This page contains information for Module102, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC205562.3_FG002 | wrky97 | Module102 | AT4G23810 | WRKY53 | WRKY family transcription factor | WRKY | |
GRMZM2G026889 | Module102 | AT2G35710 | PGSIP7 | plant glycogenin-like starch initiation protein 7 | Nucleotide-diphospho-sugar transferases superfamily protein | ||
GRMZM2G031062 | hagtf7 | Module102 | AT2G32030 | AT2G32030 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | GNAT | |
GRMZM2G032602 | Module102 | AT4G26090 | RPS2 | RESISTANT TO P. SYRINGAE 2 | NB-ARC domain-containing disease resistance protein | ||
GRMZM2G036703 | wrky115 | Module102 | AT2G38470 | WRKY33 | WRKY DNA-binding protein 33 | WRKY DNA-binding protein 33 | WRKY |
GRMZM2G054900 | Module102 | AT4G33050 | EDA39 | embryo sac development arrest 39 | calmodulin-binding family protein | ||
GRMZM2G055052 | Module102 | AT5G37490 | AT5G37490 | ARM repeat superfamily protein | |||
GRMZM2G027958 | Module102 | AT2G31880 | SOBIR1 | SUPPRESSOR OF BIR1 1 | Leucine-rich repeat protein kinase family protein | ||
GRMZM2G074735 | Module102 | AT3G17980 | C2 | C2 domain | Calcium-dependent lipid-binding (CaLB domain) family protein | ||
GRMZM2G079323 | Module102 | AT5G53500 | AT5G53500 | Transducin/WD40 repeat-like superfamily protein | |||
GRMZM2G111657 | Module102 | AT3G29400 | EXO70E1 | exocyst subunit exo70 family protein E1 | exocyst subunit exo70 family protein E1 | ||
GRMZM2G120001 | Module102 | ||||||
GRMZM2G138259 | Module102 | AT1G13520 | AT1G13520 | Protein of unknown function (DUF1262) | |||
GRMZM2G138370 | Module102 | AT1G78410 | AT1G78410 | VQ motif-containing protein | |||
GRMZM2G040828 | Module102 | AT5G47360 | AT5G47360 | Tetratricopeptide repeat (TPR)-like superfamily protein | |||
GRMZM2G143139 | Module102 | AT1G15520 | ABCG40 | ATP-binding cassette G40 | pleiotropic drug resistance 12 | ||
GRMZM2G148087 | wrky43 | Module102 | AT2G38470 | WRKY33 | WRKY DNA-binding protein 33 | WRKY DNA-binding protein 33 | WRKY |
GRMZM2G153683 | Module102 | AT5G61210 | SNAP33 | soluble N-ethylmaleimide-sensitive factor adaptor protein 33 | soluble N-ethylmaleimide-sensitive factor adaptor protein 33 | ||
GRMZM2G169020 | Module102 | AT1G16670 | AT1G16670 | Protein kinase superfamily protein | |||
GRMZM2G324999 | wrky25 | Module102 | AT4G11070 | WRKY41 | WRKY family transcription factor | WRKY | |
GRMZM2G334165 | Module102 | AT1G70740 | AT1G70740 | Protein kinase superfamily protein | |||
GRMZM2G335685 | Module102 | AT4G17670 | AT4G17670 | Protein of unknown function (DUF581) | |||
GRMZM2G349749 | Module102 | AT2G26560 | PLA2A | phospholipase A 2A | phospholipase A 2A | ||
GRMZM2G392320 | Module102 | AT5G24870 | AT5G24870 | RING/U-box superfamily protein | |||
GRMZM2G109843 | Module102 | AT3G50530 | CRK | CDPK-related kinase | CDPK-related kinase | ||
GRMZM2G447480 | Module102 | AT5G15710 | AT5G15710 | Galactose oxidase/kelch repeat superfamily protein | |||
GRMZM2G462118 | Module102 | AT4G19600 | CYCT1;4 | Cyclin family protein | |||
GRMZM2G471367 | Module102 | AT2G26190 | AT2G26190 | calmodulin-binding family protein | |||
GRMZM5G803404 | Module102 | AT5G60740 | ABCG28 | ATP-binding cassette G28 | ABC transporter family protein | ||
GRMZM5G821439 | gras49 | Module102 | AT5G48150 | PAT1 | phytochrome a signal transduction 1 | GRAS family transcription factor | GRAS |
GRMZM5G871347 | wrky93 | Module102 | AT1G62300 | WRKY6 | WRKY family transcription factor | WRKY |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module102 | 31 | 1 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.000238021 | 5 | 460 |
Module102 | 31 | 2 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.00143889 | 5 | 683 |
Module102 | 31 | 3 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.001448285 | 5 | 684 |
Module102 | 31 | 4 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.001801759 | 6 | 1293 |
Module102 | 31 | 5 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.001801759 | 6 | 1293 |
Module102 | 31 | 6 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.001801759 | 6 | 1293 |
Module102 | 31 | 7 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.001883142 | 6 | 1304 |
Module102 | 31 | 8 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.002111413 | 6 | 1333 |
Module102 | 31 | 9 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.002470041 | 6 | 1374 |
Module102 | 31 | 10 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.002470041 | 6 | 1374 |
Module102 | 31 | 11 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.002791421 | 6 | 1407 |
Module102 | 31 | 12 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.002811884 | 6 | 1409 |
Module102 | 31 | 13 | GO:0010468 | biological_process | regulation of gene expression | 0.002863547 | 6 | 1414 |
Module102 | 31 | 14 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.002863547 | 6 | 1414 |
Module102 | 31 | 15 | GO:0006351 | biological_process | transcription, DNA-templated | 0.002863547 | 6 | 1414 |
Module102 | 31 | 16 | GO:0032774 | biological_process | RNA biosynthetic process | 0.002915937 | 6 | 1419 |
Module102 | 31 | 17 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.002947723 | 6 | 1422 |
Module102 | 31 | 18 | GO:0016045 | biological_process | detection of bacterium | 0.003335802 | 1 | 3 |
Module102 | 31 | 19 | GO:0098543 | biological_process | detection of other organism | 0.003335802 | 1 | 3 |
Module102 | 31 | 20 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.004238436 | 6 | 1527 |
Module102 | 31 | 21 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.004309131 | 6 | 1532 |
Module102 | 31 | 22 | GO:0009595 | biological_process | detection of biotic stimulus | 0.004445425 | 1 | 4 |
Module102 | 31 | 23 | GO:0098581 | biological_process | detection of external biotic stimulus | 0.004445425 | 1 | 4 |
Module102 | 31 | 24 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.004457409 | 11 | 4961 |
Module102 | 31 | 25 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.004630914 | 6 | 1554 |
Module102 | 31 | 26 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.005345705 | 6 | 1599 |
Module102 | 31 | 27 | GO:0010942 | biological_process | positive regulation of cell death | 0.005553896 | 1 | 5 |
Module102 | 31 | 28 | GO:0008219 | biological_process | cell death | 0.006698011 | 2 | 112 |
Module102 | 31 | 29 | GO:0016265 | biological_process | death | 0.006698011 | 2 | 112 |
Module102 | 31 | 30 | GO:0071456 | biological_process | cellular response to hypoxia | 0.007767383 | 1 | 7 |
Module102 | 31 | 31 | GO:0019222 | biological_process | regulation of metabolic process | 0.008626135 | 6 | 1761 |
Module102 | 31 | 32 | GO:0071453 | biological_process | cellular response to oxygen levels | 0.008872401 | 1 | 8 |
Module102 | 31 | 33 | GO:0036294 | biological_process | cellular response to decreased oxygen levels | 0.008872401 | 1 | 8 |
Module102 | 31 | 34 | GO:0050794 | biological_process | regulation of cellular process | 0.009130498 | 7 | 2381 |
Module102 | 31 | 35 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.009705512 | 6 | 1804 |
Module102 | 31 | 36 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.010050727 | 6 | 1817 |
Module102 | 31 | 37 | GO:0043170 | biological_process | macromolecule metabolic process | 0.010787057 | 11 | 5482 |
Module102 | 31 | 38 | GO:0016070 | biological_process | RNA metabolic process | 0.01108308 | 6 | 1854 |
Module102 | 31 | 39 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.013247333 | 6 | 1924 |
Module102 | 31 | 40 | GO:0010227 | biological_process | floral organ abscission | 0.014380284 | 1 | 13 |
Module102 | 31 | 41 | GO:0009838 | biological_process | abscission | 0.015478427 | 1 | 14 |
Module102 | 31 | 42 | GO:0031408 | biological_process | oxylipin biosynthetic process | 0.016575427 | 1 | 15 |
Module102 | 31 | 43 | GO:0009504 | cellular_component | cell plate | 0.017500503 | 1 | 31 |
Module102 | 31 | 44 | GO:0000145 | cellular_component | exocyst | 0.019180468 | 1 | 34 |
Module102 | 31 | 45 | GO:0050789 | biological_process | regulation of biological process | 0.02008465 | 7 | 2751 |
Module102 | 31 | 46 | GO:0004674 | molecular_function | protein serine/threonine kinase activity | 0.02182322 | 4 | 858 |
Module102 | 31 | 47 | GO:0006952 | biological_process | defense response | 0.021941727 | 3 | 556 |
Module102 | 31 | 48 | GO:0031407 | biological_process | oxylipin metabolic process | 0.022043339 | 1 | 20 |
Module102 | 31 | 49 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.024081964 | 6 | 2185 |
Module102 | 31 | 50 | GO:0009612 | biological_process | response to mechanical stimulus | 0.025310452 | 1 | 23 |
Module102 | 31 | 51 | GO:0051607 | biological_process | defense response to virus | 0.026397224 | 1 | 24 |
Module102 | 31 | 52 | GO:0009626 | biological_process | plant-type hypersensitive response | 0.026397224 | 1 | 24 |
Module102 | 31 | 53 | GO:0043207 | biological_process | response to external biotic stimulus | 0.026433705 | 3 | 597 |
Module102 | 31 | 54 | GO:0051707 | biological_process | response to other organism | 0.026433705 | 3 | 597 |
Module102 | 31 | 55 | GO:0044237 | biological_process | cellular metabolic process | 0.026907646 | 12 | 7053 |
Module102 | 31 | 56 | GO:0001666 | biological_process | response to hypoxia | 0.027482865 | 1 | 25 |
Module102 | 31 | 57 | GO:0000911 | biological_process | cytokinesis by cell plate formation | 0.027482865 | 1 | 25 |
Module102 | 31 | 58 | GO:0065007 | biological_process | biological regulation | 0.027783379 | 7 | 2926 |
Module102 | 31 | 59 | GO:0009607 | biological_process | response to biotic stimulus | 0.029159059 | 3 | 620 |
Module102 | 31 | 60 | GO:0044448 | cellular_component | cell cortex part | 0.029210067 | 1 | 52 |
Module102 | 31 | 61 | GO:0034050 | biological_process | host programmed cell death induced by symbiont | 0.029650758 | 1 | 27 |
Module102 | 31 | 62 | GO:0099568 | cellular_component | cytoplasmic region | 0.030319171 | 1 | 54 |
Module102 | 31 | 63 | GO:0005938 | cellular_component | cell cortex | 0.030319171 | 1 | 54 |
Module102 | 31 | 64 | GO:0036293 | biological_process | response to decreased oxygen levels | 0.030733012 | 1 | 28 |
Module102 | 31 | 65 | GO:0009987 | biological_process | cellular process | 0.031727657 | 14 | 9353 |
Module102 | 31 | 66 | GO:0070482 | biological_process | response to oxygen levels | 0.03181414 | 1 | 29 |
Module102 | 31 | 67 | GO:1902410 | biological_process | mitotic cytokinetic process | 0.032894142 | 1 | 30 |
Module102 | 31 | 68 | GO:0031349 | biological_process | positive regulation of defense response | 0.032894142 | 1 | 30 |
Module102 | 31 | 69 | GO:0032506 | biological_process | cytokinetic process | 0.032894142 | 1 | 30 |
Module102 | 31 | 70 | GO:0036211 | biological_process | protein modification process | 0.035754036 | 5 | 1748 |
Module102 | 31 | 71 | GO:0006464 | biological_process | cellular protein modification process | 0.035754036 | 5 | 1748 |
Module102 | 31 | 72 | GO:0010941 | biological_process | regulation of cell death | 0.037202916 | 1 | 34 |
Module102 | 31 | 73 | GO:0006468 | biological_process | protein phosphorylation | 0.037503484 | 4 | 1190 |
Module102 | 31 | 74 | GO:0002252 | biological_process | immune effector process | 0.039350578 | 1 | 36 |
Module102 | 31 | 75 | GO:0044238 | biological_process | primary metabolic process | 0.039987038 | 12 | 7365 |
Module102 | 31 | 76 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.044641967 | 6 | 2507 |
Module102 | 31 | 77 | GO:0009910 | biological_process | negative regulation of flower development | 0.044700187 | 1 | 41 |
Module102 | 31 | 78 | GO:0043412 | biological_process | macromolecule modification | 0.044723106 | 5 | 1854 |
Module102 | 31 | 79 | GO:0010467 | biological_process | gene expression | 0.045032156 | 6 | 2512 |
Module102 | 31 | 80 | GO:0000281 | biological_process | mitotic cytokinesis | 0.045766766 | 1 | 42 |
Module102 | 31 | 81 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.046136893 | 6 | 2526 |
Module102 | 31 | 82 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.046296185 | 6 | 2528 |
Module102 | 31 | 83 | GO:0051606 | biological_process | detection of stimulus | 0.047896592 | 1 | 44 |
Module102 | 31 | 84 | GO:0061640 | biological_process | cytoskeleton-dependent cytokinesis | 0.047896592 | 1 | 44 |
Module102 | 31 | 85 | GO:2000242 | biological_process | negative regulation of reproductive process | 0.04895984 | 1 | 45 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
wrky97 | GRMZM2G120001 | 0.0403 |
wrky97 | wrky43 | 0.0471 |
wrky97 | wrky25 | 0.0873 |
wrky97 | GRMZM2G471367 | 0.0374 |
GRMZM2G026889 | GRMZM2G032602 | 0.037 |
GRMZM2G026889 | GRMZM2G054900 | 0.0364 |
GRMZM2G026889 | GRMZM2G074735 | 0.0373 |
GRMZM2G026889 | GRMZM2G120001 | 0.0445 |
GRMZM2G026889 | GRMZM2G138370 | 0.0361 |
GRMZM2G026889 | GRMZM2G143139 | 0.0395 |
GRMZM2G026889 | wrky43 | 0.0352 |
GRMZM2G026889 | GRMZM2G153683 | 0.0399 |
GRMZM2G026889 | GRMZM2G169020 | 0.0512 |
GRMZM2G026889 | GRMZM2G349749 | 0.0449 |
GRMZM2G026889 | GRMZM2G462118 | 0.0353 |
hagtf7 | wrky115 | 0.0667 |
hagtf7 | wrky43 | 0.0381 |
hagtf7 | wrky25 | 0.0372 |
GRMZM2G032602 | GRMZM2G054900 | 0.0431 |
GRMZM2G032602 | GRMZM2G120001 | 0.0726 |
GRMZM2G032602 | GRMZM2G153683 | 0.0372 |
GRMZM2G032602 | GRMZM2G169020 | 0.0575 |
GRMZM2G032602 | GRMZM2G462118 | 0.0502 |
GRMZM2G032602 | GRMZM2G471367 | 0.0596 |
wrky115 | GRMZM2G054900 | 0.041 |
wrky115 | GRMZM2G055052 | 0.0872 |
wrky115 | GRMZM2G120001 | 0.1144 |
wrky115 | GRMZM2G138370 | 0.0744 |
wrky115 | wrky43 | 0.0992 |
wrky115 | GRMZM2G169020 | 0.0479 |
wrky115 | wrky25 | 0.0752 |
wrky115 | GRMZM2G447480 | 0.0537 |
GRMZM2G054900 | GRMZM2G074735 | 0.0517 |
GRMZM2G054900 | GRMZM2G120001 | 0.0352 |
GRMZM2G054900 | GRMZM2G349749 | 0.0397 |
GRMZM2G054900 | GRMZM2G471367 | 0.1474 |
GRMZM2G054900 | wrky93 | 0.0444 |
GRMZM2G055052 | GRMZM2G120001 | 0.0791 |
GRMZM2G055052 | GRMZM2G169020 | 0.0479 |
GRMZM2G055052 | GRMZM2G334165 | 0.0367 |
GRMZM2G027958 | GRMZM2G138370 | 0.0498 |
GRMZM2G027958 | wrky25 | 0.0488 |
GRMZM2G074735 | GRMZM2G120001 | 0.0382 |
GRMZM2G074735 | GRMZM2G169020 | 0.0605 |
GRMZM2G074735 | GRMZM2G335685 | 0.0354 |
GRMZM2G074735 | GRMZM5G803404 | 0.036 |
GRMZM2G079323 | GRMZM2G153683 | 0.0411 |
GRMZM2G079323 | gras49 | 0.0367 |
GRMZM2G111657 | GRMZM2G169020 | 0.0361 |
GRMZM2G120001 | GRMZM2G138370 | 0.0423 |
GRMZM2G120001 | wrky43 | 0.0625 |
GRMZM2G120001 | wrky25 | 0.0406 |
GRMZM2G120001 | GRMZM2G349749 | 0.046 |
GRMZM2G120001 | GRMZM2G471367 | 0.0718 |
GRMZM2G138259 | wrky93 | 0.041 |
GRMZM2G138370 | wrky43 | 0.1027 |
GRMZM2G138370 | wrky25 | 0.0684 |
GRMZM2G138370 | GRMZM2G349749 | 0.0416 |
GRMZM2G138370 | GRMZM2G447480 | 0.0503 |
GRMZM2G143139 | wrky43 | 0.0428 |
wrky43 | GRMZM2G169020 | 0.0427 |
wrky43 | wrky25 | 0.0729 |
wrky43 | GRMZM2G349749 | 0.0386 |
wrky43 | GRMZM2G462118 | 0.0431 |
wrky43 | GRMZM2G471367 | 0.0353 |
wrky43 | GRMZM5G803404 | 0.0394 |
GRMZM2G153683 | GRMZM2G169020 | 0.0523 |
GRMZM2G153683 | GRMZM2G334165 | 0.054 |
GRMZM2G153683 | GRMZM2G462118 | 0.0387 |
GRMZM2G169020 | GRMZM2G334165 | 0.0717 |
GRMZM2G169020 | GRMZM2G392320 | 0.0411 |
GRMZM2G169020 | GRMZM2G462118 | 0.0836 |
GRMZM2G169020 | gras49 | 0.0409 |
wrky25 | GRMZM2G447480 | 0.0434 |
wrky25 | GRMZM2G471367 | 0.0423 |
GRMZM2G334165 | GRMZM2G462118 | 0.0355 |
GRMZM2G392320 | GRMZM2G109843 | 0.0438 |