This page contains information for Module100, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G005066 | c1 | Module100 | AT5G49330 | MYB111 | myb domain protein 111 | myb domain protein 111 | MYB |
GRMZM2G006964 | ga2ox2 | Module100 | AT4G21200 | GA2OX8 | gibberellin 2-oxidase 8 | gibberellin 2-oxidase 8 | |
GRMZM2G011951 | Module100 | AT3G18590 | ENODL5 | early nodulin-like protein 5 | early nodulin-like protein 5 | ||
AC194405.3_FG021 | Module100 | AT1G19100 | DMS11 | DEFECTIVE IN MERISTEM SILENCING 11 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | ||
GRMZM2G012926 | Module100 | AT3G14470 | AT3G14470 | NB-ARC domain-containing disease resistance protein | |||
GRMZM2G004483 | Module100 | AT5G24930 | COL4 | CONSTANS-like 4 | CONSTANS-like 4 | C2C2-CO-like | |
GRMZM2G022679 | ga2ox3 | Module100 | AT1G78440 | ATGA2OX1 | Arabidopsis thaliana gibberellin 2-oxidase 1 | Arabidopsis thaliana gibberellin 2-oxidase 1 | |
GRMZM2G031724 | ga2ox10 | Module100 | AT1G78440 | ATGA2OX1 | Arabidopsis thaliana gibberellin 2-oxidase 1 | Arabidopsis thaliana gibberellin 2-oxidase 1 | |
GRMZM2G052685 | Module100 | AT1G42550 | PMI1 | PLASTID MOVEMENT IMPAIRED1 | plastid movement impaired1 | ||
GRMZM2G062458 | Module100 | AT4G00050 | UNE10 | unfertilized embryo sac 10 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH | |
GRMZM2G066291 | Module100 | AT1G14280 | PKS2 | phytochrome kinase substrate 2 | phytochrome kinase substrate 2 | ||
GRMZM2G069503 | Module100 | AT1G28590 | AT1G28590 | GDSL-like Lipase/Acylhydrolase superfamily protein | |||
GRMZM2G072814 | Module100 | ||||||
GRMZM2G073244 | Module100 | AT4G15480 | UGT84A1 | UDP-Glycosyltransferase superfamily protein | |||
GRMZM2G106443 | Module100 | AT4G15550 | IAGLU | indole-3-acetate beta-D-glucosyltransferase | indole-3-acetate beta-D-glucosyltransferase | ||
GRMZM2G107402 | Module100 | AT1G58290 | HEMA1 | Glutamyl-tRNA reductase family protein | |||
AC213521.3_FG005 | Module100 | AT1G58290 | HEMA1 | Glutamyl-tRNA reductase family protein | |||
GRMZM2G120938 | Module100 | AT5G22500 | FAR1 | fatty acid reductase 1 | fatty acid reductase 1 | ||
GRMZM2G133613 | Module100 | AT1G77810 | AT1G77810 | Galactosyltransferase family protein | |||
GRMZM2G134219 | Module100 | AT1G71950 | AT1G71950 | Proteinase inhibitor, propeptide | |||
GRMZM2G147279 | Module100 | AT5G07020 | AT5G07020 | proline-rich family protein | |||
GRMZM2G151903 | Module100 | AT1G33110 | AT1G33110 | MATE efflux family protein | |||
GRMZM2G154580 | Module100 | ||||||
GRMZM2G140355 | bzip80 | Module100 | AT5G11260 | HY5 | ELONGATED HYPOCOTYL 5 | Basic-leucine zipper (bZIP) transcription factor family protein | bZIP |
GRMZM2G157120 | Module100 | AT3G52740 | AT3G52740 | ||||
GRMZM2G098460 | Module100 | AT5G43260 | AT5G43260 | chaperone protein dnaJ-related | |||
GRMZM2G180272 | Module100 | AT1G48590 | AT1G48590 | Calcium-dependent lipid-binding (CaLB domain) family protein | |||
GRMZM2G346982 | Module100 | AT4G16790 | AT4G16790 | hydroxyproline-rich glycoprotein family protein | |||
GRMZM2G389155 | Module100 | AT5G23730 | RUP2 | REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 | Transducin/WD40 repeat-like superfamily protein | ||
GRMZM2G425728 | elip2 | Module100 | AT4G14690 | ELIP2 | EARLY LIGHT-INDUCIBLE PROTEIN 2 | Chlorophyll A-B binding family protein | |
GRMZM2G428379 | Module100 | AT2G29110 | GLR2.8 | glutamate receptor 2.8 | glutamate receptor 2.8 | ||
GRMZM2G470524 | Module100 | AT1G22380 | UGT85A3 | UDP-glucosyl transferase 85A3 | UDP-glucosyl transferase 85A3 | ||
GRMZM5G846082 | Module100 | AT4G00050 | UNE10 | unfertilized embryo sac 10 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module100 | 33 | 1 | GO:0008883 | molecular_function | glutamyl-tRNA reductase activity | 4.68E-06 | 2 | 3 |
Module100 | 33 | 2 | GO:0042440 | biological_process | pigment metabolic process | 1.77E-05 | 4 | 122 |
Module100 | 33 | 3 | GO:0010218 | biological_process | response to far red light | 2.07E-05 | 3 | 41 |
Module100 | 33 | 4 | GO:0010114 | biological_process | response to red light | 2.74E-05 | 3 | 45 |
Module100 | 33 | 5 | GO:0006779 | biological_process | porphyrin-containing compound biosynthetic process | 3.33E-05 | 3 | 48 |
Module100 | 33 | 6 | GO:0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.84E-05 | 3 | 52 |
Module100 | 33 | 7 | GO:0010224 | biological_process | response to UV-B | 4.00E-05 | 3 | 51 |
Module100 | 33 | 8 | GO:0033014 | biological_process | tetrapyrrole biosynthetic process | 5.03E-05 | 3 | 55 |
Module100 | 33 | 9 | GO:0016903 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors | 7.86E-05 | 3 | 66 |
Module100 | 33 | 10 | GO:0006778 | biological_process | porphyrin-containing compound metabolic process | 0.000122245 | 3 | 74 |
Module100 | 33 | 11 | GO:0009411 | biological_process | response to UV | 0.000127232 | 3 | 75 |
Module100 | 33 | 12 | GO:0033013 | biological_process | tetrapyrrole metabolic process | 0.000148505 | 3 | 79 |
Module100 | 33 | 13 | GO:0006783 | biological_process | heme biosynthetic process | 0.000151896 | 2 | 14 |
Module100 | 33 | 14 | GO:0046148 | biological_process | pigment biosynthetic process | 0.000225865 | 3 | 91 |
Module100 | 33 | 15 | GO:0042168 | biological_process | heme metabolic process | 0.000226471 | 2 | 17 |
Module100 | 33 | 16 | GO:0016706 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 0.000239307 | 3 | 96 |
Module100 | 33 | 17 | GO:0009416 | biological_process | response to light stimulus | 0.000276949 | 5 | 463 |
Module100 | 33 | 18 | GO:0009314 | biological_process | response to radiation | 0.000317967 | 5 | 477 |
Module100 | 33 | 19 | GO:0015995 | biological_process | chlorophyll biosynthetic process | 0.000457064 | 2 | 24 |
Module100 | 33 | 20 | GO:0051213 | molecular_function | dioxygenase activity | 0.000664534 | 3 | 136 |
Module100 | 33 | 21 | GO:0009639 | biological_process | response to red or far red light | 0.000832343 | 3 | 142 |
Module100 | 33 | 22 | GO:0051188 | biological_process | cofactor biosynthetic process | 0.001072736 | 3 | 155 |
Module100 | 33 | 23 | GO:0015994 | biological_process | chlorophyll metabolic process | 0.001757903 | 2 | 47 |
Module100 | 33 | 24 | GO:0016758 | molecular_function | transferase activity, transferring hexosyl groups | 0.002216095 | 4 | 445 |
Module100 | 33 | 25 | GO:0009637 | biological_process | response to blue light | 0.002486572 | 2 | 56 |
Module100 | 33 | 26 | GO:0052635 | molecular_function | C-20 gibberellin 2-beta-dioxygenase activity | 0.00255879 | 1 | 2 |
Module100 | 33 | 27 | GO:0031539 | biological_process | positive regulation of anthocyanin metabolic process | 0.002669731 | 1 | 2 |
Module100 | 33 | 28 | GO:0071492 | biological_process | cellular response to UV-A | 0.002669731 | 1 | 2 |
Module100 | 33 | 29 | GO:0070141 | biological_process | response to UV-A | 0.002669731 | 1 | 2 |
Module100 | 33 | 30 | GO:0043393 | biological_process | regulation of protein binding | 0.002669731 | 1 | 2 |
Module100 | 33 | 31 | GO:0043496 | biological_process | regulation of protein homodimerization activity | 0.002669731 | 1 | 2 |
Module100 | 33 | 32 | GO:0050661 | molecular_function | NADP binding | 0.003576988 | 2 | 70 |
Module100 | 33 | 33 | GO:0071490 | biological_process | cellular response to far red light | 0.00400207 | 1 | 3 |
Module100 | 33 | 34 | GO:0071486 | biological_process | cellular response to high light intensity | 0.00400207 | 1 | 3 |
Module100 | 33 | 35 | GO:0048531 | molecular_function | beta-1,3-galactosyltransferase activity | 0.005111344 | 1 | 4 |
Module100 | 33 | 36 | GO:0010117 | biological_process | photoprotection | 0.005332729 | 1 | 4 |
Module100 | 33 | 37 | GO:0046501 | biological_process | protoporphyrinogen IX metabolic process | 0.005332729 | 1 | 4 |
Module100 | 33 | 38 | GO:0006782 | biological_process | protoporphyrinogen IX biosynthetic process | 0.005332729 | 1 | 4 |
Module100 | 33 | 39 | GO:0051098 | biological_process | regulation of binding | 0.005332729 | 1 | 4 |
Module100 | 33 | 40 | GO:0016757 | molecular_function | transferase activity, transferring glycosyl groups | 0.005627472 | 4 | 577 |
Module100 | 33 | 41 | GO:0030288 | cellular_component | outer membrane-bounded periplasmic space | 0.005956303 | 1 | 9 |
Module100 | 33 | 42 | GO:0030313 | cellular_component | cell envelope | 0.005956303 | 1 | 9 |
Module100 | 33 | 43 | GO:0080019 | molecular_function | fatty-acyl-CoA reductase (alcohol-forming) activity | 0.006385287 | 1 | 5 |
Module100 | 33 | 44 | GO:0042753 | biological_process | positive regulation of circadian rhythm | 0.006661708 | 1 | 5 |
Module100 | 33 | 45 | GO:0042597 | cellular_component | periplasmic space | 0.007275788 | 1 | 11 |
Module100 | 33 | 46 | GO:0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity | 0.007657676 | 1 | 6 |
Module100 | 33 | 47 | GO:0071484 | biological_process | cellular response to light intensity | 0.007989011 | 1 | 6 |
Module100 | 33 | 48 | GO:0051186 | biological_process | cofactor metabolic process | 0.008306916 | 3 | 320 |
Module100 | 33 | 49 | GO:0071491 | biological_process | cellular response to red light | 0.009314638 | 1 | 7 |
Module100 | 33 | 50 | GO:0010380 | biological_process | regulation of chlorophyll biosynthetic process | 0.009314638 | 1 | 7 |
Module100 | 33 | 51 | GO:0008066 | molecular_function | glutamate receptor activity | 0.0101978 | 1 | 8 |
Module100 | 33 | 52 | GO:0005230 | molecular_function | extracellular ligand-gated ion channel activity | 0.0101978 | 1 | 8 |
Module100 | 33 | 53 | GO:0005231 | molecular_function | excitatory extracellular ligand-gated ion channel activity | 0.0101978 | 1 | 8 |
Module100 | 33 | 54 | GO:0005234 | molecular_function | extracellular-glutamate-gated ion channel activity | 0.0101978 | 1 | 8 |
Module100 | 33 | 55 | GO:0004970 | molecular_function | ionotropic glutamate receptor activity | 0.0101978 | 1 | 8 |
Module100 | 33 | 56 | GO:0034605 | biological_process | cellular response to heat | 0.010638592 | 1 | 8 |
Module100 | 33 | 57 | GO:1901463 | biological_process | regulation of tetrapyrrole biosynthetic process | 0.010638592 | 1 | 8 |
Module100 | 33 | 58 | GO:0034644 | biological_process | cellular response to UV | 0.011960875 | 1 | 9 |
Module100 | 33 | 59 | GO:0016491 | molecular_function | oxidoreductase activity | 0.012323172 | 6 | 1587 |
Module100 | 33 | 60 | GO:0090056 | biological_process | regulation of chlorophyll metabolic process | 0.013281488 | 1 | 10 |
Module100 | 33 | 61 | GO:0080167 | biological_process | response to karrikin | 0.013529791 | 2 | 134 |
Module100 | 33 | 62 | GO:0016705 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 0.014091458 | 3 | 403 |
Module100 | 33 | 63 | GO:0009740 | biological_process | gibberellic acid mediated signaling pathway | 0.015917716 | 1 | 12 |
Module100 | 33 | 64 | GO:1901401 | biological_process | regulation of tetrapyrrole metabolic process | 0.015917716 | 1 | 12 |
Module100 | 33 | 65 | GO:0009638 | biological_process | phototropism | 0.015917716 | 1 | 12 |
Module100 | 33 | 66 | GO:0022834 | molecular_function | ligand-gated channel activity | 0.016521048 | 1 | 13 |
Module100 | 33 | 67 | GO:0015276 | molecular_function | ligand-gated ion channel activity | 0.016521048 | 1 | 13 |
Module100 | 33 | 68 | GO:0031537 | biological_process | regulation of anthocyanin metabolic process | 0.017233334 | 1 | 13 |
Module100 | 33 | 69 | GO:0010476 | biological_process | gibberellin mediated signaling pathway | 0.017233334 | 1 | 13 |
Module100 | 33 | 70 | GO:0010030 | biological_process | positive regulation of seed germination | 0.017233334 | 1 | 13 |
Module100 | 33 | 71 | GO:0051193 | biological_process | regulation of cofactor metabolic process | 0.018547291 | 1 | 14 |
Module100 | 33 | 72 | GO:0071370 | biological_process | cellular response to gibberellin stimulus | 0.018547291 | 1 | 14 |
Module100 | 33 | 73 | GO:0071483 | biological_process | cellular response to blue light | 0.023786545 | 1 | 18 |
Module100 | 33 | 74 | GO:0010099 | biological_process | regulation of photomorphogenesis | 0.025092225 | 1 | 19 |
Module100 | 33 | 75 | GO:0009685 | biological_process | gibberellin metabolic process | 0.025092225 | 1 | 19 |
Module100 | 33 | 76 | GO:0048580 | biological_process | regulation of post-embryonic development | 0.026599209 | 2 | 192 |
Module100 | 33 | 77 | GO:0071489 | biological_process | cellular response to red or far red light | 0.027698639 | 1 | 21 |
Module100 | 33 | 78 | GO:2000030 | biological_process | regulation of response to red or far red light | 0.027698639 | 1 | 21 |
Module100 | 33 | 79 | GO:0042752 | biological_process | regulation of circadian rhythm | 0.03029847 | 1 | 23 |
Module100 | 33 | 80 | GO:0004888 | molecular_function | transmembrane signaling receptor activity | 0.031540252 | 1 | 25 |
Module100 | 33 | 81 | GO:0016101 | biological_process | diterpenoid metabolic process | 0.031595923 | 1 | 24 |
Module100 | 33 | 82 | GO:0046283 | biological_process | anthocyanin-containing compound metabolic process | 0.032891736 | 1 | 25 |
Module100 | 33 | 83 | GO:0009628 | biological_process | response to abiotic stimulus | 0.034998608 | 5 | 1427 |
Module100 | 33 | 84 | GO:0099600 | #N/A | transmembrane receptor activity | 0.037733561 | 1 | 30 |
Module100 | 33 | 85 | GO:0065009 | biological_process | regulation of molecular function | 0.039162636 | 2 | 237 |
Module100 | 33 | 86 | GO:0044710 | biological_process | single-organism metabolic process | 0.041234979 | 9 | 3802 |
Module100 | 33 | 87 | GO:0055114 | biological_process | oxidation-reduction process | 0.041710316 | 5 | 1495 |
Module100 | 33 | 88 | GO:2000026 | biological_process | regulation of multicellular organismal development | 0.047598688 | 2 | 264 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
c1 | ga2ox3 | 0.0917 |
c1 | GRMZM2G052685 | 0.0648 |
c1 | GRMZM2G062458 | 0.0387 |
c1 | GRMZM2G073244 | 0.0417 |
c1 | GRMZM2G106443 | 0.0474 |
c1 | GRMZM2G151903 | 0.0389 |
c1 | GRMZM2G154580 | 0.0482 |
c1 | GRMZM2G157120 | 0.0475 |
c1 | GRMZM2G180272 | 0.0372 |
c1 | GRMZM2G389155 | 0.0486 |
c1 | elip2 | 0.0913 |
c1 | GRMZM2G428379 | 0.0404 |
ga2ox2 | ga2ox3 | 0.0564 |
GRMZM2G011951 | AC194405.3_FG021 | 0.0459 |
AC194405.3_FG021 | GRMZM2G134219 | 0.0723 |
AC194405.3_FG021 | GRMZM2G157120 | 0.0667 |
GRMZM2G012926 | GRMZM2G052685 | 0.0374 |
GRMZM2G012926 | GRMZM2G133613 | 0.037 |
GRMZM2G004483 | GRMZM2G154580 | 0.0488 |
ga2ox3 | ga2ox10 | 0.0494 |
ga2ox10 | GRMZM2G120938 | 0.0395 |
GRMZM2G062458 | GRMZM2G389155 | 0.0452 |
GRMZM2G062458 | GRMZM5G846082 | 0.0497 |
GRMZM2G066291 | GRMZM2G154580 | 0.0423 |
GRMZM2G066291 | GRMZM2G346982 | 0.0355 |
GRMZM2G066291 | GRMZM2G389155 | 0.0367 |
GRMZM2G069503 | GRMZM2G157120 | 0.0353 |
GRMZM2G072814 | GRMZM2G157120 | 0.0624 |
GRMZM2G072814 | elip2 | 0.0389 |
GRMZM2G073244 | GRMZM2G157120 | 0.0642 |
GRMZM2G073244 | GRMZM2G180272 | 0.0473 |
GRMZM2G107402 | AC213521.3_FG005 | 0.0639 |
GRMZM2G107402 | GRMZM2G157120 | 0.0373 |
AC213521.3_FG005 | GRMZM2G157120 | 0.0358 |
GRMZM2G134219 | GRMZM2G157120 | 0.0672 |
GRMZM2G147279 | elip2 | 0.0451 |
GRMZM2G154580 | bzip80 | 0.0362 |
GRMZM2G154580 | GRMZM2G389155 | 0.0357 |
bzip80 | GRMZM2G157120 | 0.0572 |
bzip80 | elip2 | 0.04 |
GRMZM2G157120 | GRMZM2G098460 | 0.0351 |
GRMZM2G157120 | elip2 | 0.049 |
GRMZM2G157120 | GRMZM2G428379 | 0.0358 |
GRMZM2G428379 | GRMZM2G470524 | 0.039 |