This page contains information for Module084, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC197764.4_FG003 | zim30 | Module084 | AT3G17860 | JAZ3 | jasmonate-zim-domain protein 3 | jasmonate-zim-domain protein 3 | Tify |
AC214635.3_FG006 | Module084 | ||||||
GRMZM2G006716 | Module084 | AT5G06570 | AT5G06570 | alpha/beta-Hydrolases superfamily protein | |||
AC207043.3_FG002 | Module084 | AT4G15120 | AT4G15120 | VQ motif-containing protein | |||
GRMZM2G025105 | Module084 | AT5G06860 | PGIP1 | polygalacturonase inhibiting protein 1 | polygalacturonase inhibiting protein 1 | ||
GRMZM2G054663 | Module084 | AT1G80380 | AT1G80380 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | |||
AC233910.1_FG003 | Module084 | AT2G36170 | AT2G36170 | Ubiquitin supergroup;Ribosomal protein L40e | |||
GRMZM2G055507 | Module084 | AT1G74040 | IMS1 | 2-isopropylmalate synthase 1 | 2-isopropylmalate synthase 1 | ||
GRMZM2G010044 | Module084 | AT4G13430 | IIL1 | isopropyl malate isomerase large subunit 1 | isopropyl malate isomerase large subunit 1 | ||
GRMZM2G057535 | Module084 | AT1G07920 | AT1G07920 | GTP binding Elongation factor Tu family protein | |||
GRMZM2G014395 | Module084 | AT3G14680 | CYP72A14 | cytochrome P450, family 72, subfamily A, polypeptide 14 | cytochrome P450, family 72, subfamily A, polypeptide 14 | ||
GRMZM2G059582 | Module084 | ||||||
GRMZM2G083836 | Module084 | AT5G56680 | SYNC1 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | |||
GRMZM2G095280 | Module084 | AT1G05680 | UGT74E2 | Uridine diphosphate glycosyltransferase 74E2 | Uridine diphosphate glycosyltransferase 74E2 | ||
GRMZM2G120016 | Module084 | AT2G31750 | UGT74D1 | UDP-glucosyl transferase 74D1 | UDP-glucosyl transferase 74D1 | ||
GRMZM2G124229 | Module084 | AT5G06570 | AT5G06570 | alpha/beta-Hydrolases superfamily protein | |||
GRMZM2G132995 | Module084 | AT5G52450 | AT5G52450 | MATE efflux family protein | |||
GRMZM2G133988 | Module084 | AT4G13430 | IIL1 | isopropyl malate isomerase large subunit 1 | isopropyl malate isomerase large subunit 1 | ||
GRMZM2G137321 | Module084 | AT3G28580 | AT3G28580 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | |||
GRMZM2G033787 | Module084 | AT2G32150 | AT2G32150 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | |||
GRMZM2G143457 | Module084 | AT5G13210 | AT5G13210 | Uncharacterised conserved protein UCP015417, vWA | |||
GRMZM2G152179 | Module084 | AT3G45070 | AT3G45070 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | |||
GRMZM2G156206 | Module084 | AT5G64090 | AT5G64090 | ||||
GRMZM2G159587 | Module084 | AT1G79870 | AT1G79870 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | |||
GRMZM2G170017 | Module084 | AT1G01800 | AT1G01800 | NAD(P)-binding Rossmann-fold superfamily protein | |||
GRMZM2G175593 | Module084 | AT3G50930 | BCS1 | cytochrome BC1 synthesis | cytochrome BC1 synthesis | ||
GRMZM2G304121 | Module084 | AT3G55620 | eIF6A | eukaryotic initiation facor 6A | Translation initiation factor IF6 | ||
GRMZM2G119523 | Module084 | ||||||
GRMZM2G308351 | Module084 | AT3G51680 | SDR2 | short-chain dehydrogenase/reductase 2 | NAD(P)-binding Rossmann-fold superfamily protein | ||
GRMZM2G316925 | Module084 | AT5G42380 | CML37 | calmodulin like 37 | calmodulin like 37 | ||
GRMZM2G334336 | Module084 | AT1G05675 | AT1G05675 | UDP-Glycosyltransferase superfamily protein | |||
GRMZM2G388045 | Module084 | AT5G55490 | GEX1 | gamete expressed protein 1 | gamete expressed protein 1 | ||
GRMZM2G406099 | Module084 | ||||||
GRMZM2G406643 | Module084 | AT2G36170 | AT2G36170 | Ubiquitin supergroup;Ribosomal protein L40e | |||
GRMZM2G416632 | gst23 | Module084 | AT3G09270 | GSTU8 | glutathione S-transferase TAU 8 | glutathione S-transferase TAU 8 | |
GRMZM2G434506 | Module084 | AT3G05700 | AT3G05700 | Drought-responsive family protein | |||
GRMZM2G468111 | Module084 | ||||||
GRMZM5G800751 | Module084 | AT2G30440 | TPP | thylakoid processing peptide | thylakoid processing peptide | ||
GRMZM5G840002 | Module084 | AT2G43090 | AT2G43090 | Aconitase/3-isopropylmalate dehydratase protein | |||
GRMZM5G876379 | Module084 | ||||||
GRMZM6G704070 | Module084 | AT3G50930 | BCS1 | cytochrome BC1 synthesis | cytochrome BC1 synthesis |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module084 | 41 | 1 | GO:0050486 | molecular_function | intramolecular transferase activity, transferring hydroxy groups | 2.35E-05 | 2 | 4 |
Module084 | 41 | 2 | GO:0009098 | biological_process | leucine biosynthetic process | 4.54E-05 | 2 | 6 |
Module084 | 41 | 3 | GO:0006551 | biological_process | leucine metabolic process | 0.000198456 | 2 | 12 |
Module084 | 41 | 4 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.00026256 | 9 | 1315 |
Module084 | 41 | 5 | GO:0016144 | biological_process | S-glycoside biosynthetic process | 0.000273034 | 2 | 14 |
Module084 | 41 | 6 | GO:0019761 | biological_process | glucosinolate biosynthetic process | 0.000273034 | 2 | 14 |
Module084 | 41 | 7 | GO:0019758 | biological_process | glycosinolate biosynthetic process | 0.000273034 | 2 | 14 |
Module084 | 41 | 8 | GO:0016836 | molecular_function | hydro-lyase activity | 0.000419128 | 3 | 73 |
Module084 | 41 | 9 | GO:0008652 | biological_process | cellular amino acid biosynthetic process | 0.0004515 | 4 | 207 |
Module084 | 41 | 10 | GO:0016143 | biological_process | S-glycoside metabolic process | 0.000566363 | 2 | 20 |
Module084 | 41 | 11 | GO:0019760 | biological_process | glucosinolate metabolic process | 0.000566363 | 2 | 20 |
Module084 | 41 | 12 | GO:0019757 | biological_process | glycosinolate metabolic process | 0.000566363 | 2 | 20 |
Module084 | 41 | 13 | GO:0009082 | biological_process | branched-chain amino acid biosynthetic process | 0.000687082 | 2 | 22 |
Module084 | 41 | 14 | GO:0006520 | biological_process | cellular amino acid metabolic process | 0.000931534 | 5 | 441 |
Module084 | 41 | 15 | GO:0009081 | biological_process | branched-chain amino acid metabolic process | 0.001948909 | 2 | 37 |
Module084 | 41 | 16 | GO:0016835 | molecular_function | carbon-oxygen lyase activity | 0.002086714 | 3 | 127 |
Module084 | 41 | 17 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.00241473 | 9 | 1779 |
Module084 | 41 | 18 | GO:0005730 | cellular_component | nucleolus | 0.002866906 | 4 | 442 |
Module084 | 41 | 19 | GO:0051539 | molecular_function | 4 iron, 4 sulfur cluster binding | 0.003521582 | 2 | 44 |
Module084 | 41 | 20 | GO:0043023 | molecular_function | ribosomal large subunit binding | 0.004019484 | 1 | 2 |
Module084 | 41 | 21 | GO:0006421 | biological_process | asparaginyl-tRNA aminoacylation | 0.005333717 | 1 | 3 |
Module084 | 41 | 22 | GO:0004816 | molecular_function | asparagine-tRNA ligase activity | 0.006023347 | 1 | 3 |
Module084 | 41 | 23 | GO:0003852 | molecular_function | 2-isopropylmalate synthase activity | 0.006023347 | 1 | 3 |
Module084 | 41 | 24 | GO:0046686 | biological_process | response to cadmium ion | 0.006704958 | 4 | 433 |
Module084 | 41 | 25 | GO:0005829 | cellular_component | cytosol | 0.006970066 | 6 | 1321 |
Module084 | 41 | 26 | GO:0042273 | biological_process | ribosomal large subunit biogenesis | 0.007105556 | 1 | 4 |
Module084 | 41 | 27 | GO:0016053 | biological_process | organic acid biosynthetic process | 0.007787801 | 4 | 452 |
Module084 | 41 | 28 | GO:0046394 | biological_process | carboxylic acid biosynthetic process | 0.007787801 | 4 | 452 |
Module084 | 41 | 29 | GO:0031981 | cellular_component | nuclear lumen | 0.008588418 | 4 | 601 |
Module084 | 41 | 30 | GO:0009570 | cellular_component | chloroplast stroma | 0.008891691 | 4 | 607 |
Module084 | 41 | 31 | GO:0016866 | molecular_function | intramolecular transferase activity | 0.008942966 | 2 | 71 |
Module084 | 41 | 32 | GO:0009532 | cellular_component | plastid stroma | 0.00968102 | 4 | 622 |
Module084 | 41 | 33 | GO:0044550 | biological_process | secondary metabolite biosynthetic process | 0.009694386 | 2 | 84 |
Module084 | 41 | 34 | GO:0042256 | biological_process | mature ribosome assembly | 0.010640165 | 1 | 6 |
Module084 | 41 | 35 | GO:0006412 | biological_process | translation | 0.010918836 | 5 | 781 |
Module084 | 41 | 36 | GO:0043043 | biological_process | peptide biosynthetic process | 0.011381451 | 5 | 789 |
Module084 | 41 | 37 | GO:0044445 | cellular_component | cytosolic part | 0.011856901 | 3 | 346 |
Module084 | 41 | 38 | GO:0044446 | cellular_component | intracellular organelle part | 0.011867551 | 9 | 3055 |
Module084 | 41 | 39 | GO:0044422 | cellular_component | organelle part | 0.012003209 | 9 | 3060 |
Module084 | 41 | 40 | GO:0070013 | cellular_component | intracellular organelle lumen | 0.01226214 | 4 | 666 |
Module084 | 41 | 41 | GO:0043233 | cellular_component | organelle lumen | 0.01226214 | 4 | 666 |
Module084 | 41 | 42 | GO:0042255 | biological_process | ribosome assembly | 0.012402944 | 1 | 7 |
Module084 | 41 | 43 | GO:0010038 | biological_process | response to metal ion | 0.012519461 | 4 | 519 |
Module084 | 41 | 44 | GO:0031974 | cellular_component | membrane-enclosed lumen | 0.012775465 | 4 | 674 |
Module084 | 41 | 45 | GO:0006518 | biological_process | peptide metabolic process | 0.012787069 | 5 | 812 |
Module084 | 41 | 46 | GO:0009790 | biological_process | embryo development | 0.013131188 | 3 | 281 |
Module084 | 41 | 47 | GO:0043604 | biological_process | amide biosynthetic process | 0.013434014 | 5 | 822 |
Module084 | 41 | 48 | GO:0044272 | biological_process | sulfur compound biosynthetic process | 0.013529652 | 2 | 100 |
Module084 | 41 | 49 | GO:0009507 | cellular_component | chloroplast | 0.014651874 | 7 | 2032 |
Module084 | 41 | 50 | GO:0003824 | molecular_function | catalytic activity | 0.014751478 | 24 | 8627 |
Module084 | 41 | 51 | GO:0022625 | cellular_component | cytosolic large ribosomal subunit | 0.014868076 | 2 | 133 |
Module084 | 41 | 52 | GO:0044434 | cellular_component | chloroplast part | 0.015973787 | 5 | 1117 |
Module084 | 41 | 53 | GO:0044283 | biological_process | small molecule biosynthetic process | 0.016464944 | 4 | 563 |
Module084 | 41 | 54 | GO:1901659 | biological_process | glycosyl compound biosynthetic process | 0.016489557 | 2 | 111 |
Module084 | 41 | 55 | GO:0043603 | biological_process | cellular amide metabolic process | 0.016625075 | 5 | 867 |
Module084 | 41 | 56 | GO:0044435 | cellular_component | plastid part | 0.017045292 | 5 | 1135 |
Module084 | 41 | 57 | GO:0044428 | cellular_component | nuclear part | 0.017395521 | 4 | 738 |
Module084 | 41 | 58 | GO:0019748 | biological_process | secondary metabolic process | 0.018504671 | 2 | 118 |
Module084 | 41 | 59 | GO:0009536 | cellular_component | plastid | 0.019416068 | 7 | 2141 |
Module084 | 41 | 60 | GO:0008146 | molecular_function | sulfotransferase activity | 0.019941327 | 1 | 10 |
Module084 | 41 | 61 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.020823728 | 5 | 918 |
Module084 | 41 | 62 | GO:0015934 | cellular_component | large ribosomal subunit | 0.021821247 | 2 | 163 |
Module084 | 41 | 63 | GO:0044444 | cellular_component | cytoplasmic part | 0.022246972 | 12 | 5412 |
Module084 | 41 | 64 | GO:0043436 | biological_process | oxoacid metabolic process | 0.02227463 | 5 | 934 |
Module084 | 41 | 65 | GO:0006082 | biological_process | organic acid metabolic process | 0.022460603 | 5 | 936 |
Module084 | 41 | 66 | GO:0043022 | molecular_function | ribosome binding | 0.023883058 | 1 | 12 |
Module084 | 41 | 67 | GO:0070925 | biological_process | organelle assembly | 0.024658389 | 1 | 14 |
Module084 | 41 | 68 | GO:0016829 | molecular_function | lyase activity | 0.026055634 | 3 | 320 |
Module084 | 41 | 69 | GO:0051540 | molecular_function | metal cluster binding | 0.026074423 | 2 | 125 |
Module084 | 41 | 70 | GO:0051536 | molecular_function | iron-sulfur cluster binding | 0.026074423 | 2 | 125 |
Module084 | 41 | 71 | GO:0022618 | biological_process | ribonucleoprotein complex assembly | 0.026397224 | 1 | 15 |
Module084 | 41 | 72 | GO:0071826 | biological_process | ribonucleoprotein complex subunit organization | 0.026397224 | 1 | 15 |
Module084 | 41 | 73 | GO:0043021 | molecular_function | ribonucleoprotein complex binding | 0.027809414 | 1 | 14 |
Module084 | 41 | 74 | GO:0006790 | biological_process | sulfur compound metabolic process | 0.028233142 | 2 | 148 |
Module084 | 41 | 75 | GO:0008134 | molecular_function | transcription factor binding | 0.031720454 | 1 | 16 |
Module084 | 41 | 76 | GO:0046912 | molecular_function | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | 0.031720454 | 1 | 16 |
Module084 | 41 | 77 | GO:0008135 | molecular_function | translation factor activity, RNA binding | 0.032131938 | 2 | 140 |
Module084 | 41 | 78 | GO:1901607 | biological_process | alpha-amino acid biosynthetic process | 0.032590763 | 2 | 160 |
Module084 | 41 | 79 | GO:0016782 | molecular_function | transferase activity, transferring sulfur-containing groups | 0.047212599 | 1 | 24 |
Module084 | 41 | 80 | GO:0005737 | cellular_component | cytoplasm | 0.048991716 | 12 | 5900 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
zim30 | AC214635.3_FG006 | 0.0378 |
zim30 | GRMZM2G025105 | 0.0542 |
zim30 | GRMZM2G095280 | 0.0412 |
zim30 | GRMZM2G120016 | 0.0518 |
zim30 | GRMZM2G170017 | 0.0861 |
zim30 | GRMZM2G334336 | 0.0598 |
AC214635.3_FG006 | GRMZM2G095280 | 0.0405 |
AC214635.3_FG006 | GRMZM2G468111 | 0.0751 |
GRMZM2G006716 | GRMZM2G308351 | 0.0836 |
AC207043.3_FG002 | GRMZM2G334336 | 0.046 |
GRMZM2G025105 | GRMZM2G124229 | 0.0377 |
GRMZM2G025105 | GRMZM2G170017 | 0.0381 |
GRMZM2G025105 | GRMZM2G334336 | 0.0619 |
GRMZM2G054663 | AC233910.1_FG003 | 0.0489 |
AC233910.1_FG003 | GRMZM2G132995 | 0.0521 |
AC233910.1_FG003 | GRMZM2G143457 | 0.0944 |
AC233910.1_FG003 | GRMZM2G152179 | 0.0984 |
AC233910.1_FG003 | GRMZM2G304121 | 0.0442 |
AC233910.1_FG003 | GRMZM2G388045 | 0.0594 |
AC233910.1_FG003 | GRMZM2G406643 | 0.2148 |
AC233910.1_FG003 | GRMZM2G468111 | 0.1066 |
GRMZM2G055507 | GRMZM2G010044 | 0.0701 |
GRMZM2G055507 | GRMZM2G133988 | 0.0628 |
GRMZM2G010044 | GRMZM2G083836 | 0.0438 |
GRMZM2G010044 | GRMZM2G095280 | 0.0399 |
GRMZM2G010044 | GRMZM2G133988 | 0.2473 |
GRMZM2G010044 | GRMZM2G143457 | 0.0685 |
GRMZM2G010044 | GRMZM2G468111 | 0.1453 |
GRMZM2G010044 | GRMZM5G800751 | 0.0376 |
GRMZM2G057535 | GRMZM2G014395 | 0.0505 |
GRMZM2G057535 | GRMZM2G120016 | 0.0394 |
GRMZM2G057535 | GRMZM2G137321 | 0.0362 |
GRMZM2G057535 | GRMZM2G152179 | 0.0635 |
GRMZM2G057535 | GRMZM2G304121 | 0.0499 |
GRMZM2G057535 | GRMZM2G468111 | 0.1497 |
GRMZM2G057535 | GRMZM5G840002 | 0.0564 |
GRMZM2G014395 | GRMZM2G120016 | 0.0421 |
GRMZM2G059582 | GRMZM2G406643 | 0.0358 |
GRMZM2G095280 | GRMZM2G124229 | 0.0569 |
GRMZM2G095280 | GRMZM2G133988 | 0.0351 |
GRMZM2G095280 | GRMZM2G143457 | 0.07 |
GRMZM2G095280 | GRMZM2G152179 | 0.0462 |
GRMZM2G095280 | GRMZM2G170017 | 0.0851 |
GRMZM2G095280 | GRMZM2G304121 | 0.055 |
GRMZM2G095280 | GRMZM2G334336 | 0.1304 |
GRMZM2G095280 | GRMZM2G468111 | 0.0898 |
GRMZM2G095280 | GRMZM6G704070 | 0.0662 |
GRMZM2G120016 | GRMZM2G132995 | 0.0802 |
GRMZM2G120016 | GRMZM2G143457 | 0.0354 |
GRMZM2G120016 | GRMZM2G152179 | 0.0463 |
GRMZM2G120016 | GRMZM2G170017 | 0.0844 |
GRMZM2G120016 | GRMZM2G334336 | 0.0728 |
GRMZM2G120016 | GRMZM2G468111 | 0.1196 |
GRMZM2G124229 | GRMZM2G334336 | 0.0353 |
GRMZM2G132995 | GRMZM2G152179 | 0.0454 |
GRMZM2G132995 | GRMZM2G170017 | 0.0499 |
GRMZM2G132995 | GRMZM2G334336 | 0.0357 |
GRMZM2G133988 | GRMZM2G152179 | 0.0534 |
GRMZM2G133988 | GRMZM2G175593 | 0.0561 |
GRMZM2G133988 | GRMZM2G304121 | 0.0979 |
GRMZM2G133988 | GRMZM2G334336 | 0.0453 |
GRMZM2G133988 | GRMZM2G434506 | 0.0379 |
GRMZM2G133988 | GRMZM2G468111 | 0.0831 |
GRMZM2G137321 | GRMZM2G033787 | 0.0436 |
GRMZM2G137321 | GRMZM2G143457 | 0.0408 |
GRMZM2G137321 | GRMZM2G468111 | 0.073 |
GRMZM2G137321 | GRMZM5G876379 | 0.0448 |
GRMZM2G137321 | GRMZM6G704070 | 0.0534 |
GRMZM2G143457 | GRMZM2G152179 | 0.0922 |
GRMZM2G143457 | GRMZM2G156206 | 0.035 |
GRMZM2G143457 | GRMZM2G316925 | 0.0401 |
GRMZM2G143457 | GRMZM2G334336 | 0.0777 |
GRMZM2G143457 | GRMZM2G388045 | 0.0374 |
GRMZM2G143457 | GRMZM2G406099 | 0.0382 |
GRMZM2G143457 | GRMZM2G406643 | 0.0928 |
GRMZM2G143457 | GRMZM2G468111 | 0.1056 |
GRMZM2G152179 | GRMZM2G334336 | 0.077 |
GRMZM2G152179 | GRMZM2G468111 | 0.1259 |
GRMZM2G159587 | GRMZM2G388045 | 0.0433 |
GRMZM2G159587 | gst23 | 0.0467 |
GRMZM2G159587 | GRMZM2G468111 | 0.0372 |
GRMZM2G170017 | GRMZM2G334336 | 0.0848 |
GRMZM2G170017 | GRMZM2G468111 | 0.0606 |
GRMZM2G304121 | GRMZM2G119523 | 0.0414 |
GRMZM2G304121 | GRMZM2G308351 | 0.1098 |
GRMZM2G304121 | GRMZM2G334336 | 0.0808 |
GRMZM2G304121 | GRMZM2G468111 | 0.0616 |
GRMZM2G334336 | GRMZM2G388045 | 0.0466 |
GRMZM2G334336 | GRMZM2G468111 | 0.0769 |
GRMZM2G388045 | GRMZM2G468111 | 0.0705 |
GRMZM2G406099 | GRMZM2G468111 | 0.0477 |
GRMZM2G406099 | GRMZM5G876379 | 0.051 |
GRMZM2G406643 | GRMZM2G468111 | 0.1238 |
GRMZM2G468111 | GRMZM6G704070 | 0.0828 |