This page contains information for Module101, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC201891.3_FG001 | Module101 | AT3G03070 | AT3G03070 | NADH-ubiquinone oxidoreductase-related | |||
AC204931.3_FG004 | Module101 | ||||||
GRMZM2G004521 | Module101 | AT5G60570 | AT5G60570 | Galactose oxidase/kelch repeat superfamily protein | |||
AC186845.4_FG009 | Module101 | ||||||
GRMZM2G021369 | ereb136 | Module101 | AT1G44830 | AT1G44830 | Integrase-type DNA-binding superfamily protein | AP2-EREBP | |
GRMZM2G035726 | Module101 | AT5G43060 | RD21B | esponsive to dehydration 21B | Granulin repeat cysteine protease family protein | ||
GRMZM2G036411 | Module101 | AT2G26250 | KCS10 | 3-ketoacyl-CoA synthase 10 | 3-ketoacyl-CoA synthase 10 | ||
GRMZM2G070849 | pza03168 | Module101 | AT3G06490 | MYB108 | myb domain protein 108 | myb domain protein 108 | MYB |
GRMZM2G078097 | Module101 | AT1G64660 | MGL | methionine gamma-lyase | methionine gamma-lyase | ||
GRMZM2G102811 | Module101 | AT1G53280 | DJ1B | DJ-1 homolog B | Class I glutamine amidotransferase-like superfamily protein | ||
GRMZM2G121395 | Module101 | AT4G01130 | AT4G01130 | GDSL-like Lipase/Acylhydrolase superfamily protein | |||
GRMZM2G127812 | Module101 | AT1G53280 | DJ1B | DJ-1 homolog B | Class I glutamine amidotransferase-like superfamily protein | ||
GRMZM2G161792 | Module101 | AT3G12120 | FAD2 | fatty acid desaturase 2 | fatty acid desaturase 2 | ||
GRMZM2G166603 | Module101 | AT1G47128 | RD21A | responsive to dehydration 21A | Granulin repeat cysteine protease family protein | ||
GRMZM2G181536 | Module101 | AT3G62560 | AT3G62560 | Ras-related small GTP-binding family protein | |||
GRMZM2G318942 | Module101 | AT2G44100 | GDI1 | guanosine nucleotide diphosphate dissociation inhibitor 1 | guanosine nucleotide diphosphate dissociation inhibitor 1 | ||
GRMZM2G360624 | Module101 | AT1G09390 | AT1G09390 | GDSL-like Lipase/Acylhydrolase superfamily protein | |||
GRMZM2G036631 | Module101 | AT5G05365 | AT5G05365 | Heavy metal transport/detoxification superfamily protein | |||
GRMZM2G379563 | Module101 | AT4G22920 | NYE1 | NON-YELLOWING 1 | non-yellowing 1 | ||
GRMZM2G404249 | hsp18a | Module101 | AT5G12020 | HSP17.6II | 17.6 kDa class II heat shock protein | 17.6 kDa class II heat shock protein | |
GRMZM2G412503 | Module101 | AT1G07660 | AT1G07660 | Histone superfamily protein | |||
GRMZM2G426067 | Module101 | AT5G41460 | AT5G41460 | Protein of unknown function (DUF604) | |||
GRMZM2G428924 | Module101 | AT2G33590 | CRL1 | CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 | NAD(P)-binding Rossmann-fold superfamily protein | ||
GRMZM2G441932 | Module101 | ||||||
GRMZM2G465430 | Module101 | AT5G47120 | BI1 | BAX inhibitor 1 | BAX inhibitor 1 | ||
GRMZM2G700981 | Module101 | AT4G34700 | CIB22 | B22 subunit of eukaryotic mitochondrial Complex I | LYR family of Fe/S cluster biogenesis protein | ||
GRMZM5G820287 | Module101 | AT5G65110 | ACX2 | acyl-CoA oxidase 2 | acyl-CoA oxidase 2 | ||
GRMZM5G824698 | Module101 | AT1G78240 | TSD2 | TUMOROUS SHOOT DEVELOPMENT 2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | ||
GRMZM5G831308 | Module101 | AT4G08900 | ARGAH1 | arginine amidohydrolase 1 | arginase | ||
GRMZM5G873780 | Module101 | ||||||
GRMZM5G874545 | gras15 | Module101 | AT1G14920 | GAI | GIBBERELLIC ACID INSENSITIVE | GRAS family transcription factor family protein | GRAS |
GRMZM5G899188 | Module101 | AT5G12020 | HSP17.6II | 17.6 kDa class II heat shock protein | 17.6 kDa class II heat shock protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module101 | 32 | 1 | GO:0010035 | biological_process | response to inorganic substance | 0.000721892 | 6 | 829 |
Module101 | 32 | 2 | GO:0009408 | biological_process | response to heat | 0.001310699 | 3 | 157 |
Module101 | 32 | 3 | GO:0010289 | biological_process | homogalacturonan biosynthetic process | 0.002817944 | 1 | 2 |
Module101 | 32 | 4 | GO:0009445 | biological_process | putrescine metabolic process | 0.002817944 | 1 | 2 |
Module101 | 32 | 5 | GO:0042542 | biological_process | response to hydrogen peroxide | 0.003071744 | 2 | 59 |
Module101 | 32 | 6 | GO:0006631 | biological_process | fatty acid metabolic process | 0.003472556 | 3 | 221 |
Module101 | 32 | 7 | GO:0009644 | biological_process | response to high light intensity | 0.003604158 | 2 | 64 |
Module101 | 32 | 8 | GO:0016720 | molecular_function | delta12-fatty acid dehydrogenase activity | 0.003835846 | 1 | 3 |
Module101 | 32 | 9 | GO:0006972 | biological_process | hyperosmotic response | 0.00394284 | 2 | 67 |
Module101 | 32 | 10 | GO:0010394 | biological_process | homogalacturonan metabolic process | 0.004224094 | 1 | 3 |
Module101 | 32 | 11 | GO:0006983 | biological_process | ER overload response | 0.004224094 | 1 | 3 |
Module101 | 32 | 12 | GO:0006984 | biological_process | ER-nucleus signaling pathway | 0.004224094 | 1 | 3 |
Module101 | 32 | 13 | GO:0006629 | biological_process | lipid metabolic process | 0.005059203 | 5 | 835 |
Module101 | 32 | 14 | GO:0042221 | biological_process | response to chemical | 0.005979263 | 7 | 1681 |
Module101 | 32 | 15 | GO:0016054 | biological_process | organic acid catabolic process | 0.006128558 | 2 | 84 |
Module101 | 32 | 16 | GO:0046395 | biological_process | carboxylic acid catabolic process | 0.006128558 | 2 | 84 |
Module101 | 32 | 17 | GO:0005093 | molecular_function | Rab GDP-dissociation inhibitor activity | 0.006385287 | 1 | 5 |
Module101 | 32 | 18 | GO:0045485 | molecular_function | omega-6 fatty acid desaturase activity | 0.006385287 | 1 | 5 |
Module101 | 32 | 19 | GO:0008234 | molecular_function | cysteine-type peptidase activity | 0.006889911 | 2 | 98 |
Module101 | 32 | 20 | GO:0010304 | biological_process | PSII associated light-harvesting complex II catabolic process | 0.00703076 | 1 | 5 |
Module101 | 32 | 21 | GO:0044712 | biological_process | single-organism catabolic process | 0.007544121 | 3 | 292 |
Module101 | 32 | 22 | GO:0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines | 0.007657676 | 1 | 6 |
Module101 | 32 | 23 | GO:0009642 | biological_process | response to light intensity | 0.008258585 | 2 | 98 |
Module101 | 32 | 24 | GO:0071216 | biological_process | cellular response to biotic stimulus | 0.00843128 | 1 | 6 |
Module101 | 32 | 25 | GO:0006591 | biological_process | ornithine metabolic process | 0.00843128 | 1 | 6 |
Module101 | 32 | 26 | GO:0006527 | biological_process | arginine catabolic process | 0.00843128 | 1 | 6 |
Module101 | 32 | 27 | GO:0052325 | biological_process | cell wall pectin biosynthetic process | 0.00982993 | 1 | 7 |
Module101 | 32 | 28 | GO:0044282 | biological_process | small molecule catabolic process | 0.009955884 | 2 | 108 |
Module101 | 32 | 29 | GO:0003997 | molecular_function | acyl-CoA oxidase activity | 0.0101978 | 1 | 8 |
Module101 | 32 | 30 | GO:0051082 | molecular_function | unfolded protein binding | 0.010503985 | 2 | 122 |
Module101 | 32 | 31 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 0.010858047 | 2 | 113 |
Module101 | 32 | 32 | GO:0005092 | molecular_function | GDP-dissociation inhibitor activity | 0.012731732 | 1 | 10 |
Module101 | 32 | 33 | GO:0000302 | biological_process | response to reactive oxygen species | 0.01336638 | 2 | 126 |
Module101 | 32 | 34 | GO:0003950 | molecular_function | NAD+ ADP-ribosyltransferase activity | 0.013996379 | 1 | 11 |
Module101 | 32 | 35 | GO:0052546 | biological_process | cell wall pectin metabolic process | 0.014014672 | 1 | 10 |
Module101 | 32 | 36 | GO:0045489 | biological_process | pectin biosynthetic process | 0.014014672 | 1 | 10 |
Module101 | 32 | 37 | GO:0006570 | biological_process | tyrosine metabolic process | 0.014014672 | 1 | 10 |
Module101 | 32 | 38 | GO:0003995 | molecular_function | acyl-CoA dehydrogenase activity | 0.015259484 | 1 | 12 |
Module101 | 32 | 39 | GO:0043069 | biological_process | negative regulation of programmed cell death | 0.015405859 | 1 | 11 |
Module101 | 32 | 40 | GO:0030695 | molecular_function | GTPase regulator activity | 0.017781072 | 1 | 14 |
Module101 | 32 | 41 | GO:0009065 | biological_process | glutamine family amino acid catabolic process | 0.018182655 | 1 | 13 |
Module101 | 32 | 42 | GO:0032787 | biological_process | monocarboxylic acid metabolic process | 0.018980117 | 3 | 411 |
Module101 | 32 | 43 | GO:0016634 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | 0.019039559 | 1 | 15 |
Module101 | 32 | 44 | GO:0006525 | biological_process | arginine metabolic process | 0.01956827 | 1 | 14 |
Module101 | 32 | 45 | GO:0060548 | biological_process | negative regulation of cell death | 0.020952032 | 1 | 15 |
Module101 | 32 | 46 | GO:0006560 | biological_process | proline metabolic process | 0.020952032 | 1 | 15 |
Module101 | 32 | 47 | GO:0046686 | biological_process | response to cadmium ion | 0.021772226 | 3 | 433 |
Module101 | 32 | 48 | GO:0009266 | biological_process | response to temperature stimulus | 0.023661964 | 3 | 447 |
Module101 | 32 | 49 | GO:0000038 | biological_process | very long-chain fatty acid metabolic process | 0.023714007 | 1 | 17 |
Module101 | 32 | 50 | GO:0015996 | biological_process | chlorophyll catabolic process | 0.023714007 | 1 | 17 |
Module101 | 32 | 51 | GO:0046149 | biological_process | pigment catabolic process | 0.025092225 | 1 | 18 |
Module101 | 32 | 52 | GO:0045488 | biological_process | pectin metabolic process | 0.025092225 | 1 | 18 |
Module101 | 32 | 53 | GO:0010393 | biological_process | galacturonan metabolic process | 0.025092225 | 1 | 18 |
Module101 | 32 | 54 | GO:0044248 | biological_process | cellular catabolic process | 0.027106616 | 3 | 471 |
Module101 | 32 | 55 | GO:0048037 | molecular_function | cofactor binding | 0.027688236 | 3 | 521 |
Module101 | 32 | 56 | GO:0060589 | molecular_function | nucleoside-triphosphatase regulator activity | 0.027806064 | 1 | 22 |
Module101 | 32 | 57 | GO:0051187 | biological_process | cofactor catabolic process | 0.027843133 | 1 | 20 |
Module101 | 32 | 58 | GO:0033015 | biological_process | tetrapyrrole catabolic process | 0.027843133 | 1 | 20 |
Module101 | 32 | 59 | GO:0006787 | biological_process | porphyrin-containing compound catabolic process | 0.027843133 | 1 | 20 |
Module101 | 32 | 60 | GO:0005783 | cellular_component | endoplasmic reticulum | 0.028132885 | 3 | 479 |
Module101 | 32 | 61 | GO:0070592 | biological_process | cell wall polysaccharide biosynthetic process | 0.029215828 | 1 | 21 |
Module101 | 32 | 62 | GO:0034976 | biological_process | response to endoplasmic reticulum stress | 0.030586686 | 1 | 22 |
Module101 | 32 | 63 | GO:0070589 | biological_process | cellular component macromolecule biosynthetic process | 0.03195571 | 1 | 23 |
Module101 | 32 | 64 | GO:0044038 | biological_process | cell wall macromolecule biosynthetic process | 0.03195571 | 1 | 23 |
Module101 | 32 | 65 | GO:0006595 | biological_process | polyamine metabolic process | 0.03195571 | 1 | 23 |
Module101 | 32 | 66 | GO:0006635 | biological_process | fatty acid beta-oxidation | 0.033322903 | 1 | 24 |
Module101 | 32 | 67 | GO:0016717 | molecular_function | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 0.034022117 | 1 | 27 |
Module101 | 32 | 68 | GO:0010038 | biological_process | response to metal ion | 0.034773611 | 3 | 519 |
Module101 | 32 | 69 | GO:1901700 | biological_process | response to oxygen-containing compound | 0.035455603 | 4 | 910 |
Module101 | 32 | 70 | GO:0006457 | biological_process | protein folding | 0.035946151 | 2 | 214 |
Module101 | 32 | 71 | GO:0009062 | biological_process | fatty acid catabolic process | 0.036051802 | 1 | 26 |
Module101 | 32 | 72 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.036455782 | 4 | 918 |
Module101 | 32 | 73 | GO:0044255 | biological_process | cellular lipid metabolic process | 0.038273081 | 3 | 539 |
Module101 | 32 | 74 | GO:0043436 | biological_process | oxoacid metabolic process | 0.038506483 | 4 | 934 |
Module101 | 32 | 75 | GO:0006082 | biological_process | organic acid metabolic process | 0.038767552 | 4 | 936 |
Module101 | 32 | 76 | GO:0019395 | biological_process | fatty acid oxidation | 0.038773402 | 1 | 28 |
Module101 | 32 | 77 | GO:0043067 | biological_process | regulation of programmed cell death | 0.038773402 | 1 | 28 |
Module101 | 32 | 78 | GO:0072329 | biological_process | monocarboxylic acid catabolic process | 0.041487721 | 1 | 30 |
Module101 | 32 | 79 | GO:0009414 | biological_process | response to water deprivation | 0.045270172 | 2 | 243 |
Module101 | 32 | 80 | GO:0034440 | biological_process | lipid oxidation | 0.04689459 | 1 | 34 |
Module101 | 32 | 81 | GO:0010941 | biological_process | regulation of cell death | 0.04689459 | 1 | 34 |
Module101 | 32 | 82 | GO:0097164 | biological_process | ammonium ion metabolic process | 0.048241786 | 1 | 35 |
Module101 | 32 | 83 | GO:0009415 | biological_process | response to water | 0.048330312 | 2 | 252 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC201891.3_FG001 | GRMZM2G127812 | 0.0407 |
AC204931.3_FG004 | GRMZM2G441932 | 0.1194 |
AC204931.3_FG004 | GRMZM2G700981 | 0.083 |
GRMZM2G004521 | GRMZM2G078097 | 0.0421 |
GRMZM2G004521 | GRMZM5G824698 | 0.0543 |
AC186845.4_FG009 | ereb136 | 0.0475 |
AC186845.4_FG009 | GRMZM2G102811 | 0.0406 |
AC186845.4_FG009 | gras15 | 0.0644 |
AC186845.4_FG009 | GRMZM5G899188 | 0.0408 |
ereb136 | GRMZM2G102811 | 0.0885 |
ereb136 | GRMZM2G121395 | 0.0493 |
ereb136 | GRMZM2G127812 | 0.0511 |
ereb136 | GRMZM2G379563 | 0.0535 |
ereb136 | GRMZM2G465430 | 0.0556 |
ereb136 | gras15 | 0.0591 |
GRMZM2G035726 | GRMZM2G166603 | 0.1002 |
GRMZM2G035726 | GRMZM5G820287 | 0.0541 |
GRMZM2G036411 | GRMZM2G441932 | 0.0477 |
pza03168 | GRMZM2G127812 | 0.0388 |
GRMZM2G078097 | GRMZM2G102811 | 0.0816 |
GRMZM2G102811 | GRMZM2G127812 | 0.287 |
GRMZM2G102811 | GRMZM2G360624 | 0.0485 |
GRMZM2G102811 | GRMZM2G379563 | 0.0578 |
GRMZM2G102811 | GRMZM2G412503 | 0.0453 |
GRMZM2G102811 | GRMZM2G441932 | 0.0562 |
GRMZM2G102811 | gras15 | 0.0505 |
GRMZM2G102811 | GRMZM5G899188 | 0.0486 |
GRMZM2G121395 | GRMZM2G379563 | 0.0646 |
GRMZM2G121395 | GRMZM2G465430 | 0.0362 |
GRMZM2G121395 | GRMZM5G820287 | 0.0369 |
GRMZM2G127812 | GRMZM2G379563 | 0.0717 |
GRMZM2G127812 | GRMZM2G426067 | 0.042 |
GRMZM2G127812 | GRMZM2G428924 | 0.0489 |
GRMZM2G127812 | GRMZM2G441932 | 0.0626 |
GRMZM2G127812 | GRMZM5G873780 | 0.0367 |
GRMZM2G127812 | gras15 | 0.0416 |
GRMZM2G127812 | GRMZM5G899188 | 0.0448 |
GRMZM2G161792 | GRMZM2G465430 | 0.0435 |
GRMZM2G166603 | GRMZM2G379563 | 0.0406 |
GRMZM2G166603 | GRMZM5G820287 | 0.0364 |
GRMZM2G166603 | GRMZM5G831308 | 0.0351 |
GRMZM2G181536 | GRMZM2G441932 | 0.049 |
GRMZM2G318942 | GRMZM2G428924 | 0.0443 |
GRMZM2G360624 | GRMZM2G036631 | 0.041 |
GRMZM2G360624 | GRMZM2G379563 | 0.0471 |
GRMZM2G360624 | GRMZM2G426067 | 0.0374 |
GRMZM2G360624 | GRMZM2G428924 | 0.0396 |
GRMZM2G360624 | GRMZM5G873780 | 0.0658 |
GRMZM2G360624 | gras15 | 0.0636 |
GRMZM2G360624 | GRMZM5G899188 | 0.0655 |
GRMZM2G379563 | GRMZM2G428924 | 0.0545 |
GRMZM2G379563 | GRMZM2G465430 | 0.0427 |
GRMZM2G379563 | GRMZM5G820287 | 0.0411 |
GRMZM2G379563 | GRMZM5G831308 | 0.0451 |
GRMZM2G379563 | GRMZM5G899188 | 0.072 |
hsp18a | GRMZM5G899188 | 0.1886 |
GRMZM2G426067 | GRMZM2G428924 | 0.0405 |
GRMZM2G426067 | GRMZM5G873780 | 0.0567 |
GRMZM2G426067 | gras15 | 0.067 |
GRMZM2G428924 | gras15 | 0.041 |
GRMZM2G428924 | GRMZM5G899188 | 0.0472 |
GRMZM2G441932 | GRMZM2G700981 | 0.0863 |
GRMZM2G465430 | GRMZM5G899188 | 0.0587 |
GRMZM5G873780 | gras15 | 0.1004 |