This page contains information for Module106, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G012052 | Module106 | AT5G59300 | UBC7 | ubiquitin carrier protein 7 | ubiquitin carrier protein 7 | ||
GRMZM2G007276 | Module106 | AT5G59300 | UBC7 | ubiquitin carrier protein 7 | ubiquitin carrier protein 7 | ||
AC209835.4_FG004 | Module106 | AT4G31290 | AT4G31290 | ChaC-like family protein | |||
GRMZM2G038284 | Module106 | AT3G05700 | AT3G05700 | Drought-responsive family protein | |||
GRMZM2G064136 | Module106 | AT4G31290 | AT4G31290 | ChaC-like family protein | |||
GRMZM2G064807 | Module106 | AT4G11630 | AT4G11630 | Ribosomal protein L19 family protein | |||
GRMZM2G059302 | hagtf20 | Module106 | AT2G38130 | ATMAK3 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | GNAT | |
GRMZM2G075624 | tct1 | Module106 | AT3G16640 | TCTP | translationally controlled tumor protein | translationally controlled tumor protein | |
GRMZM2G076827 | Module106 | AT4G01000 | AT4G01000 | Ubiquitin-like superfamily protein | |||
GRMZM2G089631 | Module106 | AT4G31290 | AT4G31290 | ChaC-like family protein | |||
GRMZM2G108474 | Module106 | AT3G16640 | TCTP | translationally controlled tumor protein | translationally controlled tumor protein | ||
GRMZM2G031586 | Module106 | ||||||
GRMZM2G120918 | Module106 | AT5G26220 | AT5G26220 | ChaC-like family protein | |||
GRMZM2G126338 | Module106 | AT3G13460 | ECT2 | evolutionarily conserved C-terminal region 2 | evolutionarily conserved C-terminal region 2 | ||
GRMZM2G076062 | umc2224 | Module106 | AT3G13460 | ECT2 | evolutionarily conserved C-terminal region 2 | evolutionarily conserved C-terminal region 2 | |
GRMZM2G134980 | Module106 | AT3G44110 | J3 | DNAJ homologue 3 | |||
GRMZM2G150160 | Module106 | AT4G01000 | AT4G01000 | Ubiquitin-like superfamily protein | |||
GRMZM2G152599 | Module106 | AT5G56940 | AT5G56940 | Ribosomal protein S16 family protein | |||
GRMZM2G171518 | Module106 | AT2G43970 | LARP6b | La related protein 6b | RNA-binding protein | ||
GRMZM2G056270 | Module106 | AT5G18650 | AT5G18650 | CHY-type/CTCHY-type/RING-type Zinc finger protein | |||
GRMZM2G330019 | Module106 | AT3G13460 | ECT2 | evolutionarily conserved C-terminal region 2 | evolutionarily conserved C-terminal region 2 | ||
GRMZM2G364069 | cdj2 | Module106 | AT3G44110 | J3 | DNAJ homologue 3 | ||
GRMZM2G385945 | Module106 | AT3G02790 | AT3G02790 | zinc finger (C2H2 type) family protein | |||
GRMZM2G134759 | Module106 | AT3G02790 | AT3G02790 | zinc finger (C2H2 type) family protein | |||
GRMZM5G831993 | Module106 | AT2G29580 | MAC5B | MOS4-associated complex subunit 5B | CCCH-type zinc fingerfamily protein with RNA-binding domain | C3H | |
GRMZM2G103490 | Module106 | AT2G25430 | AT2G25430 | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | |||
GRMZM5G835323 | tif1 | Module106 | AT1G54290 | AT1G54290 | Translation initiation factor SUI1 family protein | ||
GRMZM5G836222 | znf1 | Module106 | AT1G51200 | AT1G51200 | A20/AN1-like zinc finger family protein | ||
GRMZM2G114758 | Module106 | AT5G10070 | AT5G10070 | RNase L inhibitor protein-related | |||
GRMZM2G165939 | Module106 | AT1G72660 | AT1G72660 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | |||
GRMZM6G902674 | Module106 | AT1G16170 | AT1G16170 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module106 | 31 | 1 | GO:0031072 | molecular_function | heat shock protein binding | 0.000954022 | 2 | 42 |
Module106 | 31 | 2 | GO:0007019 | biological_process | microtubule depolymerization | 0.001631926 | 1 | 2 |
Module106 | 31 | 3 | GO:0009819 | biological_process | drought recovery | 0.001631926 | 1 | 2 |
Module106 | 31 | 4 | GO:0031114 | biological_process | regulation of microtubule depolymerization | 0.001631926 | 1 | 2 |
Module106 | 31 | 5 | GO:0019003 | molecular_function | GDP binding | 0.002193449 | 1 | 2 |
Module106 | 31 | 6 | GO:0031112 | biological_process | positive regulation of microtubule polymerization or depolymerization | 0.002446981 | 1 | 3 |
Module106 | 31 | 7 | GO:0010288 | biological_process | response to lead ion | 0.003261431 | 1 | 4 |
Module106 | 31 | 8 | GO:0043243 | biological_process | positive regulation of protein complex disassembly | 0.004075276 | 1 | 5 |
Module106 | 31 | 9 | GO:0008270 | molecular_function | zinc ion binding | 0.00420506 | 6 | 1508 |
Module106 | 31 | 10 | GO:0090333 | biological_process | regulation of stomatal closure | 0.004888517 | 1 | 6 |
Module106 | 31 | 11 | GO:0031110 | biological_process | regulation of microtubule polymerization or depolymerization | 0.004888517 | 1 | 6 |
Module106 | 31 | 12 | GO:0016881 | molecular_function | acid-amino acid ligase activity | 0.00570065 | 2 | 104 |
Module106 | 31 | 13 | GO:0070507 | biological_process | regulation of microtubule cytoskeleton organization | 0.005701155 | 1 | 7 |
Module106 | 31 | 14 | GO:0032886 | biological_process | regulation of microtubule-based process | 0.005701155 | 1 | 7 |
Module106 | 31 | 15 | GO:0005543 | molecular_function | phospholipid binding | 0.005915427 | 2 | 106 |
Module106 | 31 | 16 | GO:1901879 | biological_process | regulation of protein depolymerization | 0.006513189 | 1 | 8 |
Module106 | 31 | 17 | GO:0009408 | biological_process | response to heat | 0.006923351 | 2 | 157 |
Module106 | 31 | 18 | GO:0051082 | molecular_function | unfolded protein binding | 0.007764873 | 2 | 122 |
Module106 | 31 | 19 | GO:0010252 | biological_process | auxin homeostasis | 0.008135449 | 1 | 10 |
Module106 | 31 | 20 | GO:0070300 | molecular_function | phosphatidic acid binding | 0.008746566 | 1 | 8 |
Module106 | 31 | 21 | GO:0031109 | biological_process | microtubule polymerization or depolymerization | 0.0097553 | 1 | 12 |
Module106 | 31 | 22 | GO:0043244 | biological_process | regulation of protein complex disassembly | 0.010564323 | 1 | 13 |
Module106 | 31 | 23 | GO:0048768 | biological_process | root hair cell tip growth | 0.010564323 | 1 | 13 |
Module106 | 31 | 24 | GO:0090332 | biological_process | stomatal closure | 0.011372746 | 1 | 14 |
Module106 | 31 | 25 | GO:0008289 | molecular_function | lipid binding | 0.011692436 | 2 | 151 |
Module106 | 31 | 26 | GO:0006457 | biological_process | protein folding | 0.012562099 | 2 | 214 |
Module106 | 31 | 27 | GO:0051495 | biological_process | positive regulation of cytoskeleton organization | 0.01298779 | 1 | 16 |
Module106 | 31 | 28 | GO:0048268 | biological_process | clathrin coat assembly | 0.01298779 | 1 | 16 |
Module106 | 31 | 29 | GO:0016879 | molecular_function | ligase activity, forming carbon-nitrogen bonds | 0.013212155 | 2 | 161 |
Module106 | 31 | 30 | GO:0046872 | molecular_function | metal ion binding | 0.013576974 | 8 | 3184 |
Module106 | 31 | 31 | GO:0043169 | molecular_function | cation binding | 0.013886135 | 8 | 3196 |
Module106 | 31 | 32 | GO:0006901 | biological_process | vesicle coating | 0.014600435 | 1 | 18 |
Module106 | 31 | 33 | GO:0006900 | biological_process | membrane budding | 0.015405859 | 1 | 19 |
Module106 | 31 | 34 | GO:0051261 | biological_process | protein depolymerization | 0.016210684 | 1 | 20 |
Module106 | 31 | 35 | GO:0007346 | biological_process | regulation of mitotic cell cycle | 0.016210684 | 1 | 20 |
Module106 | 31 | 36 | GO:0042742 | biological_process | defense response to bacterium | 0.01624914 | 2 | 245 |
Module106 | 31 | 37 | GO:0005545 | molecular_function | 1-phosphatidylinositol binding | 0.017420845 | 1 | 16 |
Module106 | 31 | 38 | GO:0016050 | biological_process | vesicle organization | 0.018621573 | 1 | 23 |
Module106 | 31 | 39 | GO:0010638 | biological_process | positive regulation of organelle organization | 0.02102709 | 1 | 26 |
Module106 | 31 | 40 | GO:0006412 | biological_process | translation | 0.02254327 | 3 | 781 |
Module106 | 31 | 41 | GO:0043043 | biological_process | peptide biosynthetic process | 0.023159582 | 3 | 789 |
Module106 | 31 | 42 | GO:0009617 | biological_process | response to bacterium | 0.023644039 | 2 | 299 |
Module106 | 31 | 43 | GO:0030276 | molecular_function | clathrin binding | 0.023879454 | 1 | 22 |
Module106 | 31 | 44 | GO:0006518 | biological_process | peptide metabolic process | 0.024984314 | 3 | 812 |
Module106 | 31 | 45 | GO:0051493 | biological_process | regulation of cytoskeleton organization | 0.025024376 | 1 | 31 |
Module106 | 31 | 46 | GO:0006396 | biological_process | RNA processing | 0.025446997 | 2 | 311 |
Module106 | 31 | 47 | GO:0043604 | biological_process | amide biosynthetic process | 0.025802185 | 3 | 822 |
Module106 | 31 | 48 | GO:0051130 | biological_process | positive regulation of cellular component organization | 0.02582205 | 1 | 32 |
Module106 | 31 | 49 | GO:0046914 | molecular_function | transition metal ion binding | 0.026897301 | 6 | 2226 |
Module106 | 31 | 50 | GO:0003723 | molecular_function | RNA binding | 0.027651217 | 3 | 611 |
Module106 | 31 | 51 | GO:0001558 | biological_process | regulation of cell growth | 0.028211515 | 1 | 35 |
Module106 | 31 | 52 | GO:0043624 | biological_process | cellular protein complex disassembly | 0.029006818 | 1 | 36 |
Module106 | 31 | 53 | GO:0090406 | cellular_component | pollen tube | 0.029182706 | 1 | 26 |
Module106 | 31 | 54 | GO:0043603 | biological_process | cellular amide metabolic process | 0.029667051 | 3 | 867 |
Module106 | 31 | 55 | GO:0042995 | cellular_component | cell projection | 0.030289366 | 1 | 27 |
Module106 | 31 | 56 | GO:0043241 | biological_process | protein complex disassembly | 0.03138918 | 1 | 39 |
Module106 | 31 | 57 | GO:0032984 | biological_process | macromolecular complex disassembly | 0.03138918 | 1 | 39 |
Module106 | 31 | 58 | GO:0048767 | biological_process | root hair elongation | 0.032182119 | 1 | 40 |
Module106 | 31 | 59 | GO:0022411 | biological_process | cellular component disassembly | 0.032182119 | 1 | 40 |
Module106 | 31 | 60 | GO:0071822 | biological_process | protein complex subunit organization | 0.032696015 | 2 | 356 |
Module106 | 31 | 61 | GO:0048638 | biological_process | regulation of developmental growth | 0.037716188 | 1 | 47 |
Module106 | 31 | 62 | GO:0010467 | biological_process | gene expression | 0.038272456 | 5 | 2512 |
Module106 | 31 | 63 | GO:0098542 | biological_process | defense response to other organism | 0.039753817 | 2 | 396 |
Module106 | 31 | 64 | GO:0008017 | molecular_function | microtubule binding | 0.039851011 | 1 | 37 |
Module106 | 31 | 65 | GO:0005622 | cellular_component | intracellular | 0.041486781 | 12 | 8096 |
Module106 | 31 | 66 | GO:0006364 | biological_process | rRNA processing | 0.041651465 | 1 | 52 |
Module106 | 31 | 67 | GO:0015631 | molecular_function | tubulin binding | 0.041961808 | 1 | 39 |
Module106 | 31 | 68 | GO:0035091 | molecular_function | phosphatidylinositol binding | 0.043015562 | 1 | 40 |
Module106 | 31 | 69 | GO:1990904 | cellular_component | ribonucleoprotein complex | 0.043920829 | 3 | 721 |
Module106 | 31 | 70 | GO:0030529 | cellular_component | intracellular ribonucleoprotein complex | 0.043920829 | 3 | 721 |
Module106 | 31 | 71 | GO:0080147 | biological_process | root hair cell development | 0.044005603 | 1 | 55 |
Module106 | 31 | 72 | GO:0030118 | cellular_component | clathrin coat | 0.044571101 | 1 | 40 |
Module106 | 31 | 73 | GO:0016874 | molecular_function | ligase activity | 0.044630307 | 2 | 310 |
Module106 | 31 | 74 | GO:0000226 | biological_process | microtubule cytoskeleton organization | 0.045572106 | 1 | 57 |
Module106 | 31 | 75 | GO:0016072 | biological_process | rRNA metabolic process | 0.045572106 | 1 | 57 |
Module106 | 31 | 76 | GO:0010119 | biological_process | regulation of stomatal movement | 0.046354482 | 1 | 58 |
Module106 | 31 | 77 | GO:0046686 | biological_process | response to cadmium ion | 0.046763773 | 2 | 433 |
Module106 | 31 | 78 | GO:0008283 | biological_process | cell proliferation | 0.047136276 | 1 | 59 |
Module106 | 31 | 79 | GO:0048527 | biological_process | lateral root development | 0.048698114 | 1 | 61 |
Module106 | 31 | 80 | GO:0009266 | biological_process | response to temperature stimulus | 0.049530852 | 2 | 447 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G012052 | GRMZM2G007276 | 0.0372 |
GRMZM2G007276 | GRMZM2G038284 | 0.0661 |
GRMZM2G007276 | GRMZM2G064136 | 0.047 |
GRMZM2G007276 | GRMZM2G108474 | 0.0366 |
GRMZM2G007276 | GRMZM2G134980 | 0.0472 |
GRMZM2G007276 | GRMZM2G152599 | 0.0395 |
GRMZM2G007276 | GRMZM2G330019 | 0.0609 |
GRMZM2G007276 | cdj2 | 0.0399 |
GRMZM2G007276 | tif1 | 0.0404 |
GRMZM2G007276 | znf1 | 0.1021 |
GRMZM2G007276 | GRMZM6G902674 | 0.0358 |
AC209835.4_FG004 | GRMZM2G064136 | 0.0901 |
AC209835.4_FG004 | GRMZM2G089631 | 0.0607 |
AC209835.4_FG004 | GRMZM2G120918 | 0.088 |
AC209835.4_FG004 | GRMZM2G330019 | 0.0356 |
AC209835.4_FG004 | znf1 | 0.0395 |
GRMZM2G038284 | GRMZM2G064136 | 0.0523 |
GRMZM2G038284 | GRMZM2G134980 | 0.0491 |
GRMZM2G038284 | GRMZM2G330019 | 0.0651 |
GRMZM2G038284 | cdj2 | 0.0412 |
GRMZM2G038284 | znf1 | 0.0737 |
GRMZM2G064136 | GRMZM2G089631 | 0.0408 |
GRMZM2G064136 | GRMZM2G120918 | 0.0963 |
GRMZM2G064136 | GRMZM2G134980 | 0.0386 |
GRMZM2G064136 | GRMZM2G330019 | 0.0473 |
GRMZM2G064136 | znf1 | 0.0576 |
GRMZM2G064807 | hagtf20 | 0.0406 |
hagtf20 | GRMZM2G152599 | 0.0357 |
tct1 | GRMZM2G108474 | 0.0659 |
GRMZM2G076827 | GRMZM2G150160 | 0.0396 |
GRMZM2G108474 | GRMZM2G031586 | 0.0421 |
GRMZM2G108474 | GRMZM2G134980 | 0.0407 |
GRMZM2G108474 | cdj2 | 0.0416 |
GRMZM2G108474 | GRMZM6G902674 | 0.0358 |
GRMZM2G120918 | znf1 | 0.0402 |
GRMZM2G126338 | umc2224 | 0.0368 |
umc2224 | GRMZM2G330019 | 0.06 |
GRMZM2G134980 | GRMZM2G330019 | 0.0466 |
GRMZM2G134980 | cdj2 | 0.0639 |
GRMZM2G134980 | znf1 | 0.0469 |
GRMZM2G150160 | znf1 | 0.0407 |
GRMZM2G152599 | znf1 | 0.0465 |
GRMZM2G171518 | GRMZM2G056270 | 0.0372 |
GRMZM2G056270 | GRMZM5G831993 | 0.0409 |
GRMZM2G056270 | znf1 | 0.0538 |
GRMZM2G330019 | cdj2 | 0.0399 |
GRMZM2G330019 | znf1 | 0.066 |
cdj2 | znf1 | 0.0404 |
GRMZM2G385945 | GRMZM2G134759 | 0.0396 |
GRMZM2G385945 | znf1 | 0.0464 |
GRMZM5G831993 | GRMZM2G103490 | 0.0351 |
GRMZM5G831993 | znf1 | 0.0399 |
tif1 | znf1 | 0.0459 |
znf1 | GRMZM2G114758 | 0.0356 |
znf1 | GRMZM2G165939 | 0.0397 |