This page contains information for Module116, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G002483 | Module116 | ||||||
GRMZM2G019468 | Module116 | AT1G29150 | ATS9 | non-ATPase subunit 9 | non-ATPase subunit 9 | ||
GRMZM2G008175 | Module116 | AT4G38980 | AT4G38980 | ||||
GRMZM2G023438 | Module116 | AT1G09270 | IMPA-4 | importin alpha isoform 4 | importin alpha isoform 4 | ||
GRMZM2G009571 | Module116 | AT5G27710 | AT5G27710 | ||||
GRMZM2G038820 | Module116 | AT1G60860 | AGD2 | ARF-GAP domain 2 | ARF-GAP domain 2 | ||
GRMZM2G040902 | Module116 | AT1G51740 | SYP81 | syntaxin of plants 81 | syntaxin of plants 81 | ||
GRMZM2G007914 | Module116 | AT1G56080 | AT1G56080 | ||||
GRMZM2G090619 | Module116 | AT4G32930 | AT4G32930 | ||||
GRMZM2G018901 | Module116 | AT4G32930 | AT4G32930 | ||||
GRMZM2G094390 | Module116 | AT4G17890 | AGD8 | ARF-GAP domain 8 | ARF-GAP domain 8 | ||
GRMZM2G098656 | Module116 | ||||||
AC195860.3_FG005 | Module116 | AT1G69750 | COX19-2 | cytochrome c oxidase 19-2 | cytochrome c oxidase 19-2 | ||
GRMZM2G152955 | Module116 | AT5G55125 | AT5G55125 | Ribosomal protein L31 | |||
GRMZM2G019166 | Module116 | AT4G17960 | AT4G17960 | ||||
GRMZM2G159389 | Module116 | AT1G68310 | AE7 | AS1/2 ENHANCER7 | Protein of unknown function (DUF59) | ||
GRMZM2G340756 | mybr14 | Module116 | AT1G21700 | SWI3C | SWITCH/sucrose nonfermenting 3C | SWITCH/sucrose nonfermenting 3C | MYB-related |
GRMZM2G453388 | Module116 | AT5G24020 | MIND | septum site-determining protein (MIND) | |||
GRMZM2G525605 | Module116 | ||||||
GRMZM2G041633 | Module116 | AT5G13020 | EML3 | EMSY-like 3 | Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | ||
GRMZM5G872618 | Module116 | ||||||
GRMZM5G886109 | Module116 | ||||||
GRMZM6G287947 | Module116 | ||||||
GRMZM2G010357 | Module116 | AT5G59710 | VIP2 | VIRE2 interacting protein 2 | VIRE2 interacting protein 2 | ||
GRMZM2G056695 | Module116 | AT1G05520 | AT1G05520 | Sec23/Sec24 protein transport family protein | |||
GRMZM2G074531 | Module116 | AT2G15240 | AT2G15240 | UNC-50 family protein | |||
GRMZM2G101744 | Module116 | ||||||
GRMZM2G169412 | Module116 | AT5G06140 | SNX1 | sorting nexin 1 | sorting nexin 1 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module116 | 28 | 1 | GO:0016482 | biological_process | cytoplasmic transport | 0.000118854 | 3 | 177 |
Module116 | 28 | 2 | GO:1902582 | biological_process | single-organism intracellular transport | 0.000251388 | 3 | 228 |
Module116 | 28 | 3 | GO:0016192 | biological_process | vesicle-mediated transport | 0.000474569 | 3 | 283 |
Module116 | 28 | 4 | GO:0048193 | biological_process | Golgi vesicle transport | 0.000554546 | 2 | 61 |
Module116 | 28 | 5 | GO:0006886 | biological_process | intracellular protein transport | 0.0005575 | 3 | 299 |
Module116 | 28 | 6 | GO:0034613 | biological_process | cellular protein localization | 0.000679826 | 3 | 320 |
Module116 | 28 | 7 | GO:0070727 | biological_process | cellular macromolecule localization | 0.000797464 | 3 | 338 |
Module116 | 28 | 8 | GO:0015074 | biological_process | DNA integration | 0.001186988 | 1 | 2 |
Module116 | 28 | 9 | GO:0046907 | biological_process | intracellular transport | 0.001217626 | 3 | 391 |
Module116 | 28 | 10 | GO:0015031 | biological_process | protein transport | 0.00161365 | 3 | 431 |
Module116 | 28 | 11 | GO:0045184 | biological_process | establishment of protein localization | 0.001657224 | 3 | 435 |
Module116 | 28 | 12 | GO:0072594 | biological_process | establishment of protein localization to organelle | 0.00175836 | 2 | 109 |
Module116 | 28 | 13 | GO:0008104 | biological_process | protein localization | 0.001874426 | 3 | 454 |
Module116 | 28 | 14 | GO:0006605 | biological_process | protein targeting | 0.002022403 | 2 | 117 |
Module116 | 28 | 15 | GO:0033365 | biological_process | protein localization to organelle | 0.002126005 | 2 | 120 |
Module116 | 28 | 16 | GO:0051649 | biological_process | establishment of localization in cell | 0.002212949 | 3 | 481 |
Module116 | 28 | 17 | GO:1902580 | biological_process | single-organism cellular localization | 0.002720451 | 2 | 136 |
Module116 | 28 | 18 | GO:0051641 | biological_process | cellular localization | 0.002889889 | 3 | 528 |
Module116 | 28 | 19 | GO:0090529 | biological_process | cell septum assembly | 0.002965157 | 1 | 5 |
Module116 | 28 | 20 | GO:0000917 | biological_process | barrier septum assembly | 0.002965157 | 1 | 5 |
Module116 | 28 | 21 | GO:1902579 | biological_process | multi-organism localization | 0.002965157 | 1 | 5 |
Module116 | 28 | 22 | GO:0044766 | biological_process | multi-organism transport | 0.002965157 | 1 | 5 |
Module116 | 28 | 23 | GO:0033036 | biological_process | macromolecule localization | 0.00313036 | 3 | 543 |
Module116 | 28 | 24 | GO:0006892 | biological_process | post-Golgi vesicle-mediated transport | 0.004149064 | 1 | 7 |
Module116 | 28 | 25 | GO:0006896 | biological_process | Golgi to vacuole transport | 0.004149064 | 1 | 7 |
Module116 | 28 | 26 | GO:0010252 | biological_process | auxin homeostasis | 0.005922619 | 1 | 10 |
Module116 | 28 | 27 | GO:0071702 | biological_process | organic substance transport | 0.006866892 | 3 | 717 |
Module116 | 28 | 28 | GO:0030904 | cellular_component | retromer complex | 0.007652302 | 1 | 9 |
Module116 | 28 | 29 | GO:0010020 | biological_process | chloroplast fission | 0.007693408 | 1 | 13 |
Module116 | 28 | 30 | GO:0006606 | biological_process | protein import into nucleus | 0.007693408 | 1 | 13 |
Module116 | 28 | 31 | GO:1902593 | biological_process | single-organism nuclear import | 0.007693408 | 1 | 13 |
Module116 | 28 | 32 | GO:0009608 | biological_process | response to symbiont | 0.007693408 | 1 | 13 |
Module116 | 28 | 33 | GO:0044744 | biological_process | protein targeting to nucleus | 0.007693408 | 1 | 13 |
Module116 | 28 | 34 | GO:0043572 | biological_process | plastid fission | 0.008283058 | 1 | 14 |
Module116 | 28 | 35 | GO:0005515 | molecular_function | protein binding | 0.008657732 | 6 | 3991 |
Module116 | 28 | 36 | GO:0051170 | biological_process | nuclear import | 0.008872401 | 1 | 15 |
Module116 | 28 | 37 | GO:0034504 | biological_process | protein localization to nucleus | 0.008872401 | 1 | 15 |
Module116 | 28 | 38 | GO:0030127 | cellular_component | COPII vesicle coat | 0.010191477 | 1 | 12 |
Module116 | 28 | 39 | GO:0012507 | cellular_component | ER to Golgi transport vesicle membrane | 0.010191477 | 1 | 12 |
Module116 | 28 | 40 | GO:0005771 | cellular_component | multivesicular body | 0.011036584 | 1 | 13 |
Module116 | 28 | 41 | GO:0030134 | cellular_component | ER to Golgi transport vesicle | 0.01188105 | 1 | 14 |
Module116 | 28 | 42 | GO:0009958 | biological_process | positive gravitropism | 0.012402028 | 1 | 21 |
Module116 | 28 | 43 | GO:0051701 | biological_process | interaction with host | 0.013576124 | 1 | 23 |
Module116 | 28 | 44 | GO:0072665 | biological_process | protein localization to vacuole | 0.014162713 | 1 | 24 |
Module116 | 28 | 45 | GO:0072666 | biological_process | establishment of protein localization to vacuole | 0.014162713 | 1 | 24 |
Module116 | 28 | 46 | GO:0006623 | biological_process | protein targeting to vacuole | 0.014162713 | 1 | 24 |
Module116 | 28 | 47 | GO:0030658 | cellular_component | transport vesicle membrane | 0.015252508 | 1 | 18 |
Module116 | 28 | 48 | GO:0006888 | biological_process | ER to Golgi vesicle-mediated transport | 0.016506021 | 1 | 28 |
Module116 | 28 | 49 | GO:1902410 | biological_process | mitotic cytokinetic process | 0.017675846 | 1 | 30 |
Module116 | 28 | 50 | GO:0032506 | biological_process | cytokinetic process | 0.017675846 | 1 | 30 |
Module116 | 28 | 51 | GO:0006810 | biological_process | transport | 0.017785873 | 4 | 1919 |
Module116 | 28 | 52 | GO:0051234 | biological_process | establishment of localization | 0.018144925 | 4 | 1930 |
Module116 | 28 | 53 | GO:0051179 | biological_process | localization | 0.019733541 | 4 | 1977 |
Module116 | 28 | 54 | GO:0030133 | cellular_component | transport vesicle | 0.021127961 | 1 | 25 |
Module116 | 28 | 55 | GO:0035091 | molecular_function | phosphatidylinositol binding | 0.021738276 | 1 | 40 |
Module116 | 28 | 56 | GO:0007034 | biological_process | vacuolar transport | 0.021760652 | 1 | 37 |
Module116 | 28 | 57 | GO:0051169 | biological_process | nuclear transport | 0.022925006 | 1 | 39 |
Module116 | 28 | 58 | GO:0006913 | biological_process | nucleocytoplasmic transport | 0.022925006 | 1 | 39 |
Module116 | 28 | 59 | GO:0000281 | biological_process | mitotic cytokinesis | 0.024669263 | 1 | 42 |
Module116 | 28 | 60 | GO:0044403 | biological_process | symbiosis, encompassing mutualism through parasitism | 0.025830587 | 1 | 44 |
Module116 | 28 | 61 | GO:0061640 | biological_process | cytoskeleton-dependent cytokinesis | 0.025830587 | 1 | 44 |
Module116 | 28 | 62 | GO:0044419 | biological_process | interspecies interaction between organisms | 0.026990701 | 1 | 46 |
Module116 | 28 | 63 | GO:0009630 | biological_process | gravitropism | 0.028728605 | 1 | 49 |
Module116 | 28 | 64 | GO:0030120 | cellular_component | vesicle coat | 0.030297874 | 1 | 36 |
Module116 | 28 | 65 | GO:0030662 | cellular_component | coated vesicle membrane | 0.031127703 | 1 | 37 |
Module116 | 28 | 66 | GO:0017038 | biological_process | protein import | 0.032196267 | 1 | 55 |
Module116 | 28 | 67 | GO:0009629 | biological_process | response to gravity | 0.032196267 | 1 | 55 |
Module116 | 28 | 68 | GO:0030659 | cellular_component | cytoplasmic vesicle membrane | 0.032785469 | 1 | 39 |
Module116 | 28 | 69 | GO:0044433 | cellular_component | cytoplasmic vesicle part | 0.032785469 | 1 | 39 |
Module116 | 28 | 70 | GO:0008565 | molecular_function | protein transporter activity | 0.032981857 | 1 | 61 |
Module116 | 28 | 71 | GO:0012506 | cellular_component | vesicle membrane | 0.033613406 | 1 | 40 |
Module116 | 28 | 72 | GO:0009606 | biological_process | tropism | 0.033926032 | 1 | 58 |
Module116 | 28 | 73 | GO:0030135 | cellular_component | coated vesicle | 0.03774365 | 1 | 45 |
Module116 | 28 | 74 | GO:0000910 | biological_process | cytokinesis | 0.040245381 | 1 | 69 |
Module116 | 28 | 75 | GO:0042803 | molecular_function | protein homodimerization activity | 0.04252763 | 1 | 79 |
Module116 | 28 | 76 | GO:0044765 | biological_process | single-organism transport | 0.045018271 | 3 | 1438 |
Module116 | 28 | 77 | GO:1903047 | biological_process | mitotic cell cycle process | 0.045388825 | 1 | 78 |
Module116 | 28 | 78 | GO:0098796 | cellular_component | membrane protein complex | 0.046042475 | 2 | 414 |
Module116 | 28 | 79 | GO:1902578 | biological_process | single-organism localization | 0.047309186 | 3 | 1466 |
Module116 | 28 | 80 | GO:0009658 | biological_process | chloroplast organization | 0.047667048 | 1 | 82 |
Module116 | 28 | 81 | GO:0000278 | biological_process | mitotic cell cycle | 0.048235859 | 1 | 83 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G002483 | GRMZM6G287947 | 0.0405 |
GRMZM2G019468 | GRMZM2G008175 | 0.0383 |
GRMZM2G008175 | GRMZM5G886109 | 0.037 |
GRMZM2G023438 | GRMZM2G009571 | 0.0356 |
GRMZM2G009571 | GRMZM6G287947 | 0.0354 |
GRMZM2G038820 | GRMZM6G287947 | 0.0397 |
GRMZM2G040902 | GRMZM2G007914 | 0.0373 |
GRMZM2G040902 | GRMZM6G287947 | 0.0413 |
GRMZM2G090619 | GRMZM2G018901 | 0.0372 |
GRMZM2G090619 | GRMZM6G287947 | 0.0417 |
GRMZM2G098656 | AC195860.3_FG005 | 0.0404 |
GRMZM2G098656 | GRMZM5G872618 | 0.0434 |
AC195860.3_FG005 | GRMZM2G525605 | 0.0382 |
AC195860.3_FG005 | GRMZM6G287947 | 0.0497 |
GRMZM2G152955 | GRMZM2G019166 | 0.0477 |
GRMZM2G152955 | GRMZM6G287947 | 0.0404 |
GRMZM2G159389 | GRMZM6G287947 | 0.0489 |
mybr14 | GRMZM2G453388 | 0.0427 |
mybr14 | GRMZM6G287947 | 0.0411 |
GRMZM2G525605 | GRMZM2G041633 | 0.0393 |
GRMZM5G886109 | GRMZM6G287947 | 0.0522 |
GRMZM6G287947 | GRMZM2G010357 | 0.0433 |
GRMZM6G287947 | GRMZM2G056695 | 0.0356 |
GRMZM6G287947 | GRMZM2G074531 | 0.0509 |
GRMZM6G287947 | GRMZM2G101744 | 0.0482 |
GRMZM6G287947 | GRMZM2G169412 | 0.0374 |