This page contains information for Module088, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC217358.3_FG005 | phb4 | Module088 | AT4G28510 | PHB1 | prohibitin 1 | prohibitin 1 | |
AC149475.2_FG003 | Module088 | AT1G53850 | PAE1 | 20S proteasome alpha subunit E1 | 20S proteasome alpha subunit E1 | ||
GRMZM2G028902 | Module088 | AT5G14710 | AT5G14710 | ||||
GRMZM2G029385 | Module088 | AT5G03030 | AT5G03030 | Chaperone DnaJ-domain superfamily protein | |||
GRMZM2G010933 | Module088 | AT3G15352 | COX17 | cytochrome c oxidase 17 | cytochrome c oxidase 17 | ||
GRMZM2G052571 | Module088 | AT3G09270 | GSTU8 | glutathione S-transferase TAU 8 | glutathione S-transferase TAU 8 | ||
GRMZM2G025190 | gst42 | Module088 | AT1G10360 | GSTU18 | glutathione S-transferase TAU 18 | glutathione S-transferase TAU 18 | |
GRMZM2G062121 | Module088 | ||||||
GRMZM2G041418 | Module088 | AT2G29990 | NDA2 | alternative NAD(P)H dehydrogenase 2 | alternative NAD(P)H dehydrogenase 2 | ||
GRMZM2G072682 | Module088 | AT3G18940 | AT3G18940 | clast3-related | |||
GRMZM2G026180 | Module088 | AT2G40090 | ATH9 | ABC2 homolog 9 | ABC2 homolog 9 | ||
GRMZM2G074037 | Module088 | AT1G45000 | AT1G45000 | AAA-type ATPase family protein | |||
GRMZM2G090487 | Module088 | AT4G21490 | NDB3 | NAD(P)H dehydrogenase B3 | NAD(P)H dehydrogenase B3 | ||
GRMZM2G093557 | Module088 | AT4G24820 | AT4G24820 | 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | |||
GRMZM2G107114 | phb2 | Module088 | AT5G40770 | PHB3 | prohibitin 3 | prohibitin 3 | |
GRMZM2G110185 | mss1 | Module088 | AT1G53750 | RPT1A | regulatory particle triple-A 1A | regulatory particle triple-A 1A | |
GRMZM2G115049 | vdac2 | Module088 | AT5G15090 | VDAC3 | voltage dependent anion channel 3 | voltage dependent anion channel 3 | |
GRMZM2G124417 | Module088 | AT3G60820 | PBF1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | |||
GRMZM2G019284 | Module088 | AT1G32260 | AT1G32260 | ||||
GRMZM2G047097 | Module088 | AT3G57090 | BIGYIN | Tetratricopeptide repeat (TPR)-like superfamily protein | |||
GRMZM2G125669 | aox2 | Module088 | AT3G22370 | AOX1A | alternative oxidase 1A | alternative oxidase 1A | |
GRMZM2G126367 | Module088 | AT3G50440 | MES10 | methyl esterase 10 | methyl esterase 10 | ||
GRMZM2G126742 | Module088 | AT5G04770 | CAT6 | cationic amino acid transporter 6 | cationic amino acid transporter 6 | ||
GRMZM2G139903 | Module088 | AT4G39740 | HCC2 | homologue of copper chaperone SCO1 2 | Thioredoxin superfamily protein | ||
GRMZM2G164475 | pza00667 | Module088 | AT3G59280 | TXR1 | THAXTOMIN A RESISTANT 1 | Protein Transporter, Pam16 | |
GRMZM2G023073 | stm1 | Module088 | AT4G27585 | AT4G27585 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | ||
GRMZM2G177151 | Module088 | AT4G23760 | AT4G23760 | Cox19-like CHCH family protein | |||
GRMZM2G181236 | Module088 | AT1G64900 | CYP89A2 | cytochrome P450, family 89, subfamily A, polypeptide 2 | cytochrome P450, family 89, subfamily A, polypeptide 2 | ||
GRMZM2G365374 | Module088 | AT5G09590 | MTHSC70-2 | mitochondrial HSO70 2 | mitochondrial HSO70 2 | ||
GRMZM2G391815 | Module088 | AT1G66950 | ABCG39 | ATP-binding cassette G39 | pleiotropic drug resistance 11 | ||
GRMZM2G404530 | Module088 | AT2G35736 | AT2G35736 | ||||
GRMZM2G563190 | Module088 | AT4G21490 | NDB3 | NAD(P)H dehydrogenase B3 | NAD(P)H dehydrogenase B3 | ||
GRMZM5G808610 | Module088 | AT2G03430 | AT2G03430 | Ankyrin repeat family protein | |||
GRMZM5G862355 | Module088 | AT5G32440 | AT5G32440 | Ubiquitin system component Cue protein | |||
GRMZM5G869635 | Module088 | ||||||
GRMZM5G881369 | Module088 | AT3G49645 | AT3G49645 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module088 | 36 | 1 | GO:0000502 | cellular_component | proteasome complex | 1.55E-09 | 6 | 73 |
Module088 | 36 | 2 | GO:0005740 | cellular_component | mitochondrial envelope | 9.29E-07 | 6 | 212 |
Module088 | 36 | 3 | GO:0044429 | cellular_component | mitochondrial part | 2.99E-06 | 6 | 259 |
Module088 | 36 | 4 | GO:0005739 | cellular_component | mitochondrion | 6.37E-06 | 9 | 916 |
Module088 | 36 | 5 | GO:0031966 | cellular_component | mitochondrial membrane | 1.44E-05 | 5 | 195 |
Module088 | 36 | 6 | GO:0044455 | cellular_component | mitochondrial membrane part | 9.25E-05 | 4 | 146 |
Module088 | 36 | 7 | GO:0043234 | cellular_component | protein complex | 9.82E-05 | 9 | 1283 |
Module088 | 36 | 8 | GO:0005743 | cellular_component | mitochondrial inner membrane | 0.000141763 | 4 | 163 |
Module088 | 36 | 9 | GO:0008540 | cellular_component | proteasome regulatory particle, base subcomplex | 0.00021197 | 2 | 13 |
Module088 | 36 | 10 | GO:0030163 | biological_process | protein catabolic process | 0.000238888 | 4 | 238 |
Module088 | 36 | 11 | GO:0022624 | cellular_component | proteasome accessory complex | 0.000284768 | 2 | 15 |
Module088 | 36 | 12 | GO:0005838 | cellular_component | proteasome regulatory particle | 0.000284768 | 2 | 15 |
Module088 | 36 | 13 | GO:0019866 | cellular_component | organelle inner membrane | 0.000367801 | 4 | 209 |
Module088 | 36 | 14 | GO:0005618 | cellular_component | cell wall | 0.000412294 | 6 | 622 |
Module088 | 36 | 15 | GO:0030312 | cellular_component | external encapsulating structure | 0.000415882 | 6 | 623 |
Module088 | 36 | 16 | GO:0050660 | molecular_function | flavin adenine dinucleotide binding | 0.000519645 | 3 | 125 |
Module088 | 36 | 17 | GO:0071944 | cellular_component | cell periphery | 0.000641372 | 11 | 2455 |
Module088 | 36 | 18 | GO:0005886 | cellular_component | plasma membrane | 0.000721864 | 10 | 2055 |
Module088 | 36 | 19 | GO:0009057 | biological_process | macromolecule catabolic process | 0.000795619 | 4 | 327 |
Module088 | 36 | 20 | GO:0070469 | cellular_component | respiratory chain | 0.000802306 | 3 | 110 |
Module088 | 36 | 21 | GO:0016020 | cellular_component | membrane | 0.000904066 | 15 | 4716 |
Module088 | 36 | 22 | GO:0070003 | molecular_function | threonine-type peptidase activity | 0.000957897 | 2 | 36 |
Module088 | 36 | 23 | GO:0004298 | molecular_function | threonine-type endopeptidase activity | 0.000957897 | 2 | 36 |
Module088 | 36 | 24 | GO:0098800 | cellular_component | inner mitochondrial membrane protein complex | 0.000983819 | 3 | 118 |
Module088 | 36 | 25 | GO:0007005 | biological_process | mitochondrion organization | 0.001091633 | 2 | 37 |
Module088 | 36 | 26 | GO:0098798 | cellular_component | mitochondrial protein complex | 0.001189552 | 3 | 126 |
Module088 | 36 | 27 | GO:0005839 | cellular_component | proteasome core complex | 0.00158141 | 2 | 35 |
Module088 | 36 | 28 | GO:0031090 | cellular_component | organelle membrane | 0.001847619 | 6 | 826 |
Module088 | 36 | 29 | GO:0031967 | cellular_component | organelle envelope | 0.00206506 | 6 | 844 |
Module088 | 36 | 30 | GO:0031975 | cellular_component | envelope | 0.002180917 | 6 | 853 |
Module088 | 36 | 31 | GO:0032991 | cellular_component | macromolecular complex | 0.002710032 | 9 | 1984 |
Module088 | 36 | 32 | GO:0048527 | biological_process | lateral root development | 0.002943174 | 2 | 61 |
Module088 | 36 | 33 | GO:0031314 | cellular_component | extrinsic component of mitochondrial inner membrane | 0.003408604 | 1 | 2 |
Module088 | 36 | 34 | GO:0010035 | biological_process | response to inorganic substance | 0.003804778 | 5 | 829 |
Module088 | 36 | 35 | GO:0016531 | molecular_function | copper chaperone activity | 0.003835846 | 1 | 3 |
Module088 | 36 | 36 | GO:0010038 | biological_process | response to metal ion | 0.004325855 | 4 | 519 |
Module088 | 36 | 37 | GO:0005747 | cellular_component | mitochondrial respiratory chain complex I | 0.004438759 | 2 | 59 |
Module088 | 36 | 38 | GO:0048528 | biological_process | post-embryonic root development | 0.004529661 | 2 | 76 |
Module088 | 36 | 39 | GO:0030150 | biological_process | protein import into mitochondrial matrix | 0.005332729 | 1 | 4 |
Module088 | 36 | 40 | GO:0030964 | cellular_component | NADH dehydrogenase complex | 0.005363498 | 2 | 65 |
Module088 | 36 | 41 | GO:0045271 | cellular_component | respiratory chain complex I | 0.005363498 | 2 | 65 |
Module088 | 36 | 42 | GO:0016530 | molecular_function | metallochaperone activity | 0.006385287 | 1 | 5 |
Module088 | 36 | 43 | GO:0043207 | biological_process | response to external biotic stimulus | 0.007102417 | 4 | 597 |
Module088 | 36 | 44 | GO:0051707 | biological_process | response to other organism | 0.007102417 | 4 | 597 |
Module088 | 36 | 45 | GO:1901575 | biological_process | organic substance catabolic process | 0.007313064 | 4 | 602 |
Module088 | 36 | 46 | GO:0009916 | molecular_function | alternative oxidase activity | 0.007657676 | 1 | 6 |
Module088 | 36 | 47 | GO:0007585 | biological_process | respiratory gaseous exchange | 0.007989011 | 1 | 6 |
Module088 | 36 | 48 | GO:0009607 | biological_process | response to biotic stimulus | 0.008106067 | 4 | 620 |
Module088 | 36 | 49 | GO:0048569 | biological_process | post-embryonic organ development | 0.008637912 | 2 | 106 |
Module088 | 36 | 50 | GO:1901652 | biological_process | response to peptide | 0.009314638 | 1 | 7 |
Module088 | 36 | 51 | GO:0060416 | biological_process | response to growth hormone | 0.009314638 | 1 | 7 |
Module088 | 36 | 52 | GO:0043434 | biological_process | response to peptide hormone | 0.009314638 | 1 | 7 |
Module088 | 36 | 53 | GO:0098805 | cellular_component | whole membrane | 0.009342468 | 4 | 506 |
Module088 | 36 | 54 | GO:0009056 | biological_process | catabolic process | 0.009551965 | 4 | 650 |
Module088 | 36 | 55 | GO:0031312 | cellular_component | extrinsic component of organelle membrane | 0.01019292 | 1 | 6 |
Module088 | 36 | 56 | GO:0005746 | cellular_component | mitochondrial respiratory chain | 0.010724576 | 2 | 93 |
Module088 | 36 | 57 | GO:0098803 | cellular_component | respiratory chain complex | 0.010724576 | 2 | 93 |
Module088 | 36 | 58 | GO:0050662 | molecular_function | coenzyme binding | 0.01103431 | 3 | 368 |
Module088 | 36 | 59 | GO:0008509 | molecular_function | anion transmembrane transporter activity | 0.011342698 | 2 | 127 |
Module088 | 36 | 60 | GO:0000302 | biological_process | response to reactive oxygen species | 0.012032358 | 2 | 126 |
Module088 | 36 | 61 | GO:1901698 | biological_process | response to nitrogen compound | 0.012584731 | 2 | 129 |
Module088 | 36 | 62 | GO:0071731 | biological_process | response to nitric oxide | 0.013281488 | 1 | 10 |
Module088 | 36 | 63 | GO:1990542 | biological_process | mitochondrial transmembrane transport | 0.014600435 | 1 | 11 |
Module088 | 36 | 64 | GO:0009704 | biological_process | de-etiolation | 0.014600435 | 1 | 11 |
Module088 | 36 | 65 | GO:0005744 | cellular_component | mitochondrial inner membrane presequence translocase complex | 0.015252508 | 1 | 9 |
Module088 | 36 | 66 | GO:0046688 | biological_process | response to copper ion | 0.015917716 | 1 | 12 |
Module088 | 36 | 67 | GO:0098588 | cellular_component | bounding membrane of organelle | 0.017769408 | 4 | 611 |
Module088 | 36 | 68 | GO:0042221 | biological_process | response to chemical | 0.018317494 | 6 | 1681 |
Module088 | 36 | 69 | GO:0046686 | biological_process | response to cadmium ion | 0.018772805 | 3 | 433 |
Module088 | 36 | 70 | GO:0070585 | biological_process | protein localization to mitochondrion | 0.019859588 | 1 | 15 |
Module088 | 36 | 71 | GO:0072655 | biological_process | establishment of protein localization to mitochondrion | 0.019859588 | 1 | 15 |
Module088 | 36 | 72 | GO:0006626 | biological_process | protein targeting to mitochondrion | 0.019859588 | 1 | 15 |
Module088 | 36 | 73 | GO:0031970 | cellular_component | organelle envelope lumen | 0.020287662 | 1 | 12 |
Module088 | 36 | 74 | GO:0005758 | cellular_component | mitochondrial intermembrane space | 0.020287662 | 1 | 12 |
Module088 | 36 | 75 | GO:0009605 | biological_process | response to external stimulus | 0.020488498 | 4 | 814 |
Module088 | 36 | 76 | GO:1990204 | cellular_component | oxidoreductase complex | 0.020841711 | 2 | 132 |
Module088 | 36 | 77 | GO:0006825 | biological_process | copper ion transport | 0.021170229 | 1 | 16 |
Module088 | 36 | 78 | GO:0006749 | biological_process | glutathione metabolic process | 0.022479213 | 1 | 17 |
Module088 | 36 | 79 | GO:0005774 | cellular_component | vacuolar membrane | 0.024090885 | 3 | 373 |
Module088 | 36 | 80 | GO:0031974 | cellular_component | membrane-enclosed lumen | 0.024600671 | 4 | 674 |
Module088 | 36 | 81 | GO:0044437 | cellular_component | vacuolar part | 0.024942084 | 3 | 378 |
Module088 | 36 | 82 | GO:0006820 | biological_process | anion transport | 0.025076359 | 2 | 186 |
Module088 | 36 | 83 | GO:0044070 | biological_process | regulation of anion transport | 0.025092225 | 1 | 19 |
Module088 | 36 | 84 | GO:0050896 | biological_process | response to stimulus | 0.025913277 | 9 | 3528 |
Module088 | 36 | 85 | GO:0048037 | molecular_function | cofactor binding | 0.027688236 | 3 | 521 |
Module088 | 36 | 86 | GO:0006839 | biological_process | mitochondrial transport | 0.027698639 | 1 | 21 |
Module088 | 36 | 87 | GO:0008308 | molecular_function | voltage-gated anion channel activity | 0.027806064 | 1 | 22 |
Module088 | 36 | 88 | GO:0019773 | cellular_component | proteasome core complex, alpha-subunit complex | 0.028625591 | 1 | 17 |
Module088 | 36 | 89 | GO:0051603 | biological_process | proteolysis involved in cellular protein catabolic process | 0.028687361 | 2 | 200 |
Module088 | 36 | 90 | GO:0051704 | biological_process | multi-organism process | 0.028795054 | 4 | 903 |
Module088 | 36 | 91 | GO:0005253 | molecular_function | anion channel activity | 0.029052314 | 1 | 23 |
Module088 | 36 | 92 | GO:0044257 | biological_process | cellular protein catabolic process | 0.030025344 | 2 | 205 |
Module088 | 36 | 93 | GO:0098796 | cellular_component | membrane protein complex | 0.031556738 | 3 | 414 |
Module088 | 36 | 94 | GO:0016682 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | 0.032781943 | 1 | 26 |
Module088 | 36 | 95 | GO:0003333 | biological_process | amino acid transmembrane transport | 0.034185911 | 1 | 26 |
Module088 | 36 | 96 | GO:0043269 | biological_process | regulation of ion transport | 0.036769355 | 1 | 28 |
Module088 | 36 | 97 | GO:0005730 | cellular_component | nucleolus | 0.037290544 | 3 | 442 |
Module088 | 36 | 98 | GO:0048513 | biological_process | animal organ development | 0.037967852 | 2 | 233 |
Module088 | 36 | 99 | GO:0044265 | biological_process | cellular macromolecule catabolic process | 0.038265178 | 2 | 234 |
Module088 | 36 | 100 | GO:0015171 | molecular_function | amino acid transmembrane transporter activity | 0.038967688 | 1 | 31 |
Module088 | 36 | 101 | GO:0005244 | molecular_function | voltage-gated ion channel activity | 0.041431421 | 1 | 33 |
Module088 | 36 | 102 | GO:0022832 | molecular_function | voltage-gated channel activity | 0.041431421 | 1 | 33 |
Module088 | 36 | 103 | GO:0055114 | biological_process | oxidation-reduction process | 0.041710316 | 5 | 1495 |
Module088 | 36 | 104 | GO:0006950 | biological_process | response to stress | 0.04579708 | 6 | 2065 |
Module088 | 36 | 105 | GO:0016491 | molecular_function | oxidoreductase activity | 0.04612589 | 5 | 1587 |
Module088 | 36 | 106 | GO:0004364 | molecular_function | glutathione transferase activity | 0.046340853 | 1 | 37 |
Module088 | 36 | 107 | GO:0016679 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors | 0.047564464 | 1 | 38 |
Module088 | 36 | 108 | GO:0005737 | cellular_component | cytoplasm | 0.048117602 | 14 | 5900 |
Module088 | 36 | 109 | GO:1903825 | biological_process | organic acid transmembrane transport | 0.048314303 | 1 | 37 |
Module088 | 36 | 110 | GO:0006811 | biological_process | ion transport | 0.048969503 | 3 | 629 |
Module088 | 36 | 111 | GO:0005773 | cellular_component | vacuole | 0.049295857 | 4 | 838 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
phb4 | AC149475.2_FG003 | 0.0361 |
phb4 | GRMZM2G072682 | 0.035 |
phb4 | phb2 | 0.0377 |
phb4 | vdac2 | 0.0389 |
phb4 | GRMZM2G124417 | 0.0488 |
phb4 | pza00667 | 0.0633 |
phb4 | GRMZM2G177151 | 0.0413 |
phb4 | GRMZM2G365374 | 0.0387 |
phb4 | GRMZM5G881369 | 0.0475 |
GRMZM2G028902 | GRMZM5G808610 | 0.0376 |
GRMZM2G029385 | GRMZM2G010933 | 0.063 |
GRMZM2G029385 | GRMZM2G124417 | 0.09 |
GRMZM2G029385 | aox2 | 0.0632 |
GRMZM2G029385 | GRMZM5G862355 | 0.0405 |
GRMZM2G010933 | GRMZM2G124417 | 0.0434 |
GRMZM2G052571 | gst42 | 0.0398 |
GRMZM2G052571 | aox2 | 0.0486 |
GRMZM2G052571 | GRMZM2G126367 | 0.0482 |
GRMZM2G052571 | GRMZM2G391815 | 0.0368 |
gst42 | GRMZM2G062121 | 0.0441 |
gst42 | GRMZM2G124417 | 0.0527 |
gst42 | aox2 | 0.0647 |
gst42 | GRMZM2G126367 | 0.0764 |
gst42 | GRMZM2G181236 | 0.0437 |
gst42 | GRMZM5G862355 | 0.0361 |
GRMZM2G062121 | GRMZM2G041418 | 0.0612 |
GRMZM2G062121 | GRMZM2G126367 | 0.0657 |
GRMZM2G041418 | GRMZM2G090487 | 0.1264 |
GRMZM2G041418 | phb2 | 0.0357 |
GRMZM2G041418 | GRMZM2G124417 | 0.0794 |
GRMZM2G041418 | aox2 | 0.0973 |
GRMZM2G041418 | GRMZM2G126367 | 0.1167 |
GRMZM2G041418 | GRMZM2G563190 | 0.1064 |
GRMZM2G072682 | GRMZM2G026180 | 0.0521 |
GRMZM2G072682 | GRMZM2G093557 | 0.0388 |
GRMZM2G072682 | GRMZM2G124417 | 0.0552 |
GRMZM2G072682 | GRMZM2G365374 | 0.0409 |
GRMZM2G026180 | GRMZM2G074037 | 0.0352 |
GRMZM2G026180 | mss1 | 0.0383 |
GRMZM2G026180 | GRMZM2G124417 | 0.0572 |
GRMZM2G026180 | GRMZM2G365374 | 0.0352 |
GRMZM2G074037 | GRMZM2G124417 | 0.0477 |
GRMZM2G090487 | GRMZM2G124417 | 0.0436 |
GRMZM2G090487 | GRMZM2G126742 | 0.0391 |
GRMZM2G090487 | GRMZM2G563190 | 0.1492 |
phb2 | mss1 | 0.0352 |
phb2 | vdac2 | 0.0377 |
phb2 | GRMZM2G124417 | 0.0367 |
mss1 | GRMZM2G124417 | 0.0376 |
mss1 | pza00667 | 0.0416 |
vdac2 | GRMZM2G124417 | 0.0482 |
vdac2 | pza00667 | 0.0379 |
GRMZM2G124417 | GRMZM2G019284 | 0.0526 |
GRMZM2G124417 | GRMZM2G047097 | 0.0389 |
GRMZM2G124417 | aox2 | 0.0552 |
GRMZM2G124417 | GRMZM2G126367 | 0.0454 |
GRMZM2G124417 | GRMZM2G139903 | 0.0473 |
GRMZM2G124417 | pza00667 | 0.0521 |
GRMZM2G124417 | GRMZM5G808610 | 0.0544 |
aox2 | GRMZM2G126367 | 0.0357 |
aox2 | pza00667 | 0.0453 |
aox2 | GRMZM2G365374 | 0.04 |
aox2 | GRMZM2G404530 | 0.0642 |
GRMZM2G126367 | GRMZM2G404530 | 0.045 |
pza00667 | stm1 | 0.0469 |
GRMZM2G404530 | GRMZM5G869635 | 0.0351 |
GRMZM5G862355 | GRMZM5G869635 | 0.0454 |