This page contains information for Module082, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G009538 | Module082 | AT3G50690 | AT3G50690 | Leucine-rich repeat (LRR) family protein | |||
AC217271.3_FG002 | Module082 | AT5G17900 | AT5G17900 | microfibrillar-associated protein-related | |||
GRMZM2G023418 | Module082 | AT1G76810 | AT1G76810 | eukaryotic translation initiation factor 2 (eIF-2) family protein | |||
GRMZM2G041697 | Module082 | AT1G65440 | GTB1 | global transcription factor group B1 | global transcription factor group B1 | ||
GRMZM2G044498 | Module082 | ||||||
GRMZM2G037193 | Module082 | AT5G08200 | AT5G08200 | peptidoglycan-binding LysM domain-containing protein | |||
GRMZM2G069316 | Module082 | ||||||
GRMZM2G002948 | Module082 | ||||||
GRMZM2G097775 | Module082 | AT5G58470 | TAF15b | TBP-associated factor 15B | TBP-associated factor 15B | ||
GRMZM2G065669 | Module082 | AT3G07030 | AT3G07030 | Alba DNA/RNA-binding protein | |||
GRMZM2G103884 | Module082 | AT2G42370 | AT2G42370 | ||||
GRMZM2G104456 | Module082 | ||||||
GRMZM2G104481 | Module082 | AT5G40490 | AT5G40490 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
GRMZM2G064518 | Module082 | AT5G40490 | AT5G40490 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
GRMZM2G107163 | Module082 | AT5G55670 | AT5G55670 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
AC177850.2_FG005 | Module082 | AT5G62440 | AT5G62440 | Protein of unknown function (DUF3223) | |||
GRMZM2G113156 | fha15 | Module082 | AT3G20550 | DDL | DAWDLE | SMAD/FHA domain-containing protein | FHA |
GRMZM2G125239 | gbptf14 | Module082 | |||||
GRMZM2G021015 | Module082 | ||||||
GRMZM2G130127 | Module082 | AT1G74250 | AT1G74250 | DNAJ heat shock N-terminal domain-containing protein | |||
GRMZM2G131957 | Module082 | AT5G55670 | AT5G55670 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
GRMZM2G134367 | umc1467 | Module082 | AT2G03440 | NRP1 | nodulin-related protein 1 | nodulin-related protein 1 | |
GRMZM2G114371 | Module082 | AT2G32910 | AT2G32910 | DCD (Development and Cell Death) domain protein | |||
GRMZM2G139643 | Module082 | AT5G40490 | AT5G40490 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
GRMZM2G146173 | Module082 | ||||||
GRMZM2G146190 | Module082 | AT1G53720 | CYP59 | cyclophilin 59 | cyclophilin 59 | ||
GRMZM2G159975 | Module082 | AT4G16530 | AT4G16530 | Family of unknown function (DUF577) | |||
GRMZM2G161560 | umc1613 | Module082 | AT1G47970 | AT1G47970 | |||
GRMZM2G164088 | Module082 | AT3G07030 | AT3G07030 | Alba DNA/RNA-binding protein | |||
GRMZM2G164854 | Module082 | AT4G14310 | AT4G14310 | Transducin/WD40 repeat-like superfamily protein | |||
GRMZM2G167356 | Module082 | AT5G40490 | AT5G40490 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
GRMZM2G370715 | Module082 | AT5G04290 | KTF1 | kow domain-containing transcription factor 1 | kow domain-containing transcription factor 1 | ||
GRMZM2G375222 | Module082 | AT5G04290 | KTF1 | kow domain-containing transcription factor 1 | kow domain-containing transcription factor 1 | ||
GRMZM2G002548 | Module082 | AT1G28420 | HB-1 | homeobox-1 | homeobox-1 | HB | |
GRMZM2G403218 | Module082 | AT1G31814 | FRL2 | FRIGIDA like 2 | FRIGIDA like 2 | ||
GRMZM2G475504 | Module082 | AT3G58110 | AT3G58110 | ||||
GRMZM5G816228 | Module082 | ||||||
GRMZM5G822237 | Module082 | ||||||
GRMZM5G832672 | Module082 | AT5G48385 | AT5G48385 | FRIGIDA-like protein | |||
GRMZM2G101867 | Module082 | AT3G52660 | AT3G52660 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
GRMZM5G839757 | Module082 | AT4G12780 | AT4G12780 | Chaperone DnaJ-domain superfamily protein | |||
GRMZM5G868647 | Module082 | AT4G12770 | AT4G12770 | Chaperone DnaJ-domain superfamily protein | |||
GRMZM6G285883 | Module082 | AT5G04280 | AtRZ-1c | AtRZ-1c | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module082 | 43 | 1 | GO:0006354 | biological_process | DNA-templated transcription, elongation | 2.06E-09 | 3 | 9 |
Module082 | 43 | 2 | GO:0032784 | biological_process | regulation of DNA-templated transcription, elongation | 2.06E-09 | 3 | 9 |
Module082 | 43 | 3 | GO:0006357 | biological_process | regulation of transcription from RNA polymerase II promoter | 1.33E-07 | 3 | 33 |
Module082 | 43 | 4 | GO:0003676 | molecular_function | nucleic acid binding | 4.54E-07 | 13 | 3117 |
Module082 | 43 | 5 | GO:0006366 | biological_process | transcription from RNA polymerase II promoter | 5.08E-07 | 3 | 51 |
Module082 | 43 | 6 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.000367681 | 14 | 6456 |
Module082 | 43 | 7 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.000371195 | 14 | 6461 |
Module082 | 43 | 8 | GO:0005488 | molecular_function | binding | 0.001799098 | 17 | 11313 |
Module082 | 43 | 9 | GO:1901265 | molecular_function | nucleoside phosphate binding | 0.003113369 | 9 | 3369 |
Module082 | 43 | 10 | GO:0000166 | molecular_function | nucleotide binding | 0.003113369 | 9 | 3369 |
Module082 | 43 | 11 | GO:0036094 | molecular_function | small molecule binding | 0.003702758 | 9 | 3451 |
Module082 | 43 | 12 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.007597064 | 3 | 1293 |
Module082 | 43 | 13 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.007597064 | 3 | 1293 |
Module082 | 43 | 14 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.007597064 | 3 | 1293 |
Module082 | 43 | 15 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.007782542 | 3 | 1304 |
Module082 | 43 | 16 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.008285075 | 3 | 1333 |
Module082 | 43 | 17 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module082 | 43 | 18 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module082 | 43 | 19 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.009658061 | 3 | 1407 |
Module082 | 43 | 20 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.009697006 | 3 | 1409 |
Module082 | 43 | 21 | GO:0010468 | biological_process | regulation of gene expression | 0.009794798 | 3 | 1414 |
Module082 | 43 | 22 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.009794798 | 3 | 1414 |
Module082 | 43 | 23 | GO:0006351 | biological_process | transcription, DNA-templated | 0.009794798 | 3 | 1414 |
Module082 | 43 | 24 | GO:0032774 | biological_process | RNA biosynthetic process | 0.009893202 | 3 | 1419 |
Module082 | 43 | 25 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.00995254 | 3 | 1422 |
Module082 | 43 | 26 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.012170854 | 3 | 1527 |
Module082 | 43 | 27 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.012283456 | 3 | 1532 |
Module082 | 43 | 28 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.012786563 | 3 | 1554 |
Module082 | 43 | 29 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.013854847 | 3 | 1599 |
Module082 | 43 | 30 | GO:0000413 | biological_process | protein peptidyl-prolyl isomerization | 0.015855136 | 1 | 43 |
Module082 | 43 | 31 | GO:0018208 | biological_process | peptidyl-proline modification | 0.016953757 | 1 | 46 |
Module082 | 43 | 32 | GO:0019222 | biological_process | regulation of metabolic process | 0.01814826 | 3 | 1761 |
Module082 | 43 | 33 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.019408642 | 3 | 1804 |
Module082 | 43 | 34 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.019799872 | 3 | 1817 |
Module082 | 43 | 35 | GO:0016070 | biological_process | RNA metabolic process | 0.020939466 | 3 | 1854 |
Module082 | 43 | 36 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.023202162 | 3 | 1924 |
Module082 | 43 | 37 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.032903279 | 3 | 2185 |
Module082 | 43 | 38 | GO:0050794 | biological_process | regulation of cellular process | 0.041541049 | 3 | 2381 |
Module082 | 43 | 39 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.047722657 | 3 | 2507 |
Module082 | 43 | 40 | GO:0010467 | biological_process | gene expression | 0.047978218 | 3 | 2512 |
Module082 | 43 | 41 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.048697968 | 3 | 2526 |
Module082 | 43 | 42 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.048801293 | 3 | 2528 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G009538 | AC217271.3_FG002 | 0.0433 |
GRMZM2G009538 | GRMZM2G069316 | 0.036 |
GRMZM2G009538 | GRMZM2G103884 | 0.0378 |
GRMZM2G009538 | GRMZM2G104456 | 0.0371 |
GRMZM2G009538 | umc1467 | 0.067 |
GRMZM2G009538 | umc1613 | 0.0537 |
AC217271.3_FG002 | GRMZM2G069316 | 0.038 |
AC217271.3_FG002 | umc1467 | 0.0456 |
GRMZM2G023418 | GRMZM2G041697 | 0.0622 |
GRMZM2G023418 | umc1467 | 0.0414 |
GRMZM2G023418 | GRMZM2G403218 | 0.0363 |
GRMZM2G023418 | GRMZM5G839757 | 0.0524 |
GRMZM2G041697 | umc1467 | 0.0376 |
GRMZM2G041697 | GRMZM2G370715 | 0.0492 |
GRMZM2G041697 | GRMZM2G375222 | 0.0534 |
GRMZM2G041697 | GRMZM5G839757 | 0.0412 |
GRMZM2G044498 | GRMZM2G037193 | 0.0368 |
GRMZM2G044498 | umc1467 | 0.058 |
GRMZM2G044498 | GRMZM5G822237 | 0.0643 |
GRMZM2G069316 | GRMZM2G002948 | 0.0414 |
GRMZM2G069316 | GRMZM2G104456 | 0.061 |
GRMZM2G069316 | umc1467 | 0.0433 |
GRMZM2G097775 | GRMZM2G065669 | 0.0376 |
GRMZM2G097775 | GRMZM2G131957 | 0.0437 |
GRMZM2G097775 | umc1467 | 0.0433 |
GRMZM2G097775 | GRMZM2G167356 | 0.0449 |
GRMZM2G097775 | GRMZM2G375222 | 0.0389 |
GRMZM2G097775 | GRMZM5G816228 | 0.0538 |
GRMZM2G065669 | umc1467 | 0.0373 |
GRMZM2G065669 | GRMZM2G164088 | 0.0495 |
GRMZM2G065669 | GRMZM2G167356 | 0.0415 |
GRMZM2G103884 | umc1467 | 0.068 |
GRMZM2G103884 | GRMZM2G164854 | 0.0361 |
GRMZM2G103884 | GRMZM2G375222 | 0.041 |
GRMZM2G103884 | GRMZM2G475504 | 0.057 |
GRMZM2G104456 | GRMZM2G146173 | 0.0366 |
GRMZM2G104481 | GRMZM2G064518 | 0.051 |
GRMZM2G104481 | GRMZM2G167356 | 0.0507 |
GRMZM2G064518 | GRMZM2G131957 | 0.0469 |
GRMZM2G064518 | umc1467 | 0.0365 |
GRMZM2G064518 | GRMZM2G139643 | 0.0386 |
GRMZM2G064518 | GRMZM2G159975 | 0.039 |
GRMZM2G064518 | GRMZM2G167356 | 0.0473 |
GRMZM2G064518 | GRMZM5G832672 | 0.0351 |
GRMZM2G107163 | AC177850.2_FG005 | 0.047 |
GRMZM2G107163 | GRMZM2G131957 | 0.0612 |
GRMZM2G107163 | umc1467 | 0.0442 |
fha15 | gbptf14 | 0.035 |
fha15 | GRMZM2G131957 | 0.0351 |
fha15 | umc1467 | 0.039 |
gbptf14 | GRMZM2G021015 | 0.0355 |
gbptf14 | GRMZM2G131957 | 0.038 |
GRMZM2G130127 | umc1467 | 0.0455 |
GRMZM2G130127 | GRMZM2G146190 | 0.0359 |
GRMZM2G130127 | GRMZM2G403218 | 0.0416 |
GRMZM2G131957 | umc1467 | 0.0364 |
GRMZM2G131957 | GRMZM2G167356 | 0.0418 |
GRMZM2G131957 | GRMZM5G832672 | 0.0367 |
GRMZM2G131957 | GRMZM6G285883 | 0.0363 |
umc1467 | GRMZM2G114371 | 0.0457 |
umc1467 | GRMZM2G164088 | 0.04 |
umc1467 | GRMZM2G167356 | 0.0428 |
umc1467 | GRMZM2G370715 | 0.0461 |
umc1467 | GRMZM2G375222 | 0.0379 |
umc1467 | GRMZM2G403218 | 0.0367 |
umc1467 | GRMZM2G475504 | 0.0472 |
umc1467 | GRMZM5G822237 | 0.0516 |
umc1467 | GRMZM5G832672 | 0.0354 |
umc1467 | GRMZM5G839757 | 0.0372 |
GRMZM2G114371 | GRMZM2G403218 | 0.0454 |
GRMZM2G139643 | GRMZM2G167356 | 0.0488 |
GRMZM2G370715 | GRMZM2G375222 | 0.0533 |
GRMZM2G375222 | GRMZM2G002548 | 0.0353 |
GRMZM2G403218 | GRMZM5G839757 | 0.0398 |
GRMZM5G822237 | GRMZM5G839757 | 0.0375 |
GRMZM5G832672 | GRMZM2G101867 | 0.0419 |
GRMZM5G839757 | GRMZM5G868647 | 0.0375 |