This page contains information for Module119, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC197541.3_FG009 | Module119 | AT3G09410 | AT3G09410 | Pectinacetylesterase family protein | |||
GRMZM2G003411 | Module119 | AT1G15520 | ABCG40 | ATP-binding cassette G40 | pleiotropic drug resistance 12 | ||
GRMZM2G032682 | Module119 | AT1G09310 | AT1G09310 | Protein of unknown function, DUF538 | |||
GRMZM2G045031 | Module119 | AT1G09310 | AT1G09310 | Protein of unknown function, DUF538 | |||
GRMZM2G046733 | Module119 | AT1G09310 | AT1G09310 | Protein of unknown function, DUF538 | |||
GRMZM2G057093 | Module119 | ||||||
GRMZM2G063583 | Module119 | ||||||
GRMZM2G071436 | Module119 | AT1G09310 | AT1G09310 | Protein of unknown function, DUF538 | |||
GRMZM2G111132 | Module119 | AT5G53250 | AGP22 | arabinogalactan protein 22 | arabinogalactan protein 22 | ||
GRMZM2G112309 | Module119 | AT1G35710 | AT1G35710 | Protein kinase family protein with leucine-rich repeat domain | |||
GRMZM2G124276 | Module119 | AT1G69640 | SBH1 | sphingoid base hydroxylase 1 | sphingoid base hydroxylase 1 | ||
GRMZM2G129189 | epr4 | Module119 | AT3G54420 | EP3 | homolog of carrot EP3-3 chitinase | homolog of carrot EP3-3 chitinase | |
GRMZM2G134162 | Module119 | AT5G50860 | AT5G50860 | Protein kinase superfamily protein | |||
GRMZM2G162505 | Module119 | ||||||
GRMZM2G167431 | Module119 | AT3G06060 | TSC10A | TSC10A | NAD(P)-binding Rossmann-fold superfamily protein | ||
GRMZM2G173742 | Module119 | AT5G05350 | AT5G05350 | PLAC8 family protein | |||
GRMZM2G174128 | Module119 | AT1G47890 | RLP7 | receptor like protein 7 | receptor like protein 7 | ||
GRMZM2G011526 | Module119 | AT1G07650 | AT1G07650 | Leucine-rich repeat transmembrane protein kinase | |||
GRMZM2G334734 | Module119 | AT1G09310 | AT1G09310 | Protein of unknown function, DUF538 | |||
GRMZM2G340654 | Module119 | AT4G32300 | SD2-5 | S-domain-2 5 | S-domain-2 5 | ||
GRMZM2G355846 | Module119 | AT5G60710 | AT5G60710 | Zinc finger (C3HC4-type RING finger) family protein | |||
GRMZM2G378452 | si946003e12 | Module119 | AT4G00970 | CRK41 | cysteine-rich RLK (RECEPTOR-like protein kinase) 41 | cysteine-rich RLK (RECEPTOR-like protein kinase) 41 | |
GRMZM2G385236 | limtf3 | Module119 | AT1G10200 | WLIM1 | WLIM1 | GATA type zinc finger transcription factor family protein | LIM |
GRMZM2G433959 | Module119 | ||||||
GRMZM2G468747 | Module119 | AT1G09310 | AT1G09310 | Protein of unknown function, DUF538 | |||
GRMZM2G476597 | Module119 | AT2G45510 | CYP704A2 | cytochrome P450, family 704, subfamily A, polypeptide 2 | cytochrome P450, family 704, subfamily A, polypeptide 2 | ||
GRMZM6G177089 | Module119 | AT1G17240 | RLP2 | receptor like protein 2 | receptor like protein 2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module119 | 27 | 1 | GO:0030148 | biological_process | sphingolipid biosynthetic process | 5.48E-05 | 2 | 14 |
Module119 | 27 | 2 | GO:0006665 | biological_process | sphingolipid metabolic process | 0.000210268 | 2 | 27 |
Module119 | 27 | 3 | GO:0046467 | biological_process | membrane lipid biosynthetic process | 0.00069762 | 2 | 49 |
Module119 | 27 | 4 | GO:0006643 | biological_process | membrane lipid metabolic process | 0.001379339 | 2 | 69 |
Module119 | 27 | 5 | GO:0006468 | biological_process | protein phosphorylation | 0.001563205 | 5 | 1190 |
Module119 | 27 | 6 | GO:0000170 | molecular_function | sphingosine hydroxylase activity | 0.002923441 | 1 | 3 |
Module119 | 27 | 7 | GO:0004672 | molecular_function | protein kinase activity | 0.003802924 | 5 | 1149 |
Module119 | 27 | 8 | GO:0046520 | biological_process | sphingoid biosynthetic process | 0.004888517 | 1 | 6 |
Module119 | 27 | 9 | GO:0046519 | biological_process | sphingoid metabolic process | 0.004888517 | 1 | 6 |
Module119 | 27 | 10 | GO:0016310 | biological_process | phosphorylation | 0.004901205 | 5 | 1537 |
Module119 | 27 | 11 | GO:0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds | 0.005931566 | 3 | 390 |
Module119 | 27 | 12 | GO:0010262 | biological_process | somatic embryogenesis | 0.006513189 | 1 | 8 |
Module119 | 27 | 13 | GO:0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor | 0.007096281 | 5 | 1329 |
Module119 | 27 | 14 | GO:0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds | 0.007328926 | 3 | 421 |
Module119 | 27 | 15 | GO:0097367 | molecular_function | carbohydrate derivative binding | 0.007737321 | 7 | 2609 |
Module119 | 27 | 16 | GO:0004674 | molecular_function | protein serine/threonine kinase activity | 0.00816296 | 4 | 858 |
Module119 | 27 | 17 | GO:0036211 | biological_process | protein modification process | 0.008567159 | 5 | 1748 |
Module119 | 27 | 18 | GO:0006464 | biological_process | cellular protein modification process | 0.008567159 | 5 | 1748 |
Module119 | 27 | 19 | GO:0008061 | molecular_function | chitin binding | 0.008746301 | 1 | 9 |
Module119 | 27 | 20 | GO:0016301 | molecular_function | kinase activity | 0.010462137 | 5 | 1458 |
Module119 | 27 | 21 | GO:0043412 | biological_process | macromolecule modification | 0.011015373 | 5 | 1854 |
Module119 | 27 | 22 | GO:0006026 | biological_process | aminoglycan catabolic process | 0.01298779 | 1 | 16 |
Module119 | 27 | 23 | GO:0006030 | biological_process | chitin metabolic process | 0.01298779 | 1 | 16 |
Module119 | 27 | 24 | GO:0006032 | biological_process | chitin catabolic process | 0.01298779 | 1 | 16 |
Module119 | 27 | 25 | GO:1901072 | biological_process | glucosamine-containing compound catabolic process | 0.01298779 | 1 | 16 |
Module119 | 27 | 26 | GO:0046348 | biological_process | amino sugar catabolic process | 0.01298779 | 1 | 16 |
Module119 | 27 | 27 | GO:0044238 | biological_process | primary metabolic process | 0.013130276 | 10 | 7365 |
Module119 | 27 | 28 | GO:1901071 | biological_process | glucosamine-containing compound metabolic process | 0.013794412 | 1 | 17 |
Module119 | 27 | 29 | GO:0005524 | molecular_function | ATP binding | 0.01441593 | 6 | 2216 |
Module119 | 27 | 30 | GO:0006022 | biological_process | aminoglycan metabolic process | 0.014600435 | 1 | 18 |
Module119 | 27 | 31 | GO:0006796 | biological_process | phosphate-containing compound metabolic process | 0.014844634 | 5 | 1990 |
Module119 | 27 | 32 | GO:0006793 | biological_process | phosphorus metabolic process | 0.01522244 | 5 | 2002 |
Module119 | 27 | 33 | GO:0004568 | molecular_function | chitinase activity | 0.015499342 | 1 | 16 |
Module119 | 27 | 34 | GO:0032559 | molecular_function | adenyl ribonucleotide binding | 0.016555846 | 6 | 2282 |
Module119 | 27 | 35 | GO:0030554 | molecular_function | adenyl nucleotide binding | 0.016692502 | 6 | 2286 |
Module119 | 27 | 36 | GO:0016020 | cellular_component | membrane | 0.017802447 | 5 | 4716 |
Module119 | 27 | 37 | GO:0006040 | biological_process | amino sugar metabolic process | 0.019424009 | 1 | 24 |
Module119 | 27 | 38 | GO:0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups | 0.020500683 | 5 | 1720 |
Module119 | 27 | 39 | GO:0071704 | biological_process | organic substance metabolic process | 0.021880295 | 10 | 7797 |
Module119 | 27 | 40 | GO:0035639 | molecular_function | purine ribonucleoside triphosphate binding | 0.024253831 | 6 | 2478 |
Module119 | 27 | 41 | GO:0043167 | molecular_function | ion binding | 0.025390774 | 10 | 5827 |
Module119 | 27 | 42 | GO:1901136 | biological_process | carbohydrate derivative catabolic process | 0.026619131 | 1 | 33 |
Module119 | 27 | 43 | GO:0032550 | molecular_function | purine ribonucleoside binding | 0.027335097 | 6 | 2544 |
Module119 | 27 | 44 | GO:0032555 | molecular_function | purine ribonucleotide binding | 0.027335097 | 6 | 2544 |
Module119 | 27 | 45 | GO:0001883 | molecular_function | purine nucleoside binding | 0.027335097 | 6 | 2544 |
Module119 | 27 | 46 | GO:0032549 | molecular_function | ribonucleoside binding | 0.027677204 | 6 | 2551 |
Module119 | 27 | 47 | GO:0017076 | molecular_function | purine nucleotide binding | 0.02772632 | 6 | 2552 |
Module119 | 27 | 48 | GO:0001882 | molecular_function | nucleoside binding | 0.02772632 | 6 | 2552 |
Module119 | 27 | 49 | GO:0032553 | molecular_function | ribonucleotide binding | 0.029279279 | 6 | 2583 |
Module119 | 27 | 50 | GO:0016998 | biological_process | cell wall macromolecule catabolic process | 0.02980153 | 1 | 37 |
Module119 | 27 | 51 | GO:1901265 | molecular_function | nucleoside phosphate binding | 0.030478091 | 7 | 3369 |
Module119 | 27 | 52 | GO:0000166 | molecular_function | nucleotide binding | 0.030478091 | 7 | 3369 |
Module119 | 27 | 53 | GO:0008152 | biological_process | metabolic process | 0.030925342 | 11 | 9826 |
Module119 | 27 | 54 | GO:0004713 | molecular_function | protein tyrosine kinase activity | 0.031720454 | 1 | 33 |
Module119 | 27 | 55 | GO:0036094 | molecular_function | small molecule binding | 0.034440447 | 7 | 3451 |
Module119 | 27 | 56 | GO:0005975 | biological_process | carbohydrate metabolic process | 0.037997335 | 3 | 954 |
Module119 | 27 | 57 | GO:0008610 | biological_process | lipid biosynthetic process | 0.03847871 | 2 | 389 |
Module119 | 27 | 58 | GO:0031410 | cellular_component | cytoplasmic vesicle | 0.039636741 | 1 | 85 |
Module119 | 27 | 59 | GO:0016023 | cellular_component | cytoplasmic, membrane-bounded vesicle | 0.039636741 | 1 | 85 |
Module119 | 27 | 60 | GO:0031988 | cellular_component | membrane-bounded vesicle | 0.041012357 | 1 | 88 |
Module119 | 27 | 61 | GO:0005789 | cellular_component | endoplasmic reticulum membrane | 0.042844059 | 1 | 92 |
Module119 | 27 | 62 | GO:0042175 | cellular_component | nuclear outer membrane-endoplasmic reticulum membrane network | 0.043301546 | 1 | 93 |
Module119 | 27 | 63 | GO:0031982 | cellular_component | vesicle | 0.043758859 | 1 | 94 |
Module119 | 27 | 64 | GO:0044432 | cellular_component | endoplasmic reticulum part | 0.04786681 | 1 | 103 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC197541.3_FG009 | GRMZM2G334734 | 0.0585 |
GRMZM2G003411 | GRMZM2G032682 | 0.0855 |
GRMZM2G003411 | GRMZM2G045031 | 0.133 |
GRMZM2G003411 | GRMZM2G046733 | 0.0367 |
GRMZM2G003411 | GRMZM2G063583 | 0.0512 |
GRMZM2G003411 | GRMZM2G071436 | 0.1422 |
GRMZM2G003411 | GRMZM2G111132 | 0.04 |
GRMZM2G003411 | GRMZM2G124276 | 0.0554 |
GRMZM2G003411 | GRMZM2G134162 | 0.0376 |
GRMZM2G003411 | GRMZM2G167431 | 0.046 |
GRMZM2G003411 | GRMZM2G334734 | 0.0486 |
GRMZM2G003411 | GRMZM2G355846 | 0.0457 |
GRMZM2G003411 | GRMZM2G468747 | 0.0577 |
GRMZM2G032682 | GRMZM2G045031 | 0.1492 |
GRMZM2G032682 | GRMZM2G046733 | 0.1005 |
GRMZM2G032682 | GRMZM2G063583 | 0.1078 |
GRMZM2G032682 | GRMZM2G071436 | 0.1373 |
GRMZM2G032682 | GRMZM2G174128 | 0.052 |
GRMZM2G032682 | GRMZM2G334734 | 0.0977 |
GRMZM2G032682 | GRMZM2G340654 | 0.0573 |
GRMZM2G032682 | GRMZM2G355846 | 0.0382 |
GRMZM2G032682 | limtf3 | 0.0421 |
GRMZM2G032682 | GRMZM2G468747 | 0.2765 |
GRMZM2G032682 | GRMZM2G476597 | 0.043 |
GRMZM2G045031 | GRMZM2G057093 | 0.058 |
GRMZM2G045031 | GRMZM2G063583 | 0.1198 |
GRMZM2G045031 | GRMZM2G071436 | 0.2463 |
GRMZM2G045031 | GRMZM2G111132 | 0.0365 |
GRMZM2G045031 | GRMZM2G124276 | 0.0441 |
GRMZM2G045031 | epr4 | 0.0397 |
GRMZM2G045031 | GRMZM2G134162 | 0.0718 |
GRMZM2G045031 | GRMZM2G162505 | 0.075 |
GRMZM2G045031 | GRMZM2G174128 | 0.0578 |
GRMZM2G045031 | GRMZM2G334734 | 0.0987 |
GRMZM2G045031 | GRMZM2G340654 | 0.0355 |
GRMZM2G045031 | GRMZM2G468747 | 0.1431 |
GRMZM2G046733 | GRMZM2G071436 | 0.0579 |
GRMZM2G046733 | GRMZM2G173742 | 0.0403 |
GRMZM2G046733 | GRMZM2G334734 | 0.0613 |
GRMZM2G046733 | GRMZM2G468747 | 0.1184 |
GRMZM2G057093 | GRMZM2G071436 | 0.0441 |
GRMZM2G057093 | GRMZM2G162505 | 0.0671 |
GRMZM2G057093 | GRMZM2G174128 | 0.0443 |
GRMZM2G057093 | GRMZM2G334734 | 0.0453 |
GRMZM2G063583 | GRMZM2G071436 | 0.093 |
GRMZM2G063583 | GRMZM2G173742 | 0.0367 |
GRMZM2G063583 | GRMZM2G174128 | 0.0425 |
GRMZM2G071436 | GRMZM2G162505 | 0.0354 |
GRMZM2G071436 | GRMZM2G173742 | 0.0358 |
GRMZM2G071436 | GRMZM2G334734 | 0.0978 |
GRMZM2G071436 | GRMZM2G468747 | 0.13 |
GRMZM2G112309 | GRMZM2G334734 | 0.0409 |
GRMZM2G112309 | GRMZM2G340654 | 0.0364 |
epr4 | GRMZM2G162505 | 0.0407 |
GRMZM2G134162 | GRMZM2G334734 | 0.0469 |
GRMZM2G134162 | GRMZM2G433959 | 0.0472 |
GRMZM2G134162 | GRMZM6G177089 | 0.0444 |
GRMZM2G167431 | si946003e12 | 0.0403 |
GRMZM2G174128 | GRMZM2G011526 | 0.0383 |
GRMZM2G334734 | GRMZM2G340654 | 0.049 |
GRMZM2G334734 | GRMZM2G468747 | 0.1506 |
GRMZM2G334734 | GRMZM6G177089 | 0.0536 |
GRMZM2G340654 | GRMZM6G177089 | 0.054 |