This page contains information for Module120, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC199526.5_FG001 | Module120 | ||||||
AC233883.1_FG001 | Module120 | ||||||
GRMZM2G017847 | Module120 | AT2G37620 | ACT1 | actin 1 | actin 1 | ||
GRMZM2G023254 | Module120 | AT5G43430 | ETFBETA | electron transfer flavoprotein beta | electron transfer flavoprotein beta | ||
GRMZM2G046286 | Module120 | AT2G35605 | AT2G35605 | SWIB/MDM2 domain superfamily protein | SWI/SNF-BAF60b | ||
GRMZM2G025302 | Module120 | AT1G17280 | UBC34 | ubiquitin-conjugating enzyme 34 | ubiquitin-conjugating enzyme 34 | ||
GRMZM2G029956 | Module120 | ||||||
GRMZM2G045039 | Module120 | AT1G17280 | UBC34 | ubiquitin-conjugating enzyme 34 | ubiquitin-conjugating enzyme 34 | ||
GRMZM2G054987 | Module120 | ||||||
GRMZM2G065884 | Module120 | ||||||
GRMZM2G076747 | Module120 | ||||||
GRMZM2G098796 | Module120 | ||||||
GRMZM2G147481 | Module120 | AT5G64970 | AT5G64970 | Mitochondrial substrate carrier family protein | |||
GRMZM2G178365 | Module120 | AT4G31400 | CTF7 | damaged DNA binding;DNA-directed DNA polymerases | |||
GRMZM2G075145 | Module120 | AT4G31400 | CTF7 | damaged DNA binding;DNA-directed DNA polymerases | |||
GRMZM2G301961 | Module120 | ||||||
GRMZM2G330422 | Module120 | AT5G43810 | AGO10 | ARGONAUTE 10 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | ||
GRMZM2G344039 | Module120 | AT5G58420 | AT5G58420 | Ribosomal protein S4 (RPS4A) family protein | |||
GRMZM2G409205 | Module120 | ||||||
GRMZM2G422367 | Module120 | ||||||
GRMZM2G453855 | Module120 | AT1G17280 | UBC34 | ubiquitin-conjugating enzyme 34 | ubiquitin-conjugating enzyme 34 | ||
GRMZM2G701359 | Module120 | ||||||
GRMZM2G088539 | Module120 | AT2G17975 | AT2G17975 | zinc finger (Ran-binding) family protein | |||
GRMZM5G807213 | Module120 | ||||||
GRMZM5G835418 | Module120 | ||||||
GRMZM5G859148 | Module120 | AT2G35605 | AT2G35605 | SWIB/MDM2 domain superfamily protein | SWI/SNF-BAF60b | ||
GRMZM5G873779 | Module120 | AT1G63900 | DAL1 | DIAP1-like protein 1 | E3 Ubiquitin ligase family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module120 | 27 | 1 | GO:0060771 | biological_process | phyllotactic patterning | 0.000593582 | 1 | 2 |
Module120 | 27 | 2 | GO:0060772 | biological_process | leaf phyllotactic patterning | 0.000593582 | 1 | 2 |
Module120 | 27 | 3 | GO:0051177 | biological_process | meiotic sister chromatid cohesion | 0.001483459 | 1 | 5 |
Module120 | 27 | 4 | GO:0045144 | biological_process | meiotic sister chromatid segregation | 0.001483459 | 1 | 5 |
Module120 | 27 | 5 | GO:0007135 | biological_process | meiosis II | 0.001483459 | 1 | 5 |
Module120 | 27 | 6 | GO:0006552 | biological_process | leucine catabolic process | 0.001483459 | 1 | 5 |
Module120 | 27 | 7 | GO:0009083 | biological_process | branched-chain amino acid catabolic process | 0.00207638 | 1 | 7 |
Module120 | 27 | 8 | GO:0009956 | biological_process | radial pattern formation | 0.002965267 | 1 | 10 |
Module120 | 27 | 9 | GO:0006551 | biological_process | leucine metabolic process | 0.003557528 | 1 | 12 |
Module120 | 27 | 10 | GO:0007062 | biological_process | sister chromatid cohesion | 0.00385356 | 1 | 13 |
Module120 | 27 | 11 | GO:0000070 | biological_process | mitotic sister chromatid segregation | 0.00385356 | 1 | 13 |
Module120 | 27 | 12 | GO:0070192 | biological_process | chromosome organization involved in meiotic cell cycle | 0.004741259 | 1 | 16 |
Module120 | 27 | 13 | GO:0015996 | biological_process | chlorophyll catabolic process | 0.005037027 | 1 | 17 |
Module120 | 27 | 14 | GO:0046149 | biological_process | pigment catabolic process | 0.005332729 | 1 | 18 |
Module120 | 27 | 15 | GO:0051187 | biological_process | cofactor catabolic process | 0.005923935 | 1 | 20 |
Module120 | 27 | 16 | GO:0033015 | biological_process | tetrapyrrole catabolic process | 0.005923935 | 1 | 20 |
Module120 | 27 | 17 | GO:0000724 | biological_process | double-strand break repair via homologous recombination | 0.005923935 | 1 | 20 |
Module120 | 27 | 18 | GO:0000725 | biological_process | recombinational repair | 0.005923935 | 1 | 20 |
Module120 | 27 | 19 | GO:0006787 | biological_process | porphyrin-containing compound catabolic process | 0.005923935 | 1 | 20 |
Module120 | 27 | 20 | GO:0045132 | biological_process | meiotic chromosome segregation | 0.006514878 | 1 | 22 |
Module120 | 27 | 21 | GO:0000819 | biological_process | sister chromatid segregation | 0.007105556 | 1 | 24 |
Module120 | 27 | 22 | GO:0048653 | biological_process | anther development | 0.008286124 | 1 | 28 |
Module120 | 27 | 23 | GO:0015018 | molecular_function | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | 0.009109065 | 1 | 15 |
Module120 | 27 | 24 | GO:0007067 | biological_process | mitotic nuclear division | 0.009170859 | 1 | 31 |
Module120 | 27 | 25 | GO:0006302 | biological_process | double-strand break repair | 0.009465639 | 1 | 32 |
Module120 | 27 | 26 | GO:0009081 | biological_process | branched-chain amino acid metabolic process | 0.010938552 | 1 | 37 |
Module120 | 27 | 27 | GO:0098813 | biological_process | nuclear chromosome segregation | 0.011821511 | 1 | 40 |
Module120 | 27 | 28 | GO:0007059 | biological_process | chromosome segregation | 0.012409822 | 1 | 42 |
Module120 | 27 | 29 | GO:0007126 | biological_process | meiotic nuclear division | 0.013291796 | 1 | 45 |
Module120 | 27 | 30 | GO:1903046 | biological_process | meiotic cell cycle process | 0.01387945 | 1 | 47 |
Module120 | 27 | 31 | GO:0015994 | biological_process | chlorophyll metabolic process | 0.01387945 | 1 | 47 |
Module120 | 27 | 32 | GO:0015020 | molecular_function | glucuronosyltransferase activity | 0.013936635 | 1 | 23 |
Module120 | 27 | 33 | GO:1901606 | biological_process | alpha-amino acid catabolic process | 0.014466842 | 1 | 49 |
Module120 | 27 | 34 | GO:0009063 | biological_process | cellular amino acid catabolic process | 0.015347437 | 1 | 52 |
Module120 | 27 | 35 | GO:0048466 | biological_process | androecium development | 0.015347437 | 1 | 52 |
Module120 | 27 | 36 | GO:0048443 | biological_process | stamen development | 0.015347437 | 1 | 52 |
Module120 | 27 | 37 | GO:0051321 | biological_process | meiotic cell cycle | 0.015934173 | 1 | 54 |
Module120 | 27 | 38 | GO:0006310 | biological_process | DNA recombination | 0.019449083 | 1 | 66 |
Module120 | 27 | 39 | GO:0046700 | biological_process | heterocycle catabolic process | 0.020326337 | 1 | 69 |
Module120 | 27 | 40 | GO:0044270 | biological_process | cellular nitrogen compound catabolic process | 0.020618624 | 1 | 70 |
Module120 | 27 | 41 | GO:0006778 | biological_process | porphyrin-containing compound metabolic process | 0.021787119 | 1 | 74 |
Module120 | 27 | 42 | GO:0000280 | biological_process | nuclear division | 0.022662804 | 1 | 77 |
Module120 | 27 | 43 | GO:1903047 | biological_process | mitotic cell cycle process | 0.022954568 | 1 | 78 |
Module120 | 27 | 44 | GO:0033013 | biological_process | tetrapyrrole metabolic process | 0.023246267 | 1 | 79 |
Module120 | 27 | 45 | GO:0000278 | biological_process | mitotic cell cycle | 0.024412409 | 1 | 83 |
Module120 | 27 | 46 | GO:0016054 | biological_process | organic acid catabolic process | 0.024703782 | 1 | 84 |
Module120 | 27 | 47 | GO:0046395 | biological_process | carboxylic acid catabolic process | 0.024703782 | 1 | 84 |
Module120 | 27 | 48 | GO:0019439 | biological_process | aromatic compound catabolic process | 0.025286331 | 1 | 86 |
Module120 | 27 | 49 | GO:0009553 | biological_process | embryo sac development | 0.026450646 | 1 | 90 |
Module120 | 27 | 50 | GO:1901361 | biological_process | organic cyclic compound catabolic process | 0.027613917 | 1 | 94 |
Module120 | 27 | 51 | GO:0048285 | biological_process | organelle fission | 0.029937333 | 1 | 102 |
Module120 | 27 | 52 | GO:0044282 | biological_process | small molecule catabolic process | 0.03167716 | 1 | 108 |
Module120 | 27 | 53 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 0.033125227 | 1 | 113 |
Module120 | 27 | 54 | GO:0003002 | biological_process | regionalization | 0.033125227 | 1 | 113 |
Module120 | 27 | 55 | GO:0048438 | biological_process | floral whorl development | 0.033125227 | 1 | 113 |
Module120 | 27 | 56 | GO:0042440 | biological_process | pigment metabolic process | 0.035727655 | 1 | 122 |
Module120 | 27 | 57 | GO:0007389 | biological_process | pattern specification process | 0.037748131 | 1 | 129 |
Module120 | 27 | 58 | GO:0016407 | molecular_function | acetyltransferase activity | 0.037758466 | 1 | 63 |
Module120 | 27 | 59 | GO:0048437 | biological_process | floral organ development | 0.038036511 | 1 | 130 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC199526.5_FG001 | AC233883.1_FG001 | 0.0998 |
AC199526.5_FG001 | GRMZM2G017847 | 0.0361 |
AC199526.5_FG001 | GRMZM5G807213 | 0.0535 |
AC233883.1_FG001 | GRMZM2G017847 | 0.0697 |
AC233883.1_FG001 | GRMZM2G046286 | 0.0359 |
AC233883.1_FG001 | GRMZM2G422367 | 0.0507 |
AC233883.1_FG001 | GRMZM5G807213 | 0.0708 |
GRMZM2G017847 | GRMZM2G023254 | 0.0434 |
GRMZM2G017847 | GRMZM2G046286 | 0.0406 |
GRMZM2G017847 | GRMZM2G098796 | 0.043 |
GRMZM2G017847 | GRMZM5G807213 | 0.0595 |
GRMZM2G017847 | GRMZM5G859148 | 0.0423 |
GRMZM2G023254 | GRMZM2G046286 | 0.0556 |
GRMZM2G023254 | GRMZM2G065884 | 0.04 |
GRMZM2G023254 | GRMZM2G098796 | 0.0421 |
GRMZM2G023254 | GRMZM2G147481 | 0.0442 |
GRMZM2G023254 | GRMZM2G178365 | 0.0392 |
GRMZM2G023254 | GRMZM2G453855 | 0.0381 |
GRMZM2G023254 | GRMZM5G807213 | 0.0439 |
GRMZM2G023254 | GRMZM5G859148 | 0.0514 |
GRMZM2G046286 | GRMZM2G025302 | 0.0381 |
GRMZM2G046286 | GRMZM2G029956 | 0.0528 |
GRMZM2G046286 | GRMZM2G045039 | 0.0413 |
GRMZM2G046286 | GRMZM2G076747 | 0.0358 |
GRMZM2G046286 | GRMZM2G098796 | 0.048 |
GRMZM2G046286 | GRMZM2G422367 | 0.0825 |
GRMZM2G046286 | GRMZM2G453855 | 0.0372 |
GRMZM2G046286 | GRMZM2G701359 | 0.0452 |
GRMZM2G046286 | GRMZM5G807213 | 0.0669 |
GRMZM2G046286 | GRMZM5G835418 | 0.0369 |
GRMZM2G046286 | GRMZM5G859148 | 0.1516 |
GRMZM2G046286 | GRMZM5G873779 | 0.046 |
GRMZM2G025302 | GRMZM2G453855 | 0.0398 |
GRMZM2G025302 | GRMZM5G859148 | 0.0412 |
GRMZM2G029956 | GRMZM2G301961 | 0.0483 |
GRMZM2G029956 | GRMZM5G859148 | 0.0376 |
GRMZM2G054987 | GRMZM2G330422 | 0.0437 |
GRMZM2G054987 | GRMZM2G409205 | 0.0538 |
GRMZM2G054987 | GRMZM5G859148 | 0.0427 |
GRMZM2G065884 | GRMZM2G178365 | 0.0356 |
GRMZM2G178365 | GRMZM2G075145 | 0.0388 |
GRMZM2G301961 | GRMZM2G422367 | 0.0375 |
GRMZM2G344039 | GRMZM2G422367 | 0.0354 |
GRMZM2G344039 | GRMZM5G835418 | 0.0361 |
GRMZM2G409205 | GRMZM2G453855 | 0.0379 |
GRMZM2G409205 | GRMZM5G859148 | 0.058 |
GRMZM2G422367 | GRMZM5G859148 | 0.0382 |
GRMZM2G453855 | GRMZM5G859148 | 0.0407 |
GRMZM2G701359 | GRMZM2G088539 | 0.035 |
GRMZM5G807213 | GRMZM5G859148 | 0.0391 |