This page contains information for Module107, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G014844 | glu3 | Module107 | AT5G44640 | BGLU13 | beta glucosidase 13 | beta glucosidase 13 | |
GRMZM2G015767 | Module107 | AT2G02040 | PTR2 | peptide transporter 2 | peptide transporter 2 | ||
GRMZM2G015708 | Module107 | AT1G71691 | AT1G71691 | GDSL-like Lipase/Acylhydrolase superfamily protein | |||
GRMZM2G016744 | Module107 | AT2G41940 | ZFP8 | zinc finger protein 8 | zinc finger protein 8 | C2H2 | |
GRMZM2G011401 | Module107 | AT1G80080 | TMM | TOO MANY MOUTHS | Leucine-rich repeat (LRR) family protein | ||
GRMZM2G031338 | Module107 | ||||||
GRMZM2G036120 | Module107 | AT3G46540 | AT3G46540 | ENTH/VHS family protein | |||
GRMZM2G040268 | Module107 | ||||||
GRMZM2G045109 | bhlh34 | Module107 | AT5G53210 | SPCH | SPEECHLESS | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
GRMZM2G062618 | Module107 | AT5G23100 | AT5G23100 | Protein of unknown function, DUF617 | |||
GRMZM2G064638 | bhlh139 | Module107 | AT5G53210 | SPCH | SPEECHLESS | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
GRMZM2G064903 | Module107 | AT1G80450 | AT1G80450 | VQ motif-containing protein | |||
GRMZM2G096016 | ca2p14 | Module107 | AT5G06510 | NF-YA10 | nuclear factor Y, subunit A10 | nuclear factor Y, subunit A10 | CCAAT |
GRMZM2G097349 | hb49 | Module107 | AT1G69780 | ATHB13 | Homeobox-leucine zipper protein family | HB | |
GRMZM2G133291 | Module107 | AT5G06270 | AT5G06270 | ||||
GRMZM2G152143 | Module107 | ||||||
GRMZM2G156127 | Module107 | AT3G55700 | AT3G55700 | UDP-Glycosyltransferase superfamily protein | |||
GRMZM2G163761 | kip1 | Module107 | AT2G16400 | BLH7 | BEL1-like homeodomain 7 | BEL1-like homeodomain 7 | HB |
GRMZM2G165005 | Module107 | AT5G67390 | AT5G67390 | ||||
GRMZM2G178769 | hct8 | Module107 | AT5G48930 | HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | |
GRMZM2G306734 | Module107 | AT1G19715 | AT1G19715 | Mannose-binding lectin superfamily protein | |||
GRMZM2G329710 | Module107 | AT5G06920 | FLA21 | FASCICLIN-like arabinogalactan protein 21 precursor | FASCICLIN-like arabinogalactan protein 21 precursor | ||
GRMZM2G343769 | Module107 | AT5G48820 | ICK6 | inhibitor/interactor with cyclin-dependent kinase | inhibitor/interactor with cyclin-dependent kinase | ||
GRMZM2G392918 | Module107 | AT5G06270 | AT5G06270 | ||||
GRMZM2G442170 | Module107 | AT3G51280 | AT3G51280 | Tetratricopeptide repeat (TPR)-like superfamily protein | |||
GRMZM2G472945 | tubtf8 | Module107 | AT1G16070 | TLP8 | tubby like protein 8 | tubby like protein 8 | TUB |
GRMZM5G807019 | Module107 | AT4G31430 | AT4G31430 | ||||
GRMZM5G850129 | grftf11 | Module107 | AT3G52910 | GRF4 | growth-regulating factor 4 | growth-regulating factor 4 | GRF |
GRMZM2G015983 | Module107 | AT2G03220 | FT1 | fucosyltransferase 1 | fucosyltransferase 1 | ||
GRMZM5G880063 | Module107 | ||||||
GRMZM6G039492 | Module107 | AT5G42630 | ATS | ABERRANT TESTA SHAPE | Homeodomain-like superfamily protein | G2-like |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module107 | 31 | 1 | GO:0030291 | molecular_function | protein serine/threonine kinase inhibitor activity | 0.00765721 | 1 | 7 |
Module107 | 31 | 2 | GO:0004860 | molecular_function | protein kinase inhibitor activity | 0.00765721 | 1 | 7 |
Module107 | 31 | 3 | GO:0004861 | molecular_function | cyclin-dependent protein serine/threonine kinase inhibitor activity | 0.00765721 | 1 | 7 |
Module107 | 31 | 4 | GO:0007050 | biological_process | cell cycle arrest | 0.008651233 | 1 | 9 |
Module107 | 31 | 5 | GO:0031127 | molecular_function | alpha-(1,2)-fucosyltransferase activity | 0.008746566 | 1 | 8 |
Module107 | 31 | 6 | GO:0008107 | molecular_function | galactoside 2-alpha-L-fucosyltransferase activity | 0.008746566 | 1 | 8 |
Module107 | 31 | 7 | GO:0019210 | molecular_function | kinase inhibitor activity | 0.008746566 | 1 | 8 |
Module107 | 31 | 8 | GO:0008356 | biological_process | asymmetric cell division | 0.01151959 | 1 | 12 |
Module107 | 31 | 9 | GO:0008417 | molecular_function | fucosyltransferase activity | 0.012007862 | 1 | 11 |
Module107 | 31 | 10 | GO:0016538 | molecular_function | cyclin-dependent protein serine/threonine kinase regulator activity | 0.012007862 | 1 | 11 |
Module107 | 31 | 11 | GO:0005634 | cellular_component | nucleus | 0.012864563 | 6 | 2423 |
Module107 | 31 | 12 | GO:0009620 | biological_process | response to fungus | 0.01448865 | 2 | 194 |
Module107 | 31 | 13 | GO:0019887 | molecular_function | protein kinase regulator activity | 0.019578186 | 1 | 18 |
Module107 | 31 | 14 | GO:0045786 | biological_process | negative regulation of cell cycle | 0.020078759 | 1 | 21 |
Module107 | 31 | 15 | GO:0000976 | molecular_function | transcription regulatory region sequence-specific DNA binding | 0.021731053 | 1 | 20 |
Module107 | 31 | 16 | GO:0019207 | molecular_function | kinase regulator activity | 0.022805811 | 1 | 21 |
Module107 | 31 | 17 | GO:1990837 | molecular_function | sequence-specific double-stranded DNA binding | 0.026023399 | 1 | 24 |
Module107 | 31 | 18 | GO:0010374 | biological_process | stomatal complex development | 0.028569471 | 1 | 30 |
Module107 | 31 | 19 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.029782229 | 4 | 1293 |
Module107 | 31 | 20 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.029782229 | 4 | 1293 |
Module107 | 31 | 21 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.029782229 | 4 | 1293 |
Module107 | 31 | 22 | GO:0044212 | molecular_function | transcription regulatory region DNA binding | 0.030297954 | 1 | 28 |
Module107 | 31 | 23 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.030620491 | 4 | 1304 |
Module107 | 31 | 24 | GO:0001067 | molecular_function | regulatory region nucleic acid binding | 0.031363821 | 1 | 29 |
Module107 | 31 | 25 | GO:0000975 | molecular_function | regulatory region DNA binding | 0.031363821 | 1 | 29 |
Module107 | 31 | 26 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.032900322 | 4 | 1333 |
Module107 | 31 | 27 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.036298093 | 4 | 1374 |
Module107 | 31 | 28 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.036298093 | 4 | 1374 |
Module107 | 31 | 29 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.036782721 | 3 | 683 |
Module107 | 31 | 30 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.036919449 | 3 | 684 |
Module107 | 31 | 31 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.039183064 | 4 | 1407 |
Module107 | 31 | 32 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.039362247 | 4 | 1409 |
Module107 | 31 | 33 | GO:0010150 | biological_process | leaf senescence | 0.039784797 | 1 | 42 |
Module107 | 31 | 34 | GO:0010468 | biological_process | regulation of gene expression | 0.039812379 | 4 | 1414 |
Module107 | 31 | 35 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.039812379 | 4 | 1414 |
Module107 | 31 | 36 | GO:0006351 | biological_process | transcription, DNA-templated | 0.039812379 | 4 | 1414 |
Module107 | 31 | 37 | GO:0032774 | biological_process | RNA biosynthetic process | 0.040265623 | 4 | 1419 |
Module107 | 31 | 38 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.040539064 | 4 | 1422 |
Module107 | 31 | 39 | GO:0010260 | biological_process | organ senescence | 0.040713992 | 1 | 43 |
Module107 | 31 | 40 | GO:0003677 | molecular_function | DNA binding | 0.048115533 | 5 | 1891 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
glu3 | GRMZM2G015767 | 0.0448 |
glu3 | bhlh34 | 0.077 |
glu3 | GRMZM2G152143 | 0.042 |
glu3 | GRMZM2G442170 | 0.0364 |
glu3 | GRMZM5G880063 | 0.0489 |
GRMZM2G015708 | ca2p14 | 0.0531 |
GRMZM2G015708 | GRMZM2G165005 | 0.0681 |
GRMZM2G015708 | hct8 | 0.0403 |
GRMZM2G016744 | GRMZM2G011401 | 0.0738 |
GRMZM2G016744 | GRMZM2G031338 | 0.0388 |
GRMZM2G016744 | GRMZM2G040268 | 0.1134 |
GRMZM2G016744 | bhlh34 | 0.0879 |
GRMZM2G016744 | GRMZM2G062618 | 0.0517 |
GRMZM2G016744 | bhlh139 | 0.116 |
GRMZM2G016744 | GRMZM2G133291 | 0.0568 |
GRMZM2G016744 | kip1 | 0.0565 |
GRMZM2G016744 | GRMZM2G392918 | 0.0416 |
GRMZM2G011401 | GRMZM2G036120 | 0.0436 |
GRMZM2G011401 | GRMZM2G040268 | 0.0926 |
GRMZM2G011401 | bhlh34 | 0.1804 |
GRMZM2G011401 | bhlh139 | 0.0789 |
GRMZM2G011401 | ca2p14 | 0.0355 |
GRMZM2G011401 | GRMZM2G156127 | 0.0358 |
GRMZM2G011401 | GRMZM2G306734 | 0.0764 |
GRMZM2G011401 | GRMZM2G392918 | 0.0476 |
GRMZM2G011401 | grftf11 | 0.0498 |
GRMZM2G011401 | GRMZM5G880063 | 0.0393 |
GRMZM2G031338 | bhlh34 | 0.0696 |
GRMZM2G036120 | bhlh34 | 0.041 |
GRMZM2G036120 | GRMZM2G343769 | 0.062 |
GRMZM2G036120 | tubtf8 | 0.0353 |
GRMZM2G040268 | bhlh34 | 0.2025 |
GRMZM2G040268 | bhlh139 | 0.0825 |
GRMZM2G040268 | GRMZM2G064903 | 0.0444 |
GRMZM2G040268 | ca2p14 | 0.0425 |
GRMZM2G040268 | kip1 | 0.0389 |
GRMZM2G040268 | GRMZM2G442170 | 0.0691 |
GRMZM2G040268 | GRMZM5G880063 | 0.0444 |
bhlh34 | bhlh139 | 0.1756 |
bhlh34 | GRMZM2G064903 | 0.0448 |
bhlh34 | ca2p14 | 0.039 |
bhlh34 | GRMZM2G156127 | 0.0431 |
bhlh34 | kip1 | 0.0453 |
bhlh34 | GRMZM2G165005 | 0.0529 |
bhlh34 | GRMZM2G392918 | 0.0379 |
bhlh34 | GRMZM2G442170 | 0.0811 |
GRMZM2G062618 | hb49 | 0.0351 |
GRMZM2G062618 | GRMZM2G165005 | 0.0351 |
bhlh139 | ca2p14 | 0.0597 |
bhlh139 | GRMZM2G165005 | 0.049 |
bhlh139 | GRMZM2G306734 | 0.0703 |
bhlh139 | GRMZM2G392918 | 0.0545 |
bhlh139 | GRMZM6G039492 | 0.0783 |
GRMZM2G064903 | kip1 | 0.0699 |
GRMZM2G064903 | grftf11 | 0.0457 |
ca2p14 | GRMZM2G133291 | 0.0412 |
ca2p14 | GRMZM6G039492 | 0.047 |
GRMZM2G133291 | GRMZM2G392918 | 0.0398 |
GRMZM2G156127 | grftf11 | 0.0361 |
GRMZM2G329710 | GRMZM2G442170 | 0.0433 |
GRMZM2G329710 | grftf11 | 0.055 |
GRMZM2G442170 | GRMZM5G807019 | 0.0409 |
GRMZM2G442170 | GRMZM5G880063 | 0.0477 |
grftf11 | GRMZM2G015983 | -0.0362 |