This page contains information for Module104, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G005046 | Module104 | AT5G17540 | AT5G17540 | HXXXD-type acyl-transferase family protein | |||
GRMZM2G008196 | Module104 | AT5G64260 | EXL2 | EXORDIUM like 2 | EXORDIUM like 2 | ||
GRMZM2G010912 | Module104 | AT5G10890 | AT5G10890 | myosin heavy chain-related | |||
GRMZM2G040115 | Module104 | AT3G19850 | AT3G19850 | Phototropic-responsive NPH3 family protein | |||
GRMZM2G051942 | Module104 | ||||||
GRMZM2G061655 | Module104 | AT5G67390 | AT5G67390 | ||||
GRMZM2G040359 | Module104 | AT5G41890 | AT5G41890 | GDSL-like Lipase/Acylhydrolase superfamily protein | |||
GRMZM2G044736 | Module104 | AT2G45260 | AT2G45260 | Plant protein of unknown function (DUF641) | |||
GRMZM2G066044 | Module104 | AT5G62170 | TRM25 | TON1 Recruiting Motif 25 | |||
GRMZM2G069251 | Module104 | ||||||
GRMZM2G097456 | gras11 | Module104 | AT3G49950 | AT3G49950 | GRAS family transcription factor | GRAS | |
GRMZM2G107686 | Module104 | AT1G04110 | SDD1 | STOMATAL DENSITY AND DISTRIBUTION 1 | Subtilase family protein | ||
GRMZM2G115133 | Module104 | ||||||
GRMZM2G116491 | Module104 | AT4G31805 | AT4G31805 | WRKY family transcription factor | |||
GRMZM2G125501 | gras73 | Module104 | AT3G49950 | AT3G49950 | GRAS family transcription factor | GRAS | |
GRMZM2G146335 | Module104 | ||||||
GRMZM2G150011 | Module104 | AT1G13290 | DOT5 | DEFECTIVELY ORGANIZED TRIBUTARIES 5 | C2H2-like zinc finger protein | C2H2 | |
GRMZM2G151542 | ereb80 | Module104 | AT4G23750 | CRF2 | cytokinin response factor 2 | cytokinin response factor 2 | AP2-EREBP |
GRMZM2G152011 | Module104 | AT3G15550 | AT3G15550 | ||||
GRMZM2G161435 | hbtf2 | Module104 | AT4G32980 | ATH1 | homeobox gene 1 | homeobox gene 1 | HB |
GRMZM2G176081 | Module104 | ||||||
GRMZM2G177393 | Module104 | AT1G34245 | EPF2 | EPIDERMAL PATTERNING FACTOR 2 | Putative membrane lipoprotein | ||
GRMZM2G058690 | Module104 | AT3G16490 | IQD26 | IQ-domain 26 | IQ-domain 26 | ||
GRMZM2G177929 | Module104 | AT4G29150 | IQD25 | IQ-domain 25 | IQ-domain 25 | ||
GRMZM2G302664 | Module104 | AT1G15760 | AT1G15760 | Sterile alpha motif (SAM) domain-containing protein | |||
GRMZM2G337387 | Module104 | AT3G02645 | AT3G02645 | Plant protein of unknown function (DUF247) | |||
GRMZM2G417164 | bhlh82 | Module104 | AT3G06120 | MUTE | MUTE | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
GRMZM2G419901 | ereb38 | Module104 | AT3G57600 | AT3G57600 | Integrase-type DNA-binding superfamily protein | AP2-EREBP | |
GRMZM5G807619 | Module104 | ||||||
GRMZM5G822440 | Module104 | AT1G61350 | AT1G61350 | ARM repeat superfamily protein | |||
zma-MIR396f | Module104 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module104 | 31 | 1 | GO:0010374 | biological_process | stomatal complex development | 0.000170812 | 2 | 30 |
Module104 | 31 | 2 | GO:0009888 | biological_process | tissue development | 0.001214683 | 3 | 342 |
Module104 | 31 | 3 | GO:0010327 | molecular_function | acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity | 0.001462567 | 1 | 2 |
Module104 | 31 | 4 | GO:0009886 | biological_process | post-embryonic morphogenesis | 0.001714215 | 2 | 95 |
Module104 | 31 | 5 | GO:0010016 | biological_process | shoot system morphogenesis | 0.002456604 | 2 | 114 |
Module104 | 31 | 6 | GO:0009897 | cellular_component | external side of plasma membrane | 0.0028401 | 1 | 5 |
Module104 | 31 | 7 | GO:0019222 | biological_process | regulation of metabolic process | 0.003023811 | 5 | 1761 |
Module104 | 31 | 8 | GO:0016413 | molecular_function | O-acetyltransferase activity | 0.004381821 | 1 | 6 |
Module104 | 31 | 9 | GO:0090558 | biological_process | plant epidermis development | 0.00465885 | 2 | 158 |
Module104 | 31 | 10 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.007161778 | 4 | 1293 |
Module104 | 31 | 11 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.007161778 | 4 | 1293 |
Module104 | 31 | 12 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.007161778 | 4 | 1293 |
Module104 | 31 | 13 | GO:0010588 | biological_process | cotyledon vascular tissue pattern formation | 0.00732462 | 1 | 11 |
Module104 | 31 | 14 | GO:0009986 | cellular_component | cell surface | 0.007370279 | 1 | 13 |
Module104 | 31 | 15 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.00738314 | 4 | 1304 |
Module104 | 31 | 16 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.007989176 | 4 | 1333 |
Module104 | 31 | 17 | GO:0048826 | biological_process | cotyledon morphogenesis | 0.008651233 | 1 | 13 |
Module104 | 31 | 18 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.008902904 | 4 | 1374 |
Module104 | 31 | 19 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.008902904 | 4 | 1374 |
Module104 | 31 | 20 | GO:0010103 | biological_process | stomatal complex morphogenesis | 0.009313949 | 1 | 14 |
Module104 | 31 | 21 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.009688257 | 4 | 1407 |
Module104 | 31 | 22 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.009737316 | 4 | 1409 |
Module104 | 31 | 23 | GO:0010468 | biological_process | regulation of gene expression | 0.009860702 | 4 | 1414 |
Module104 | 31 | 24 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.009860702 | 4 | 1414 |
Module104 | 31 | 25 | GO:0006351 | biological_process | transcription, DNA-templated | 0.009860702 | 4 | 1414 |
Module104 | 31 | 26 | GO:0032774 | biological_process | RNA biosynthetic process | 0.009985147 | 4 | 1419 |
Module104 | 31 | 27 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.010060324 | 4 | 1422 |
Module104 | 31 | 28 | GO:0098552 | cellular_component | side of membrane | 0.01019292 | 1 | 18 |
Module104 | 31 | 29 | GO:0010305 | biological_process | leaf vascular tissue pattern formation | 0.011299733 | 1 | 17 |
Module104 | 31 | 30 | GO:0050794 | biological_process | regulation of cellular process | 0.011505919 | 5 | 2381 |
Module104 | 31 | 31 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.0119289 | 3 | 683 |
Module104 | 31 | 32 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.011976453 | 3 | 684 |
Module104 | 31 | 33 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.012939745 | 4 | 1527 |
Module104 | 31 | 34 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.013089242 | 4 | 1532 |
Module104 | 31 | 35 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.013760821 | 4 | 1554 |
Module104 | 31 | 36 | GO:0009791 | biological_process | post-embryonic development | 0.01392009 | 3 | 812 |
Module104 | 31 | 37 | GO:0048598 | biological_process | embryonic morphogenesis | 0.013941942 | 1 | 21 |
Module104 | 31 | 38 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.015205657 | 4 | 1599 |
Module104 | 31 | 39 | GO:0042127 | biological_process | regulation of cell proliferation | 0.019207537 | 1 | 29 |
Module104 | 31 | 40 | GO:0048825 | biological_process | cotyledon development | 0.019863975 | 1 | 30 |
Module104 | 31 | 41 | GO:0050789 | biological_process | regulation of biological process | 0.021306162 | 5 | 2751 |
Module104 | 31 | 42 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.023066003 | 4 | 1804 |
Module104 | 31 | 43 | GO:0010087 | biological_process | phloem or xylem histogenesis | 0.023140315 | 1 | 35 |
Module104 | 31 | 44 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.023638606 | 4 | 1817 |
Module104 | 31 | 45 | GO:0016070 | biological_process | RNA metabolic process | 0.025318749 | 4 | 1854 |
Module104 | 31 | 46 | GO:0065007 | biological_process | biological regulation | 0.027557168 | 5 | 2926 |
Module104 | 31 | 47 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.02870507 | 4 | 1924 |
Module104 | 31 | 48 | GO:0008374 | molecular_function | O-acyltransferase activity | 0.031016429 | 1 | 43 |
Module104 | 31 | 49 | GO:0010051 | biological_process | xylem and phloem pattern formation | 0.031613284 | 1 | 48 |
Module104 | 31 | 50 | GO:0008283 | biological_process | cell proliferation | 0.038731628 | 1 | 59 |
Module104 | 31 | 51 | GO:0048367 | biological_process | shoot system development | 0.040096375 | 2 | 490 |
Module104 | 31 | 52 | GO:0090626 | biological_process | plant epidermis morphogenesis | 0.040664905 | 1 | 62 |
Module104 | 31 | 53 | GO:0003677 | molecular_function | DNA binding | 0.040758281 | 4 | 1891 |
Module104 | 31 | 54 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.043835653 | 4 | 2185 |
Module104 | 31 | 55 | GO:0016407 | molecular_function | acetyltransferase activity | 0.045140017 | 1 | 63 |
Module104 | 31 | 56 | GO:0009653 | biological_process | anatomical structure morphogenesis | 0.047064135 | 2 | 535 |
Module104 | 31 | 57 | GO:0009965 | biological_process | leaf morphogenesis | 0.047724051 | 1 | 73 |
Module104 | 31 | 58 | GO:0005515 | molecular_function | protein binding | 0.048135189 | 6 | 3991 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G005046 | GRMZM2G008196 | 0.0564 |
GRMZM2G005046 | GRMZM2G069251 | 0.0383 |
GRMZM2G005046 | GRMZM2G107686 | 0.0803 |
GRMZM2G005046 | bhlh82 | 0.0941 |
GRMZM2G005046 | ereb38 | 0.0593 |
GRMZM2G008196 | GRMZM2G010912 | 0.098 |
GRMZM2G008196 | GRMZM2G069251 | 0.0476 |
GRMZM2G008196 | gras11 | 0.0655 |
GRMZM2G008196 | GRMZM2G107686 | 0.1449 |
GRMZM2G008196 | GRMZM2G116491 | 0.059 |
GRMZM2G008196 | GRMZM2G176081 | 0.0389 |
GRMZM2G008196 | GRMZM2G177393 | 0.0847 |
GRMZM2G008196 | GRMZM2G302664 | 0.0603 |
GRMZM2G008196 | GRMZM2G337387 | 0.0418 |
GRMZM2G008196 | bhlh82 | 0.1186 |
GRMZM2G008196 | ereb38 | 0.0787 |
GRMZM2G010912 | GRMZM2G040115 | 0.0423 |
GRMZM2G010912 | GRMZM2G069251 | 0.0389 |
GRMZM2G010912 | gras11 | 0.0442 |
GRMZM2G010912 | GRMZM2G107686 | 0.1467 |
GRMZM2G010912 | GRMZM2G115133 | 0.0881 |
GRMZM2G010912 | GRMZM2G116491 | 0.0774 |
GRMZM2G010912 | gras73 | 0.0489 |
GRMZM2G010912 | GRMZM2G146335 | 0.0612 |
GRMZM2G010912 | ereb80 | 0.0504 |
GRMZM2G010912 | GRMZM2G176081 | 0.0374 |
GRMZM2G010912 | GRMZM2G177393 | 0.1118 |
GRMZM2G010912 | GRMZM2G302664 | 0.0457 |
GRMZM2G010912 | bhlh82 | 0.1541 |
GRMZM2G010912 | ereb38 | 0.0776 |
GRMZM2G051942 | GRMZM2G177393 | 0.0371 |
GRMZM2G051942 | bhlh82 | 0.0594 |
GRMZM2G061655 | GRMZM2G040359 | 0.0375 |
GRMZM2G061655 | GRMZM2G044736 | 0.0565 |
GRMZM2G061655 | GRMZM2G115133 | 0.0569 |
GRMZM2G061655 | GRMZM2G150011 | 0.0522 |
GRMZM2G040359 | GRMZM2G150011 | 0.0376 |
GRMZM2G044736 | GRMZM2G115133 | 0.0386 |
GRMZM2G044736 | GRMZM2G177393 | 0.0384 |
GRMZM2G066044 | GRMZM2G107686 | 0.0437 |
GRMZM2G066044 | GRMZM2G115133 | 0.0453 |
GRMZM2G066044 | GRMZM2G146335 | 0.0544 |
GRMZM2G069251 | GRMZM2G107686 | 0.0641 |
GRMZM2G069251 | bhlh82 | 0.0583 |
GRMZM2G069251 | ereb38 | 0.0596 |
gras11 | GRMZM2G107686 | 0.0523 |
gras11 | GRMZM2G115133 | 0.0534 |
gras11 | GRMZM2G116491 | 0.0644 |
gras11 | gras73 | 0.0565 |
gras11 | GRMZM2G177393 | 0.0764 |
gras11 | GRMZM2G177929 | 0.0378 |
gras11 | bhlh82 | 0.0916 |
GRMZM2G107686 | GRMZM2G115133 | 0.078 |
GRMZM2G107686 | GRMZM2G116491 | 0.0453 |
GRMZM2G107686 | GRMZM2G152011 | 0.0353 |
GRMZM2G107686 | GRMZM2G176081 | 0.0808 |
GRMZM2G107686 | GRMZM2G177393 | 0.1129 |
GRMZM2G107686 | GRMZM2G177929 | 0.04 |
GRMZM2G107686 | GRMZM2G337387 | 0.0663 |
GRMZM2G107686 | bhlh82 | 0.176 |
GRMZM2G107686 | ereb38 | 0.1035 |
GRMZM2G107686 | zma-MIR396f | 0.0391 |
GRMZM2G115133 | GRMZM2G116491 | 0.0553 |
GRMZM2G115133 | GRMZM2G150011 | 0.0456 |
GRMZM2G115133 | hbtf2 | 0.0573 |
GRMZM2G115133 | GRMZM2G176081 | 0.038 |
GRMZM2G115133 | GRMZM2G177393 | 0.1227 |
GRMZM2G115133 | bhlh82 | 0.0647 |
GRMZM2G115133 | ereb38 | 0.0421 |
GRMZM2G116491 | GRMZM2G146335 | 0.0627 |
GRMZM2G116491 | GRMZM2G176081 | 0.0375 |
GRMZM2G116491 | GRMZM2G177393 | 0.0701 |
GRMZM2G116491 | bhlh82 | 0.0558 |
GRMZM2G116491 | ereb38 | 0.0373 |
gras73 | GRMZM2G177929 | 0.0419 |
GRMZM2G146335 | GRMZM2G177393 | 0.0568 |
GRMZM2G146335 | GRMZM5G807619 | 0.1055 |
ereb80 | bhlh82 | 0.0416 |
GRMZM2G176081 | GRMZM2G177393 | 0.072 |
GRMZM2G176081 | bhlh82 | 0.0941 |
GRMZM2G177393 | GRMZM2G058690 | 0.0366 |
GRMZM2G177393 | bhlh82 | 0.1531 |
GRMZM2G177393 | ereb38 | 0.0652 |
GRMZM2G058690 | GRMZM2G177929 | 0.0417 |
GRMZM2G337387 | bhlh82 | 0.071 |
GRMZM2G337387 | GRMZM5G822440 | 0.037 |
bhlh82 | ereb38 | 0.0992 |