This page contains information for Module111, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G052483 | Module111 | ||||||
GRMZM2G059556 | Module111 | AT3G03070 | AT3G03070 | NADH-ubiquinone oxidoreductase-related | |||
GRMZM2G060106 | Module111 | ||||||
GRMZM2G002529 | Module111 | ||||||
GRMZM2G100568 | Module111 | ||||||
GRMZM2G033930 | Module111 | AT3G01640 | GLCAK | glucuronokinase G | glucuronokinase G | ||
GRMZM2G050705 | Module111 | AT4G16710 | AT4G16710 | glycosyltransferase family protein 28 | |||
GRMZM2G029356 | Module111 | ||||||
GRMZM2G125823 | Module111 | AT5G61250 | GUS1 | glucuronidase 1 | glucuronidase 1 | ||
GRMZM2G150485 | Module111 | AT3G12290 | AT3G12290 | Amino acid dehydrogenase family protein | |||
GRMZM2G082007 | si683005e02 | Module111 | AT3G53140 | AT3G53140 | O-methyltransferase family protein | ||
GRMZM2G161761 | Module111 | ||||||
GRMZM2G171967 | Module111 | AT1G24440 | AT1G24440 | RING/U-box superfamily protein | |||
GRMZM2G306677 | Module111 | AT2G37550 | AGD7 | ARF-GAP domain 7 | ARF-GAP domain 7 | ||
GRMZM2G012601 | Module111 | AT4G15880 | ESD4 | EARLY IN SHORT DAYS 4 | Cysteine proteinases superfamily protein | ||
GRMZM2G364068 | pza00271 | Module111 | AT1G06190 | RHON1 | Rho-N 1 | Rho termination factor | |
GRMZM2G368806 | Module111 | AT3G53710 | AGD6 | ARF-GAP domain 6 | ARF-GAP domain 6 | ||
GRMZM2G405307 | Module111 | ||||||
GRMZM2G542994 | Module111 | AT1G02140 | MAGO | MAGO NASHI | mago nashi family protein | ||
GRMZM5G830269 | Module111 | ||||||
GRMZM5G835721 | Module111 | ||||||
GRMZM2G124797 | Module111 | ||||||
GRMZM5G864363 | Module111 | AT4G34700 | CIB22 | B22 subunit of eukaryotic mitochondrial Complex I | LYR family of Fe/S cluster biogenesis protein | ||
GRMZM5G866269 | Module111 | ||||||
GRMZM5G892124 | Module111 | ||||||
GRMZM5G895799 | Module111 | ||||||
GRMZM2G033093 | Module111 | AT3G57230 | AGL16 | AGAMOUS-like 16 | AGAMOUS-like 16 | MADS | |
GRMZM5G896114 | Module111 | ||||||
GRMZM5G896756 | Module111 | ||||||
GRMZM2G132301 | Module111 | AT5G23395 | MIA40 | mitochondrial intermembrane space assembly machinery 40 | Cox19-like CHCH family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module111 | 30 | 1 | GO:0004488 | molecular_function | methylenetetrahydrofolate dehydrogenase (NADP+) activity | 0.002010478 | 1 | 3 |
Module111 | 30 | 2 | GO:0035145 | cellular_component | exon-exon junction complex | 0.004540932 | 1 | 6 |
Module111 | 30 | 3 | GO:0006353 | biological_process | DNA-templated transcription, termination | 0.004666658 | 1 | 7 |
Module111 | 30 | 4 | GO:0019783 | molecular_function | ubiquitin-like protein-specific protease activity | 0.0046854 | 1 | 7 |
Module111 | 30 | 5 | GO:0030259 | biological_process | lipid glycosylation | 0.005996429 | 1 | 9 |
Module111 | 30 | 6 | GO:0016646 | molecular_function | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | 0.006687312 | 1 | 10 |
Module111 | 30 | 7 | GO:0050918 | biological_process | positive chemotaxis | 0.009313949 | 1 | 14 |
Module111 | 30 | 8 | GO:0010183 | biological_process | pollen tube guidance | 0.009313949 | 1 | 14 |
Module111 | 30 | 9 | GO:0070646 | biological_process | protein modification by small protein removal | 0.009313949 | 1 | 14 |
Module111 | 30 | 10 | GO:0042330 | biological_process | taxis | 0.009313949 | 1 | 14 |
Module111 | 30 | 11 | GO:0006935 | biological_process | chemotaxis | 0.009313949 | 1 | 14 |
Module111 | 30 | 12 | GO:0070585 | biological_process | protein localization to mitochondrion | 0.009976271 | 1 | 15 |
Module111 | 30 | 13 | GO:0072655 | biological_process | establishment of protein localization to mitochondrion | 0.009976271 | 1 | 15 |
Module111 | 30 | 14 | GO:0006626 | biological_process | protein targeting to mitochondrion | 0.009976271 | 1 | 15 |
Module111 | 30 | 15 | GO:0072662 | biological_process | protein localization to peroxisome | 0.011299733 | 1 | 17 |
Module111 | 30 | 16 | GO:0072663 | biological_process | establishment of protein localization to peroxisome | 0.011299733 | 1 | 17 |
Module111 | 30 | 17 | GO:0006625 | biological_process | protein targeting to peroxisome | 0.011299733 | 1 | 17 |
Module111 | 30 | 18 | GO:0043574 | biological_process | peroxisomal transport | 0.011960875 | 1 | 18 |
Module111 | 30 | 19 | GO:0009396 | biological_process | folic acid-containing compound biosynthetic process | 0.011960875 | 1 | 18 |
Module111 | 30 | 20 | GO:0040011 | biological_process | locomotion | 0.011960875 | 1 | 18 |
Module111 | 30 | 21 | GO:0008187 | molecular_function | poly-pyrimidine tract binding | 0.012007862 | 1 | 18 |
Module111 | 30 | 22 | GO:0008266 | molecular_function | poly(U) RNA binding | 0.012007862 | 1 | 18 |
Module111 | 30 | 23 | GO:0042559 | biological_process | pteridine-containing compound biosynthetic process | 0.013281979 | 1 | 20 |
Module111 | 30 | 24 | GO:0006839 | biological_process | mitochondrial transport | 0.013941942 | 1 | 21 |
Module111 | 30 | 25 | GO:0016607 | cellular_component | nuclear speck | 0.015814415 | 1 | 21 |
Module111 | 30 | 26 | GO:0048518 | biological_process | positive regulation of biological process | 0.017484965 | 2 | 314 |
Module111 | 30 | 27 | GO:0016645 | molecular_function | oxidoreductase activity, acting on the CH-NH group of donors | 0.017962503 | 1 | 27 |
Module111 | 30 | 28 | GO:0003727 | molecular_function | single-stranded RNA binding | 0.018622111 | 1 | 28 |
Module111 | 30 | 29 | GO:0006760 | biological_process | folic acid-containing compound metabolic process | 0.019207537 | 1 | 29 |
Module111 | 30 | 30 | GO:0042558 | biological_process | pteridine-containing compound metabolic process | 0.020520024 | 1 | 31 |
Module111 | 30 | 31 | GO:0007031 | biological_process | peroxisome organization | 0.021830949 | 1 | 33 |
Module111 | 30 | 32 | GO:0007005 | biological_process | mitochondrion organization | 0.024448122 | 1 | 37 |
Module111 | 30 | 33 | GO:0009911 | biological_process | positive regulation of flower development | 0.025101442 | 1 | 38 |
Module111 | 30 | 34 | GO:0008171 | molecular_function | O-methyltransferase activity | 0.025851272 | 1 | 39 |
Module111 | 30 | 35 | GO:0042398 | biological_process | cellular modified amino acid biosynthetic process | 0.026406916 | 1 | 40 |
Module111 | 30 | 36 | GO:2000243 | biological_process | positive regulation of reproductive process | 0.030314017 | 1 | 46 |
Module111 | 30 | 37 | GO:0016604 | cellular_component | nuclear body | 0.032883474 | 1 | 44 |
Module111 | 30 | 38 | GO:0048582 | biological_process | positive regulation of post-embryonic development | 0.037440854 | 1 | 57 |
Module111 | 30 | 39 | GO:0051240 | biological_process | positive regulation of multicellular organismal process | 0.040664905 | 1 | 62 |
Module111 | 30 | 40 | GO:0051094 | biological_process | positive regulation of developmental process | 0.044521092 | 1 | 68 |
Module111 | 30 | 41 | GO:0010628 | biological_process | positive regulation of gene expression | 0.047084224 | 1 | 72 |
Module111 | 30 | 42 | GO:0006575 | biological_process | cellular modified amino acid metabolic process | 0.047724051 | 1 | 73 |
Module111 | 30 | 43 | GO:0018205 | biological_process | peptidyl-lysine modification | 0.049641241 | 1 | 76 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G052483 | GRMZM2G161761 | 0.054 |
GRMZM2G059556 | pza00271 | 0.0395 |
GRMZM2G060106 | GRMZM5G892124 | 0.0746 |
GRMZM2G002529 | GRMZM2G100568 | 0.0373 |
GRMZM2G002529 | GRMZM2G125823 | 0.0464 |
GRMZM2G002529 | GRMZM2G161761 | 0.0517 |
GRMZM2G002529 | GRMZM5G830269 | 0.0454 |
GRMZM2G100568 | GRMZM2G033930 | 0.0492 |
GRMZM2G100568 | GRMZM2G050705 | 0.0401 |
GRMZM2G100568 | GRMZM2G161761 | 0.0718 |
GRMZM2G100568 | GRMZM2G171967 | 0.0432 |
GRMZM2G100568 | GRMZM2G405307 | 0.0409 |
GRMZM2G100568 | GRMZM5G830269 | 0.0442 |
GRMZM2G100568 | GRMZM5G864363 | 0.0437 |
GRMZM2G100568 | GRMZM5G895799 | 0.0446 |
GRMZM2G100568 | GRMZM5G896756 | 0.0415 |
GRMZM2G033930 | GRMZM2G161761 | 0.0352 |
GRMZM2G033930 | GRMZM5G864363 | 0.0419 |
GRMZM2G029356 | GRMZM5G864363 | 0.0355 |
GRMZM2G150485 | si683005e02 | 0.0358 |
si683005e02 | GRMZM5G864363 | 0.0358 |
GRMZM2G161761 | GRMZM2G171967 | 0.0378 |
GRMZM2G161761 | GRMZM2G405307 | 0.0389 |
GRMZM2G161761 | GRMZM5G830269 | 0.0564 |
GRMZM2G161761 | GRMZM5G895799 | 0.0465 |
GRMZM2G306677 | GRMZM2G012601 | 0.04 |
GRMZM2G306677 | GRMZM2G368806 | 0.0411 |
GRMZM2G306677 | GRMZM5G896756 | 0.0417 |
pza00271 | GRMZM2G542994 | 0.0371 |
pza00271 | GRMZM5G864363 | 0.0609 |
GRMZM2G405307 | GRMZM5G830269 | 0.1043 |
GRMZM2G405307 | GRMZM5G835721 | 0.0415 |
GRMZM2G405307 | GRMZM5G866269 | 0.072 |
GRMZM2G405307 | GRMZM5G896114 | 0.0364 |
GRMZM5G830269 | GRMZM5G835721 | 0.0592 |
GRMZM5G830269 | GRMZM5G896114 | 0.0409 |
GRMZM5G835721 | GRMZM2G124797 | 0.036 |
GRMZM5G835721 | GRMZM5G896114 | 0.0489 |
GRMZM2G124797 | GRMZM5G866269 | 0.0575 |
GRMZM5G864363 | GRMZM5G892124 | 0.0351 |
GRMZM5G895799 | GRMZM2G033093 | 0.0362 |
GRMZM5G896756 | GRMZM2G132301 | 0.0431 |