 | GO:0009308 | biological_process | amine metabolic process | 0.025822722 | 1 | 117 |
Module078 | 46 | 26 | GO:0048831 | biological_process | regulation of shoot system development | 0.027134843 | 1 | 123 |
Module078 | 46 | 27 | GO:2000241 | biological_process | regulation of reproductive process | 0.03302481 | 1 | 150 |
Module078 | 46 | 28 | GO:0048580 | biological_process | regulation of post-embryonic development | 0.04213965 | 1 | 192 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G007256 | GRMZM2G134020 | 0.0777 |
GRMZM2G007256 | GRMZM2G150367 | 0.035 |
GRMZM2G000874 | GRMZM2G064374 | 0.0411 |
GRMZM2G000874 | GRMZM2G089567 | 0.0607 |
GRMZM2G000874 | GRMZM2G134020 | 0.0505 |
GRMZM2G000874 | GRMZM2G434252 | 0.0559 |
GRMZM2G000874 | GRMZM5G882631 | 0.0362 |
GRMZM2G064374 | GRMZM2G085303 | 0.049 |
GRMZM2G064374 | GRMZM2G089567 | 0.0732 |
GRMZM2G064374 | GRMZM2G422877 | 0.0375 |
GRMZM2G064374 | GRMZM2G434252 | 0.0391 |
GRMZM2G064374 | GRMZM5G882631 | 0.0464 |
GRMZM2G064374 | GRMZM5G886969 | 0.037 |
GRMZM2G081668 | GRMZM2G089567 | 0.0407 |
GRMZM2G081668 | GRMZM2G413835 | 0.051 |
GRMZM2G081668 | GRMZM5G844243 | 0.0615 |
GRMZM2G081668 | GRMZM5G886969 | 0.0532 |
GRMZM2G085303 | GRMZM2G422877 | 0.0364 |
GRMZM2G085303 | GRMZM5G882631 | 0.0436 |
GRMZM2G089567 | GRMZM2G003461 | 0.0368 |
GRMZM2G089567 | GRMZM2G007206 | 0.0514 |
GRMZM2G089567 | GRMZM2G077836 | 0.0523 |
GRMZM2G089567 | GRMZM2G122520 | 0.0433 |
GRMZM2G089567 | GRMZM2G134020 | 0.109 |
GRMZM2G089567 | GRMZM2G145262 | 0.0494 |
GRMZM2G089567 | GRMZM2G150524 | 0.0528 |
GRMZM2G089567 | GRMZM2G156578 | 0.0594 |
GRMZM2G089567 | GRMZM2G172980 | 0.0471 |
GRMZM2G089567 | GRMZM2G351810 | 0.0489 |
GRMZM2G089567 | GRMZM2G413835 | 0.0374 |
GRMZM2G089567 | GRMZM5G813474 | 0.0657 |
GRMZM2G089567 | GRMZM5G837022 | 0.0717 |
GRMZM2G089567 | GRMZM5G878615 | 0.0386 |
GRMZM2G089567 | GRMZM5G886969 | 0.0653 |
GRMZM2G089567 | GRMZM6G986025 | 0.0372 |
GRMZM2G003461 | GRMZM2G093035 | 0.0518 |
GRMZM2G003461 | GRMZM2G122520 | 0.0366 |
GRMZM2G003461 | GRMZM2G133097 | 0.0353 |
GRMZM2G003461 | GRMZM2G134020 | 0.0665 |
GRMZM2G003461 | GRMZM2G375015 | 0.0357 |
GRMZM2G003461 | GRMZM5G813474 | 0.0389 |
GRMZM2G007206 | GRMZM2G134020 | 0.044 |
GRMZM2G093035 | GRMZM2G134020 | 0.0809 |
GRMZM2G122520 | GRMZM2G134020 | 0.0363 |
GRMZM2G122520 | GRMZM5G837022 | 0.057 |
GRMZM2G133097 | GRMZM2G134020 | 0.0428 |
GRMZM2G134020 | GRMZM2G145262 | 0.0453 |
GRMZM2G134020 | GRMZM2G150524 | 0.043 |
GRMZM2G134020 | GRMZM2G156578 | 0.0543 |
GRMZM2G134020 | GRMZM2G172980 | 0.0416 |
GRMZM2G134020 | GRMZM2G351810 | 0.052 |
GRMZM2G134020 | GRMZM2G375015 | 0.0515 |
GRMZM2G134020 | GRMZM5G813474 | 0.0671 |
GRMZM2G134020 | GRMZM5G837022 | 0.0926 |
GRMZM2G134020 | GRMZM5G854604 | 0.043 |
GRMZM2G134020 | GRMZM5G869550 | 0.0392 |
GRMZM2G134020 | GRMZM5G886969 | 0.0502 |
GRMZM2G134020 | GRMZM6G986025 | 0.0497 |
GRMZM2G145204 | GRMZM2G161168 | 0.0497 |
GRMZM2G145204 | GRMZM2G413835 | 0.0374 |
GRMZM2G145204 | GRMZM5G878615 | 0.0413 |
GRMZM2G145204 | GRMZM5G886969 | 0.0423 |
GRMZM2G150524 | GRMZM5G837022 | 0.0352 |
GRMZM2G150928 | GRMZM5G869550 | 0.0403 |
GRMZM2G156578 | GRMZM2G172980 | 0.0426 |
GRMZM2G156578 | GRMZM5G813474 | 0.0351 |
GRMZM2G158586 | GRMZM2G308884 | 0.0426 |
GRMZM2G158586 | GRMZM2G311165 | 0.0582 |
GRMZM2G158586 | GRMZM2G413835 | 0.0519 |
GRMZM2G172980 | GRMZM2G012977 | 0.0352 |
GRMZM2G172980 | GRMZM2G375015 | 0.0449 |
GRMZM2G172980 | GRMZM5G854604 | 0.0381 |
GRMZM2G172980 | GRMZM5G886969 | 0.0422 |
GRMZM2G311165 | GRMZM2G375015 | 0.035 |
GRMZM2G311165 | GRMZM2G413835 | 0.0758 |
GRMZM2G311165 | GRMZM5G807333 | 0.0362 |
GRMZM2G351810 | GRMZM6G986025 | 0.0353 |
GRMZM2G375015 | GRMZM5G854604 | 0.0356 |
GRMZM2G375015 | GRMZM5G869550 | 0.0415 |
GRMZM2G375015 | GRMZM5G874568 | 0.0391 |
GRMZM2G375015 | GRMZM6G986025 | 0.0423 |
GRMZM2G413835 | GRMZM5G807333 | 0.0395 |
GRMZM2G413835 | GRMZM5G878615 | 0.0446 |
GRMZM2G413835 | GRMZM5G886969 | 0.0361 |
GRMZM2G422877 | GRMZM2G434252 | 0.0378 |
GRMZM2G422877 | GRMZM5G882631 | 0.0354 |
GRMZM2G434252 | GRMZM2G114672 | 0.036 |
GRMZM2G476655 | GRMZM5G886969 | 0.057 |
GRMZM5G813474 | GRMZM5G837022 | 0.0465 |
GRMZM5G837022 | GRMZM5G844243 | 0.0364 |
GRMZM5G844243 | GRMZM5G801369 | 0.0356 |
GRMZM5G869550 | GRMZM5G869532 | 0.0357 |
GRMZM5G869550 | GRMZM6G986025 | 0.039 |
GRMZM5G874568 | GRMZM6G986025 | 0.0451 |
GRMZM5G878615 | GRMZM5G886969 | 0.0392 |
GRMZM5G886969 | GRMZM2G157422 | 0.0367 |