This page contains information for Module113, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC199363.4_FG003 | Module113 | AT5G12430 | TPR16 | tetratricopeptide repeat 16 | Heat shock protein DnaJ with tetratricopeptide repeat | ||
AC177936.6_FG008 | Module113 | AT5G46210 | CUL4 | cullin4 | cullin4 | ||
GRMZM2G069500 | Module113 | ||||||
GRMZM2G026654 | Module113 | AT1G67060 | AT1G67060 | ||||
GRMZM2G029785 | Module113 | AT2G34780 | MEE22 | MATERNAL EFFECT EMBRYO ARREST 22 | maternal effect embryo arrest 22 | ||
GRMZM2G073250 | Module113 | AT3G09010 | AT3G09010 | Protein kinase superfamily protein | |||
GRMZM2G030955 | Module113 | AT3G29270 | AT3G29270 | RING/U-box superfamily protein | |||
GRMZM2G100741 | Module113 | AT4G33690 | AT4G33690 | ||||
GRMZM2G104255 | Module113 | AT2G36960 | TKI1 | TSL-kinase interacting protein 1 | TSL-kinase interacting protein 1 | MYB-related | |
GRMZM2G059937 | Module113 | AT5G57490 | VDAC4 | voltage dependent anion channel 4 | voltage dependent anion channel 4 | ||
GRMZM2G122780 | Module113 | AT3G47833 | SDH7 | succinate dehydrogenase 7 | |||
GRMZM2G136293 | Module113 | AT2G16090 | ARI2 | ARIADNE 2 | RING/U-box superfamily protein | ||
GRMZM2G151009 | Module113 | AT1G01230 | AT1G01230 | ORMDL family protein | |||
GRMZM2G153611 | Module113 | AT2G16090 | ARI2 | ARIADNE 2 | RING/U-box superfamily protein | ||
GRMZM2G171036 | Module113 | AT1G55240 | AT1G55240 | Family of unknown function (DUF716) | |||
GRMZM2G300990 | Module113 | AT4G24740 | FC2 | FUS3-complementing gene 2 | FUS3-complementing gene 2 | ||
GRMZM2G443240 | Module113 | AT2G20210 | AT2G20210 | RNI-like superfamily protein | |||
GRMZM2G119104 | pza02487 | Module113 | AT3G19630 | AT3G19630 | Radical SAM superfamily protein | ||
GRMZM2G457201 | Module113 | AT3G19650 | AT3G19650 | cyclin-related | |||
GRMZM2G588223 | Module113 | AT4G21670 | CPL1 | C-terminal domain phosphatase-like 1 | C-terminal domain phosphatase-like 1 | ||
GRMZM5G856434 | Module113 | AT1G07840 | AT1G07840 | Sas10/Utp3/C1D family | |||
GRMZM5G857351 | Module113 | ||||||
GRMZM5G863784 | Module113 | AT1G67690 | AT1G67690 | Zincin-like metalloproteases family protein | |||
GRMZM5G885445 | Module113 | ||||||
GRMZM2G020142 | Module113 | AT4G21710 | NRPB2 | DNA-directed RNA polymerase family protein | |||
GRMZM2G025236 | Module113 | AT5G65000 | AT5G65000 | Nucleotide-sugar transporter family protein | |||
GRMZM2G085301 | Module113 | AT5G59250 | AT5G59250 | Major facilitator superfamily protein | |||
GRMZM2G124377 | Module113 | AT2G22530 | AT2G22530 | Alkaline-phosphatase-like family protein | |||
GRMZM6G792203 | Module113 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module113 | 29 | 1 | GO:0005338 | molecular_function | nucleotide-sugar transmembrane transporter activity | 0.011645761 | 1 | 12 |
Module113 | 29 | 2 | GO:0005665 | cellular_component | DNA-directed RNA polymerase II, core complex | 0.013193044 | 1 | 14 |
Module113 | 29 | 3 | GO:0015780 | biological_process | nucleotide-sugar transport | 0.013794412 | 1 | 17 |
Module113 | 29 | 4 | GO:0044070 | biological_process | regulation of anion transport | 0.015405859 | 1 | 19 |
Module113 | 29 | 5 | GO:0044389 | molecular_function | ubiquitin-like protein ligase binding | 0.015499342 | 1 | 16 |
Module113 | 29 | 6 | GO:0031625 | molecular_function | ubiquitin protein ligase binding | 0.015499342 | 1 | 16 |
Module113 | 29 | 7 | GO:0005402 | molecular_function | cation:sugar symporter activity | 0.017420845 | 1 | 18 |
Module113 | 29 | 8 | GO:0005351 | molecular_function | sugar:proton symporter activity | 0.017420845 | 1 | 18 |
Module113 | 29 | 9 | GO:0003725 | molecular_function | double-stranded RNA binding | 0.02029651 | 1 | 21 |
Module113 | 29 | 10 | GO:0008308 | molecular_function | voltage-gated anion channel activity | 0.02125331 | 1 | 22 |
Module113 | 29 | 11 | GO:0015295 | molecular_function | solute:proton symporter activity | 0.02125331 | 1 | 22 |
Module113 | 29 | 12 | GO:0022891 | molecular_function | substrate-specific transmembrane transporter activity | 0.021280932 | 3 | 625 |
Module113 | 29 | 13 | GO:1990234 | cellular_component | transferase complex | 0.022022821 | 2 | 249 |
Module113 | 29 | 14 | GO:0005253 | molecular_function | anion channel activity | 0.022209234 | 1 | 23 |
Module113 | 29 | 15 | GO:0043269 | biological_process | regulation of ion transport | 0.022627789 | 1 | 28 |
Module113 | 29 | 16 | GO:0001510 | biological_process | RNA methylation | 0.024226108 | 1 | 30 |
Module113 | 29 | 17 | GO:0008173 | molecular_function | RNA methyltransferase activity | 0.027926422 | 1 | 29 |
Module113 | 29 | 18 | GO:0022892 | molecular_function | substrate-specific transporter activity | 0.028393168 | 3 | 698 |
Module113 | 29 | 19 | GO:0015294 | molecular_function | solute:cation symporter activity | 0.028876234 | 1 | 30 |
Module113 | 29 | 20 | GO:0006862 | biological_process | nucleotide transport | 0.029006818 | 1 | 36 |
Module113 | 29 | 21 | GO:0015215 | molecular_function | nucleotide transmembrane transporter activity | 0.029825176 | 1 | 31 |
Module113 | 29 | 22 | GO:0005244 | molecular_function | voltage-gated ion channel activity | 0.031720454 | 1 | 33 |
Module113 | 29 | 23 | GO:0051119 | molecular_function | sugar transmembrane transporter activity | 0.031720454 | 1 | 33 |
Module113 | 29 | 24 | GO:0022832 | molecular_function | voltage-gated channel activity | 0.031720454 | 1 | 33 |
Module113 | 29 | 25 | GO:0015293 | molecular_function | symporter activity | 0.031720454 | 1 | 33 |
Module113 | 29 | 26 | GO:0016591 | cellular_component | DNA-directed RNA polymerase II, holoenzyme | 0.031768561 | 1 | 34 |
Module113 | 29 | 27 | GO:0015605 | molecular_function | organophosphate ester transmembrane transporter activity | 0.033612259 | 1 | 35 |
Module113 | 29 | 28 | GO:0051049 | biological_process | regulation of transport | 0.033766226 | 1 | 42 |
Module113 | 29 | 29 | GO:0022857 | molecular_function | transmembrane transporter activity | 0.034507379 | 3 | 753 |
Module113 | 29 | 30 | GO:0005741 | cellular_component | mitochondrial outer membrane | 0.034527578 | 1 | 37 |
Module113 | 29 | 31 | GO:1901264 | biological_process | carbohydrate derivative transport | 0.034557396 | 1 | 43 |
Module113 | 29 | 32 | GO:0015932 | molecular_function | nucleobase-containing compound transmembrane transporter activity | 0.036443471 | 1 | 38 |
Module113 | 29 | 33 | GO:0032879 | biological_process | regulation of localization | 0.036927372 | 1 | 46 |
Module113 | 29 | 34 | GO:1901476 | molecular_function | carbohydrate transporter activity | 0.037385479 | 1 | 39 |
Module113 | 29 | 35 | GO:0015144 | molecular_function | carbohydrate transmembrane transporter activity | 0.037385479 | 1 | 39 |
Module113 | 29 | 36 | GO:0055029 | cellular_component | nuclear DNA-directed RNA polymerase complex | 0.039110218 | 1 | 42 |
Module113 | 29 | 37 | GO:0000428 | cellular_component | DNA-directed RNA polymerase complex | 0.039110218 | 1 | 42 |
Module113 | 29 | 38 | GO:0030880 | cellular_component | RNA polymerase complex | 0.039110218 | 1 | 42 |
Module113 | 29 | 39 | GO:0015931 | biological_process | nucleobase-containing compound transport | 0.039292058 | 1 | 49 |
Module113 | 29 | 40 | GO:0004222 | molecular_function | metalloendopeptidase activity | 0.040206326 | 1 | 42 |
Module113 | 29 | 41 | GO:0006364 | biological_process | rRNA processing | 0.041651465 | 1 | 52 |
Module113 | 29 | 42 | GO:0022836 | molecular_function | gated channel activity | 0.043019422 | 1 | 45 |
Module113 | 29 | 43 | GO:0015748 | biological_process | organophosphate ester transport | 0.044005603 | 1 | 55 |
Module113 | 29 | 44 | GO:1901505 | molecular_function | carbohydrate derivative transporter activity | 0.044890523 | 1 | 47 |
Module113 | 29 | 45 | GO:0016072 | biological_process | rRNA metabolic process | 0.045572106 | 1 | 57 |
Module113 | 29 | 46 | GO:0031461 | cellular_component | cullin-RING ubiquitin ligase complex | 0.047309665 | 1 | 51 |
Module113 | 29 | 47 | GO:1901677 | molecular_function | phosphate transmembrane transporter activity | 0.048622439 | 1 | 51 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC199363.4_FG003 | GRMZM5G885445 | 0.0388 |
AC177936.6_FG008 | GRMZM2G069500 | 0.0355 |
AC177936.6_FG008 | GRMZM5G857351 | 0.0471 |
AC177936.6_FG008 | GRMZM5G885445 | 0.0421 |
GRMZM2G069500 | GRMZM2G026654 | 0.0414 |
GRMZM2G069500 | GRMZM2G029785 | 0.0407 |
GRMZM2G069500 | GRMZM2G100741 | 0.0449 |
GRMZM2G069500 | GRMZM2G122780 | 0.042 |
GRMZM2G069500 | GRMZM2G136293 | 0.039 |
GRMZM2G069500 | GRMZM2G300990 | 0.0426 |
GRMZM2G069500 | GRMZM5G863784 | 0.0421 |
GRMZM2G069500 | GRMZM5G885445 | 0.1313 |
GRMZM2G069500 | GRMZM6G792203 | 0.0528 |
GRMZM2G073250 | GRMZM2G030955 | 0.0393 |
GRMZM2G073250 | GRMZM2G588223 | 0.0391 |
GRMZM2G100741 | GRMZM2G457201 | 0.0356 |
GRMZM2G100741 | GRMZM5G856434 | 0.0392 |
GRMZM2G100741 | GRMZM5G885445 | 0.0383 |
GRMZM2G104255 | GRMZM2G151009 | 0.0364 |
GRMZM2G059937 | GRMZM5G885445 | 0.0441 |
GRMZM2G136293 | GRMZM2G153611 | 0.0364 |
GRMZM2G136293 | GRMZM5G885445 | 0.0463 |
GRMZM2G151009 | GRMZM5G885445 | 0.0401 |
GRMZM2G171036 | GRMZM5G885445 | 0.041 |
GRMZM2G443240 | pza02487 | 0.0363 |
GRMZM2G443240 | GRMZM5G885445 | 0.0417 |
GRMZM2G588223 | GRMZM5G885445 | 0.0357 |
GRMZM5G885445 | GRMZM2G020142 | 0.0415 |
GRMZM5G885445 | GRMZM2G025236 | 0.0387 |
GRMZM5G885445 | GRMZM2G085301 | 0.035 |
GRMZM5G885445 | GRMZM2G124377 | 0.0354 |