This page contains information for Module090, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC196710.3_FG013 | Module090 | ||||||
GRMZM2G027016 | Module090 | AT1G47530 | AT1G47530 | MATE efflux family protein | |||
AC199039.3_FG003 | Module090 | AT3G27860 | AT3G27860 | Tudor/PWWP/MBT superfamily protein | |||
GRMZM2G048763 | Module090 | AT5G12380 | ANNAT8 | annexin 8 | annexin 8 | ||
GRMZM2G027972 | wrky87 | Module090 | AT5G56270 | WRKY2 | WRKY DNA-binding protein 2 | WRKY DNA-binding protein 2 | WRKY |
GRMZM2G050937 | Module090 | AT4G34880 | AT4G34880 | Amidase family protein | |||
GRMZM2G051921 | Module090 | AT3G54420 | EP3 | homolog of carrot EP3-3 chitinase | homolog of carrot EP3-3 chitinase | ||
GRMZM2G010765 | Module090 | AT5G52450 | AT5G52450 | MATE efflux family protein | |||
GRMZM2G057483 | Module090 | AT5G48930 | HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | ||
GRMZM2G059064 | Module090 | ||||||
GRMZM2G063824 | Module090 | AT4G36670 | PMT6 | polyol/monosaccharide transporter 6 | Major facilitator superfamily protein | ||
GRMZM2G081214 | Module090 | AT4G08950 | EXO | EXORDIUM | Phosphate-responsive 1 family protein | ||
GRMZM2G100495 | Module090 | AT1G19530 | AT1G19530 | ||||
GRMZM2G130831 | Module090 | AT2G13620 | CHX15 | cation/hydrogen exchanger 15 | cation/hydrogen exchanger 15 | ||
GRMZM2G133006 | Module090 | AT5G52450 | AT5G52450 | MATE efflux family protein | |||
GRMZM2G059052 | Module090 | AT4G13240 | ROPGEF9 | ROP (rho of plants) guanine nucleotide exchange factor 9 | RHO guanyl-nucleotide exchange factor 9 | ||
GRMZM2G154090 | pht2 | Module090 | AT2G38940 | PHT1;4 | phosphate transporter 1;4 | phosphate transporter 1;4 | |
GRMZM2G159636 | Module090 | AT3G48140 | AT3G48140 | B12D protein | |||
GRMZM2G144440 | Module090 | AT5G40270 | AT5G40270 | HD domain-containing metal-dependent phosphohydrolase family protein | |||
GRMZM2G180516 | Module090 | AT2G05642 | AT2G05642 | Nucleic acid-binding, OB-fold-like protein | |||
GRMZM2G181540 | Module090 | AT5G67620 | AT5G67620 | ||||
GRMZM2G325612 | cko5 | Module090 | AT1G75450 | CKX5 | cytokinin oxidase 5 | cytokinin oxidase 5 | |
GRMZM2G332660 | Module090 | AT3G51850 | CPK13 | calcium-dependent protein kinase 13 | calcium-dependent protein kinase 13 | ||
GRMZM2G333408 | Module090 | ||||||
GRMZM2G336448 | Module090 | AT5G13750 | ZIFL1 | zinc induced facilitator-like 1 | zinc induced facilitator-like 1 | ||
GRMZM2G374817 | Module090 | ||||||
GRMZM2G402708 | Module090 | AT3G54510 | AT3G54510 | Early-responsive to dehydration stress protein (ERD4) | |||
AC195796.3_FG001 | Module090 | ||||||
GRMZM2G421126 | Module090 | AT4G19970 | AT4G19970 | ||||
GRMZM2G430755 | Module090 | AT2G13620 | CHX15 | cation/hydrogen exchanger 15 | cation/hydrogen exchanger 15 | ||
GRMZM2G454556 | Module090 | AT3G04720 | PR4 | pathogenesis-related 4 | pathogenesis-related 4 | ||
GRMZM5G802403 | Module090 | ||||||
GRMZM5G805505 | ereb87 | Module090 | AT4G17490 | ERF6 | ethylene responsive element binding factor 6 | ethylene responsive element binding factor 6 | AP2-EREBP |
GRMZM5G805874 | Module090 | AT1G15150 | AT1G15150 | MATE efflux family protein | |||
GRMZM5G871471 | Module090 | AT3G04520 | THA2 | threonine aldolase 2 | threonine aldolase 2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module090 | 35 | 1 | GO:0015291 | molecular_function | secondary active transmembrane transporter activity | 1.03E-09 | 7 | 167 |
Module090 | 35 | 2 | GO:0015297 | molecular_function | antiporter activity | 2.36E-09 | 6 | 101 |
Module090 | 35 | 3 | GO:0022804 | molecular_function | active transmembrane transporter activity | 1.81E-07 | 7 | 353 |
Module090 | 35 | 4 | GO:0015238 | molecular_function | drug transmembrane transporter activity | 3.72E-07 | 4 | 48 |
Module090 | 35 | 5 | GO:0090484 | molecular_function | drug transporter activity | 4.40E-07 | 4 | 50 |
Module090 | 35 | 6 | GO:0006855 | biological_process | drug transmembrane transport | 6.23E-07 | 4 | 45 |
Module090 | 35 | 7 | GO:0015893 | biological_process | drug transport | 6.82E-07 | 4 | 46 |
Module090 | 35 | 8 | GO:0042493 | biological_process | response to drug | 7.44E-07 | 4 | 47 |
Module090 | 35 | 9 | GO:0055085 | biological_process | transmembrane transport | 9.36E-07 | 9 | 766 |
Module090 | 35 | 10 | GO:0022857 | molecular_function | transmembrane transporter activity | 2.27E-06 | 8 | 753 |
Module090 | 35 | 11 | GO:0009624 | biological_process | response to nematode | 9.76E-06 | 4 | 89 |
Module090 | 35 | 12 | GO:0005215 | molecular_function | transporter activity | 1.36E-05 | 8 | 959 |
Module090 | 35 | 13 | GO:0044765 | biological_process | single-organism transport | 0.000155738 | 9 | 1438 |
Module090 | 35 | 14 | GO:1902578 | biological_process | single-organism localization | 0.000180857 | 9 | 1466 |
Module090 | 35 | 15 | GO:0015299 | molecular_function | solute:proton antiporter activity | 0.001011853 | 2 | 37 |
Module090 | 35 | 16 | GO:0015298 | molecular_function | solute:cation antiporter activity | 0.001124066 | 2 | 39 |
Module090 | 35 | 17 | GO:0009605 | biological_process | response to external stimulus | 0.001181005 | 6 | 814 |
Module090 | 35 | 18 | GO:0006810 | biological_process | transport | 0.001372697 | 9 | 1919 |
Module090 | 35 | 19 | GO:0051234 | biological_process | establishment of localization | 0.001431062 | 9 | 1930 |
Module090 | 35 | 20 | GO:0051179 | biological_process | localization | 0.001704017 | 9 | 1977 |
Module090 | 35 | 21 | GO:0043207 | biological_process | response to external biotic stimulus | 0.001890141 | 5 | 597 |
Module090 | 35 | 22 | GO:0051707 | biological_process | response to other organism | 0.001890141 | 5 | 597 |
Module090 | 35 | 23 | GO:0016020 | cellular_component | membrane | 0.001986779 | 12 | 4716 |
Module090 | 35 | 24 | GO:0051704 | biological_process | multi-organism process | 0.002018994 | 6 | 903 |
Module090 | 35 | 25 | GO:0009607 | biological_process | response to biotic stimulus | 0.002232361 | 5 | 620 |
Module090 | 35 | 26 | GO:0070001 | molecular_function | aspartic-type peptidase activity | 0.006620311 | 2 | 96 |
Module090 | 35 | 27 | GO:0004190 | molecular_function | aspartic-type endopeptidase activity | 0.006620311 | 2 | 96 |
Module090 | 35 | 28 | GO:0009061 | biological_process | anaerobic respiration | 0.007768533 | 1 | 5 |
Module090 | 35 | 29 | GO:0051238 | biological_process | sequestering of metal ion | 0.009315327 | 1 | 6 |
Module090 | 35 | 30 | GO:0003997 | molecular_function | acyl-CoA oxidase activity | 0.0101978 | 1 | 8 |
Module090 | 35 | 31 | GO:0015691 | biological_process | cadmium ion transport | 0.010859824 | 1 | 7 |
Module090 | 35 | 32 | GO:0050660 | molecular_function | flavin adenine dinucleotide binding | 0.011003744 | 2 | 125 |
Module090 | 35 | 33 | GO:0008061 | molecular_function | chitin binding | 0.011465539 | 1 | 9 |
Module090 | 35 | 34 | GO:0005544 | molecular_function | calcium-dependent phospholipid binding | 0.011465539 | 1 | 9 |
Module090 | 35 | 35 | GO:0010262 | biological_process | somatic embryogenesis | 0.012402028 | 1 | 8 |
Module090 | 35 | 36 | GO:0019139 | molecular_function | cytokinin dehydrogenase activity | 0.012731732 | 1 | 10 |
Module090 | 35 | 37 | GO:0044763 | biological_process | single-organism cellular process | 0.013585219 | 13 | 4840 |
Module090 | 35 | 38 | GO:0015078 | molecular_function | hydrogen ion transmembrane transporter activity | 0.014029817 | 2 | 142 |
Module090 | 35 | 39 | GO:0006811 | biological_process | ion transport | 0.014924888 | 4 | 629 |
Module090 | 35 | 40 | GO:0003995 | molecular_function | acyl-CoA dehydrogenase activity | 0.015259484 | 1 | 12 |
Module090 | 35 | 41 | GO:0055069 | biological_process | zinc ion homeostasis | 0.018547974 | 1 | 12 |
Module090 | 35 | 42 | GO:0005088 | molecular_function | Ras guanyl-nucleotide exchange factor activity | 0.019039559 | 1 | 15 |
Module090 | 35 | 43 | GO:0005089 | molecular_function | Rho guanyl-nucleotide exchange factor activity | 0.019039559 | 1 | 15 |
Module090 | 35 | 44 | GO:0016634 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | 0.019039559 | 1 | 15 |
Module090 | 35 | 45 | GO:0006817 | biological_process | phosphate ion transport | 0.020078759 | 1 | 13 |
Module090 | 35 | 46 | GO:0004568 | molecular_function | chitinase activity | 0.02029651 | 1 | 16 |
Module090 | 35 | 47 | GO:0005773 | cellular_component | vacuole | 0.020751047 | 4 | 838 |
Module090 | 35 | 48 | GO:0005315 | molecular_function | inorganic phosphate transmembrane transporter activity | 0.021551926 | 1 | 17 |
Module090 | 35 | 49 | GO:0006026 | biological_process | aminoglycan catabolic process | 0.024657483 | 1 | 16 |
Module090 | 35 | 50 | GO:0006030 | biological_process | chitin metabolic process | 0.024657483 | 1 | 16 |
Module090 | 35 | 51 | GO:0006032 | biological_process | chitin catabolic process | 0.024657483 | 1 | 16 |
Module090 | 35 | 52 | GO:1901072 | biological_process | glucosamine-containing compound catabolic process | 0.024657483 | 1 | 16 |
Module090 | 35 | 53 | GO:0046348 | biological_process | amino sugar catabolic process | 0.024657483 | 1 | 16 |
Module090 | 35 | 54 | GO:1901071 | biological_process | glucosamine-containing compound metabolic process | 0.026179192 | 1 | 17 |
Module090 | 35 | 55 | GO:0016884 | molecular_function | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | 0.02655829 | 1 | 21 |
Module090 | 35 | 56 | GO:0015077 | molecular_function | monovalent inorganic cation transmembrane transporter activity | 0.026924915 | 2 | 201 |
Module090 | 35 | 57 | GO:0006022 | biological_process | aminoglycan metabolic process | 0.027698639 | 1 | 18 |
Module090 | 35 | 58 | GO:0009690 | biological_process | cytokinin metabolic process | 0.029215828 | 1 | 19 |
Module090 | 35 | 59 | GO:0005085 | molecular_function | guanyl-nucleotide exchange factor activity | 0.031540252 | 1 | 25 |
Module090 | 35 | 60 | GO:0008762 | molecular_function | UDP-N-acetylmuramate dehydrogenase activity | 0.031540252 | 1 | 25 |
Module090 | 35 | 61 | GO:0016021 | cellular_component | integral component of membrane | 0.032087593 | 5 | 1436 |
Module090 | 35 | 62 | GO:0006812 | biological_process | cation transport | 0.0327359 | 3 | 457 |
Module090 | 35 | 63 | GO:0016645 | molecular_function | oxidoreductase activity, acting on the CH-NH group of donors | 0.034022117 | 1 | 27 |
Module090 | 35 | 64 | GO:0051235 | biological_process | maintenance of location | 0.036768013 | 1 | 24 |
Module090 | 35 | 65 | GO:0006040 | biological_process | amino sugar metabolic process | 0.036768013 | 1 | 24 |
Module090 | 35 | 66 | GO:0031224 | cellular_component | intrinsic component of membrane | 0.037791212 | 5 | 1498 |
Module090 | 35 | 67 | GO:0072507 | biological_process | divalent inorganic cation homeostasis | 0.03827172 | 1 | 25 |
Module090 | 35 | 68 | GO:0065008 | biological_process | regulation of biological quality | 0.038464953 | 3 | 487 |
Module090 | 35 | 69 | GO:0042221 | biological_process | response to chemical | 0.038677272 | 6 | 1681 |
Module090 | 35 | 70 | GO:0005886 | cellular_component | plasma membrane | 0.03885276 | 6 | 2055 |
Module090 | 35 | 71 | GO:0009793 | biological_process | embryo development ending in seed dormancy | 0.041075425 | 2 | 208 |
Module090 | 35 | 72 | GO:0034754 | biological_process | cellular hormone metabolic process | 0.041272431 | 1 | 27 |
Module090 | 35 | 73 | GO:0022891 | molecular_function | substrate-specific transmembrane transporter activity | 0.043943677 | 3 | 625 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC196710.3_FG013 | GRMZM2G159636 | 0.0763 |
AC196710.3_FG013 | GRMZM2G374817 | 0.1013 |
GRMZM2G027016 | GRMZM2G051921 | 0.0726 |
GRMZM2G027016 | GRMZM2G057483 | 0.1054 |
GRMZM2G027016 | GRMZM2G081214 | 0.0489 |
GRMZM2G027016 | GRMZM2G100495 | 0.0876 |
GRMZM2G027016 | GRMZM2G133006 | 0.0452 |
GRMZM2G027016 | cko5 | 0.0393 |
GRMZM2G027016 | GRMZM2G454556 | 0.0751 |
GRMZM2G027016 | GRMZM5G805874 | 0.0396 |
AC199039.3_FG003 | GRMZM2G180516 | 0.0366 |
GRMZM2G048763 | wrky87 | 0.044 |
GRMZM2G048763 | GRMZM2G051921 | 0.0367 |
GRMZM2G048763 | GRMZM2G057483 | 0.0798 |
GRMZM2G048763 | GRMZM2G100495 | 0.0909 |
GRMZM2G048763 | GRMZM2G130831 | 0.0584 |
GRMZM2G048763 | GRMZM2G180516 | 0.0736 |
GRMZM2G048763 | cko5 | 0.0841 |
GRMZM2G048763 | GRMZM2G430755 | 0.049 |
GRMZM2G048763 | GRMZM2G454556 | 0.0773 |
GRMZM2G048763 | ereb87 | 0.0411 |
wrky87 | GRMZM2G057483 | 0.0362 |
wrky87 | GRMZM2G100495 | 0.0466 |
GRMZM2G050937 | GRMZM2G059064 | 0.0529 |
GRMZM2G050937 | GRMZM2G100495 | 0.0649 |
GRMZM2G050937 | GRMZM2G130831 | 0.0506 |
GRMZM2G050937 | GRMZM2G402708 | 0.0489 |
GRMZM2G051921 | GRMZM2G057483 | 0.0505 |
GRMZM2G051921 | GRMZM2G100495 | 0.0691 |
GRMZM2G051921 | GRMZM2G180516 | 0.0384 |
GRMZM2G051921 | GRMZM2G421126 | 0.0363 |
GRMZM2G051921 | GRMZM2G454556 | 0.0871 |
GRMZM2G051921 | ereb87 | 0.0418 |
GRMZM2G010765 | GRMZM2G336448 | 0.0397 |
GRMZM2G057483 | GRMZM2G100495 | 0.056 |
GRMZM2G057483 | GRMZM2G133006 | 0.0536 |
GRMZM2G057483 | GRMZM2G180516 | 0.0372 |
GRMZM2G057483 | GRMZM2G421126 | 0.0504 |
GRMZM2G057483 | GRMZM2G454556 | 0.0573 |
GRMZM2G057483 | GRMZM5G805874 | 0.0364 |
GRMZM2G059064 | GRMZM2G454556 | 0.0351 |
GRMZM2G063824 | GRMZM2G100495 | 0.05 |
GRMZM2G063824 | GRMZM2G130831 | 0.0395 |
GRMZM2G063824 | cko5 | 0.0573 |
GRMZM2G063824 | ereb87 | 0.0601 |
GRMZM2G081214 | GRMZM2G100495 | 0.0519 |
GRMZM2G081214 | pht2 | 0.0492 |
GRMZM2G100495 | GRMZM2G130831 | 0.0603 |
GRMZM2G100495 | GRMZM2G133006 | 0.0542 |
GRMZM2G100495 | GRMZM2G180516 | 0.0733 |
GRMZM2G100495 | cko5 | 0.0713 |
GRMZM2G100495 | GRMZM2G402708 | 0.0628 |
GRMZM2G100495 | GRMZM2G454556 | 0.0684 |
GRMZM2G100495 | ereb87 | 0.0478 |
GRMZM2G100495 | GRMZM5G805874 | 0.0494 |
GRMZM2G130831 | GRMZM2G180516 | 0.066 |
GRMZM2G130831 | cko5 | 0.0564 |
GRMZM2G130831 | GRMZM2G421126 | 0.0357 |
GRMZM2G130831 | GRMZM2G430755 | 0.0585 |
GRMZM2G130831 | ereb87 | 0.0466 |
GRMZM2G133006 | GRMZM2G336448 | 0.0436 |
GRMZM2G133006 | GRMZM2G421126 | 0.0412 |
GRMZM2G059052 | GRMZM2G430755 | 0.0621 |
GRMZM2G159636 | GRMZM2G144440 | 0.0672 |
GRMZM2G159636 | GRMZM2G180516 | 0.0693 |
GRMZM2G159636 | GRMZM2G333408 | 0.0617 |
GRMZM2G159636 | GRMZM2G374817 | 0.0893 |
GRMZM2G159636 | GRMZM5G871471 | 0.0402 |
GRMZM2G144440 | GRMZM2G180516 | 0.0404 |
GRMZM2G144440 | GRMZM2G333408 | 0.1037 |
GRMZM2G144440 | GRMZM2G374817 | 0.0432 |
GRMZM2G144440 | GRMZM5G802403 | 0.0486 |
GRMZM2G144440 | GRMZM5G871471 | 0.0376 |
GRMZM2G180516 | GRMZM2G181540 | 0.0377 |
GRMZM2G180516 | cko5 | 0.1391 |
GRMZM2G180516 | GRMZM2G333408 | 0.0422 |
GRMZM2G180516 | GRMZM2G402708 | 0.0644 |
GRMZM2G180516 | GRMZM2G421126 | 0.0368 |
GRMZM2G180516 | GRMZM2G430755 | 0.1196 |
GRMZM2G180516 | GRMZM2G454556 | 0.0636 |
GRMZM2G180516 | ereb87 | 0.0572 |
GRMZM2G180516 | GRMZM5G871471 | 0.0393 |
cko5 | GRMZM2G421126 | 0.0487 |
cko5 | GRMZM2G430755 | 0.0898 |
GRMZM2G332660 | GRMZM2G421126 | 0.0632 |
GRMZM2G333408 | GRMZM2G374817 | 0.0378 |
GRMZM2G333408 | GRMZM5G871471 | 0.0393 |
GRMZM2G402708 | AC195796.3_FG001 | 0.0453 |
GRMZM2G402708 | GRMZM2G430755 | 0.0361 |
AC195796.3_FG001 | GRMZM2G454556 | 0.0383 |
GRMZM2G454556 | ereb87 | 0.0423 |