This page contains information for Module089, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC194321.3_FG009 | Module089 | ||||||
GRMZM2G003796 | Module089 | AT3G26300 | CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | ||
GRMZM2G009794 | Module089 | ||||||
GRMZM2G024468 | myb83 | Module089 | AT3G28910 | MYB30 | myb domain protein 30 | myb domain protein 30 | MYB |
GRMZM2G006578 | bzip7 | Module089 | AT5G06839 | TGA10 | TGACG (TGA) motif-binding protein 10 | bZIP transcription factor family protein | bZIP |
GRMZM2G026927 | ofp28 | Module089 | AT5G58360 | OFP3 | ovate family protein 3 | ovate family protein 3 | OFP |
GRMZM2G031733 | Module089 | ||||||
GRMZM2G045239 | Module089 | AT5G02020 | SIS | Salt Induced Serine rich | |||
GRMZM2G046776 | Module089 | AT2G29200 | PUM1 | pumilio 1 | pumilio 1 | ||
GRMZM2G048910 | myb106 | Module089 | AT5G16600 | MYB43 | myb domain protein 43 | myb domain protein 43 | MYB |
GRMZM2G065617 | Module089 | AT2G43820 | UGT74F2 | UDP-glucosyltransferase 74F2 | UDP-glucosyltransferase 74F2 | ||
GRMZM2G073908 | Module089 | AT4G12910 | scpl20 | serine carboxypeptidase-like 20 | serine carboxypeptidase-like 20 | ||
GRMZM2G017237 | Module089 | AT3G63240 | AT3G63240 | DNAse I-like superfamily protein | |||
GRMZM2G081464 | Module089 | AT3G18280 | AT3G18280 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | |||
GRMZM2G091774 | Module089 | AT4G35160 | AT4G35160 | O-methyltransferase family protein | |||
GRMZM2G104419 | Module089 | AT1G15690 | AVP1 | Inorganic H pyrophosphatase family protein | |||
GRMZM2G114988 | Module089 | AT4G37360 | CYP81D2 | cytochrome P450, family 81, subfamily D, polypeptide 2 | cytochrome P450, family 81, subfamily D, polypeptide 2 | ||
GRMZM2G125934 | bzip85 | Module089 | AT5G06839 | TGA10 | TGACG (TGA) motif-binding protein 10 | bZIP transcription factor family protein | bZIP |
GRMZM2G131409 | Module089 | AT1G56580 | SVB | SMALLER WITH VARIABLE BRANCHES | Protein of unknown function, DUF538 | ||
GRMZM2G141325 | Module089 | AT2G42840 | PDF1 | protodermal factor 1 | protodermal factor 1 | ||
GRMZM2G167576 | cadtfr12 | Module089 | AT1G21970 | LEC1 | LEAFY COTYLEDON 1 | Histone superfamily protein | CCAAT |
GRMZM2G177792 | prx35 | Module089 | AT1G05260 | RCI3 | RARE COLD INDUCIBLE GENE 3 | Peroxidase superfamily protein | |
GRMZM2G317160 | ereb26 | Module089 | AT5G57390 | AIL5 | AINTEGUMENTA-like 5 | AINTEGUMENTA-like 5 | AP2-EREBP |
GRMZM2G346138 | Module089 | AT2G43200 | AT2G43200 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | |||
GRMZM2G374313 | Module089 | AT3G59710 | AT3G59710 | NAD(P)-binding Rossmann-fold superfamily protein | |||
GRMZM2G421565 | Module089 | AT4G19450 | AT4G19450 | Major facilitator superfamily protein | |||
GRMZM2G437435 | sbt1 | Module089 | AT5G67360 | ARA12 | Subtilase family protein | ||
GRMZM2G449056 | Module089 | AT3G23250 | MYB15 | myb domain protein 15 | myb domain protein 15 | MYB-related | |
GRMZM2G450071 | Module089 | AT2G20310 | RIN13 | RPM1 interacting protein 13 | RPM1 interacting protein 13 | ||
GRMZM2G468855 | Module089 | AT1G01800 | AT1G01800 | NAD(P)-binding Rossmann-fold superfamily protein | |||
GRMZM2G704406 | Module089 | ||||||
GRMZM5G830365 | Module089 | AT3G16770 | EBP | ethylene-responsive element binding protein | ethylene-responsive element binding protein | AP2-EREBP | |
GRMZM2G704349 | Module089 | ||||||
GRMZM5G854655 | Module089 | AT3G53150 | UGT73D1 | UDP-glucosyl transferase 73D1 | UDP-glucosyl transferase 73D1 | ||
GRMZM5G873767 | Module089 | AT5G45910 | AT5G45910 | GDSL-like Lipase/Acylhydrolase superfamily protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module089 | 35 | 1 | GO:0003677 | molecular_function | DNA binding | 0.001282692 | 9 | 1891 |
Module089 | 35 | 2 | GO:0010067 | biological_process | procambium histogenesis | 0.005628365 | 1 | 4 |
Module089 | 35 | 3 | GO:0046030 | molecular_function | inositol trisphosphate phosphatase activity | 0.006082707 | 1 | 4 |
Module089 | 35 | 4 | GO:0046855 | biological_process | inositol phosphate dephosphorylation | 0.00703076 | 1 | 5 |
Module089 | 35 | 5 | GO:0046838 | biological_process | phosphorylated carbohydrate dephosphorylation | 0.00703076 | 1 | 5 |
Module089 | 35 | 6 | GO:0071545 | biological_process | inositol phosphate catabolic process | 0.00703076 | 1 | 5 |
Module089 | 35 | 7 | GO:0010065 | biological_process | primary meristem tissue development | 0.00843128 | 1 | 6 |
Module089 | 35 | 8 | GO:0052745 | molecular_function | inositol phosphate phosphatase activity | 0.010621412 | 1 | 7 |
Module089 | 35 | 9 | GO:0003676 | molecular_function | nucleic acid binding | 0.012119322 | 10 | 3117 |
Module089 | 35 | 10 | GO:0046174 | biological_process | polyol catabolic process | 0.012621623 | 1 | 9 |
Module089 | 35 | 11 | GO:0046164 | biological_process | alcohol catabolic process | 0.014014672 | 1 | 10 |
Module089 | 35 | 12 | GO:0032957 | biological_process | inositol trisphosphate metabolic process | 0.014014672 | 1 | 10 |
Module089 | 35 | 13 | GO:0010588 | biological_process | cotyledon vascular tissue pattern formation | 0.015405859 | 1 | 11 |
Module089 | 35 | 14 | GO:1901616 | biological_process | organic hydroxy compound catabolic process | 0.016795186 | 1 | 12 |
Module089 | 35 | 15 | GO:0046434 | biological_process | organophosphate catabolic process | 0.018182655 | 1 | 13 |
Module089 | 35 | 16 | GO:0048826 | biological_process | cotyledon morphogenesis | 0.018182655 | 1 | 13 |
Module089 | 35 | 17 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.018777322 | 4 | 683 |
Module089 | 35 | 18 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.018868398 | 4 | 684 |
Module089 | 35 | 19 | GO:0010305 | biological_process | leaf vascular tissue pattern formation | 0.023714007 | 1 | 17 |
Module089 | 35 | 20 | GO:0009678 | molecular_function | hydrogen-translocating pyrophosphatase activity | 0.02560717 | 1 | 17 |
Module089 | 35 | 21 | GO:0005402 | molecular_function | cation:sugar symporter activity | 0.027093703 | 1 | 18 |
Module089 | 35 | 22 | GO:0005351 | molecular_function | sugar:proton symporter activity | 0.027093703 | 1 | 18 |
Module089 | 35 | 23 | GO:0020037 | molecular_function | heme binding | 0.027800748 | 3 | 436 |
Module089 | 35 | 24 | GO:0043647 | biological_process | inositol phosphate metabolic process | 0.027843133 | 1 | 20 |
Module089 | 35 | 25 | GO:0048598 | biological_process | embryonic morphogenesis | 0.029215828 | 1 | 21 |
Module089 | 35 | 26 | GO:0048508 | biological_process | embryonic meristem development | 0.029215828 | 1 | 21 |
Module089 | 35 | 27 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.029464913 | 15 | 6456 |
Module089 | 35 | 28 | GO:0046906 | molecular_function | tetrapyrrole binding | 0.029467565 | 3 | 446 |
Module089 | 35 | 29 | GO:0019222 | biological_process | regulation of metabolic process | 0.029561704 | 6 | 1761 |
Module089 | 35 | 30 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.02968018 | 15 | 6461 |
Module089 | 35 | 31 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.02996806 | 5 | 1293 |
Module089 | 35 | 32 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.02996806 | 5 | 1293 |
Module089 | 35 | 33 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.02996806 | 5 | 1293 |
Module089 | 35 | 34 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.030956913 | 5 | 1304 |
Module089 | 35 | 35 | GO:0008236 | molecular_function | serine-type peptidase activity | 0.031701894 | 2 | 184 |
Module089 | 35 | 36 | GO:0017171 | molecular_function | serine hydrolase activity | 0.031701894 | 2 | 184 |
Module089 | 35 | 37 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.031889687 | 3 | 460 |
Module089 | 35 | 38 | GO:0015295 | molecular_function | solute:proton symporter activity | 0.033018094 | 1 | 22 |
Module089 | 35 | 39 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.033665517 | 5 | 1333 |
Module089 | 35 | 40 | GO:0046856 | biological_process | phosphatidylinositol dephosphorylation | 0.037413513 | 1 | 27 |
Module089 | 35 | 41 | GO:0046839 | biological_process | phospholipid dephosphorylation | 0.037413513 | 1 | 27 |
Module089 | 35 | 42 | GO:0004427 | molecular_function | inorganic diphosphatase activity | 0.037438643 | 1 | 25 |
Module089 | 35 | 43 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.037750448 | 5 | 1374 |
Module089 | 35 | 44 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.037750448 | 5 | 1374 |
Module089 | 35 | 45 | GO:0000139 | cellular_component | Golgi membrane | 0.040419238 | 1 | 62 |
Module089 | 35 | 46 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.041259774 | 5 | 1407 |
Module089 | 35 | 47 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.041478886 | 5 | 1409 |
Module089 | 35 | 48 | GO:0048825 | biological_process | cotyledon development | 0.041487721 | 1 | 30 |
Module089 | 35 | 49 | GO:0010468 | biological_process | regulation of gene expression | 0.042029897 | 5 | 1414 |
Module089 | 35 | 50 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.042029897 | 5 | 1414 |
Module089 | 35 | 51 | GO:0006351 | biological_process | transcription, DNA-templated | 0.042029897 | 5 | 1414 |
Module089 | 35 | 52 | GO:0032774 | biological_process | RNA biosynthetic process | 0.042585534 | 5 | 1419 |
Module089 | 35 | 53 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.042921139 | 5 | 1422 |
Module089 | 35 | 54 | GO:0015294 | molecular_function | solute:cation symporter activity | 0.044763146 | 1 | 30 |
Module089 | 35 | 55 | GO:0051119 | molecular_function | sugar transmembrane transporter activity | 0.049132134 | 1 | 33 |
Module089 | 35 | 56 | GO:0015293 | molecular_function | symporter activity | 0.049132134 | 1 | 33 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC194321.3_FG009 | GRMZM2G031733 | 0.0385 |
AC194321.3_FG009 | GRMZM2G065617 | 0.0551 |
AC194321.3_FG009 | cadtfr12 | 0.0432 |
GRMZM2G003796 | GRMZM2G009794 | 0.061 |
GRMZM2G003796 | myb83 | 0.0359 |
GRMZM2G003796 | GRMZM2G046776 | 0.0352 |
GRMZM2G003796 | GRMZM2G073908 | 0.0532 |
GRMZM2G003796 | GRMZM2G091774 | 0.0701 |
GRMZM2G003796 | GRMZM2G114988 | 0.0475 |
GRMZM2G003796 | GRMZM2G141325 | 0.0359 |
GRMZM2G003796 | cadtfr12 | 0.0961 |
GRMZM2G003796 | ereb26 | 0.0356 |
GRMZM2G003796 | GRMZM2G346138 | 0.0393 |
GRMZM2G003796 | GRMZM2G374313 | 0.0635 |
GRMZM2G003796 | sbt1 | 0.0655 |
GRMZM2G003796 | GRMZM5G830365 | 0.041 |
GRMZM2G009794 | ofp28 | 0.0418 |
GRMZM2G009794 | myb106 | 0.0354 |
GRMZM2G009794 | cadtfr12 | 0.0488 |
myb83 | bzip7 | 0.0461 |
myb83 | ofp28 | 0.0457 |
myb83 | GRMZM2G031733 | 0.0635 |
myb83 | GRMZM2G045239 | 0.0369 |
myb83 | myb106 | 0.0459 |
myb83 | GRMZM2G065617 | 0.0566 |
myb83 | GRMZM2G081464 | 0.0494 |
myb83 | GRMZM2G114988 | 0.0425 |
myb83 | GRMZM2G131409 | 0.0357 |
myb83 | cadtfr12 | 0.0658 |
myb83 | prx35 | 0.0462 |
myb83 | ereb26 | 0.0425 |
myb83 | GRMZM2G468855 | 0.0369 |
myb83 | GRMZM5G830365 | 0.0365 |
myb83 | GRMZM5G854655 | 0.062 |
myb83 | GRMZM5G873767 | 0.0626 |
bzip7 | myb106 | 0.0382 |
bzip7 | bzip85 | 0.0655 |
bzip7 | GRMZM2G131409 | 0.0358 |
ofp28 | cadtfr12 | 0.0406 |
GRMZM2G031733 | GRMZM2G065617 | 0.045 |
GRMZM2G031733 | GRMZM2G073908 | 0.0578 |
GRMZM2G031733 | GRMZM2G081464 | 0.069 |
GRMZM2G031733 | GRMZM2G141325 | 0.0563 |
GRMZM2G031733 | cadtfr12 | 0.0484 |
GRMZM2G031733 | sbt1 | 0.0533 |
GRMZM2G031733 | GRMZM2G468855 | 0.0446 |
GRMZM2G031733 | GRMZM5G854655 | 0.0489 |
GRMZM2G045239 | GRMZM2G065617 | 0.0564 |
GRMZM2G045239 | GRMZM2G081464 | 0.0469 |
GRMZM2G045239 | bzip85 | 0.0387 |
GRMZM2G045239 | prx35 | 0.0435 |
GRMZM2G045239 | GRMZM5G873767 | 0.0418 |
myb106 | cadtfr12 | 0.0351 |
GRMZM2G065617 | cadtfr12 | 0.0661 |
GRMZM2G065617 | GRMZM2G468855 | 0.036 |
GRMZM2G065617 | GRMZM5G830365 | 0.0351 |
GRMZM2G073908 | GRMZM2G017237 | 0.0552 |
GRMZM2G073908 | GRMZM2G091774 | 0.0622 |
GRMZM2G073908 | GRMZM2G104419 | 0.0355 |
GRMZM2G073908 | cadtfr12 | 0.0553 |
GRMZM2G073908 | ereb26 | 0.0516 |
GRMZM2G073908 | GRMZM2G421565 | 0.0422 |
GRMZM2G073908 | sbt1 | 0.1311 |
GRMZM2G017237 | GRMZM2G091774 | 0.0359 |
GRMZM2G017237 | sbt1 | 0.0396 |
GRMZM2G081464 | GRMZM2G141325 | 0.0436 |
GRMZM2G081464 | prx35 | 0.0899 |
GRMZM2G081464 | GRMZM5G854655 | 0.0654 |
GRMZM2G081464 | GRMZM5G873767 | 0.0592 |
GRMZM2G091774 | GRMZM2G421565 | 0.035 |
GRMZM2G091774 | sbt1 | 0.0869 |
GRMZM2G104419 | cadtfr12 | 0.0392 |
GRMZM2G114988 | cadtfr12 | 0.0502 |
GRMZM2G114988 | sbt1 | 0.048 |
bzip85 | GRMZM2G131409 | 0.0386 |
bzip85 | cadtfr12 | 0.0463 |
bzip85 | GRMZM5G873767 | 0.0596 |
GRMZM2G131409 | prx35 | 0.0479 |
GRMZM2G131409 | GRMZM5G854655 | 0.0596 |
GRMZM2G131409 | GRMZM5G873767 | 0.0789 |
GRMZM2G141325 | GRMZM5G854655 | 0.0429 |
GRMZM2G141325 | GRMZM5G873767 | 0.045 |
cadtfr12 | ereb26 | 0.0546 |
cadtfr12 | GRMZM2G374313 | 0.0487 |
cadtfr12 | sbt1 | 0.0557 |
cadtfr12 | GRMZM2G468855 | 0.0434 |
cadtfr12 | GRMZM5G830365 | 0.0798 |
cadtfr12 | GRMZM5G854655 | 0.0417 |
prx35 | GRMZM5G854655 | 0.0825 |
prx35 | GRMZM5G873767 | 0.1088 |
ereb26 | sbt1 | 0.0388 |
ereb26 | GRMZM2G450071 | 0.0376 |
ereb26 | GRMZM5G854655 | 0.0396 |
GRMZM2G374313 | GRMZM2G704406 | 0.0575 |
GRMZM2G374313 | GRMZM5G854655 | 0.0434 |
GRMZM2G449056 | GRMZM5G830365 | 0.0784 |
GRMZM2G468855 | GRMZM5G854655 | 0.0455 |
GRMZM5G830365 | GRMZM2G704349 | 0.0392 |
GRMZM5G854655 | GRMZM5G873767 | 0.0767 |