This page contains information for Module121, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC233943.1_FG002 | ra2 | Module121 | AT5G63090 | LOB | LATERAL ORGAN BOUNDARIES | Lateral organ boundaries (LOB) domain family protein | LOB |
GRMZM2G027522 | mac1 | Module121 | AT1G32583 | AT1G32583 | |||
AC209739.3_FG003 | Module121 | AT3G16510 | AT3G16510 | Calcium-dependent lipid-binding (CaLB domain) family protein | |||
GRMZM2G035688 | abph1 | Module121 | AT1G10470 | ARR4 | response regulator 4 | response regulator 4 | Orphans |
GRMZM2G046313 | Module121 | AT3G26120 | TEL1 | terminal EAR1-like 1 | terminal EAR1-like 1 | ||
GRMZM2G061758 | Module121 | AT5G37930 | AT5G37930 | Protein with RING/U-box and TRAF-like domains | |||
GRMZM2G139700 | nactf84 | Module121 | AT5G53950 | CUC2 | CUP-SHAPED COTYLEDON 2 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | NAC |
GRMZM2G052696 | Module121 | ||||||
GRMZM2G148937 | bige1 | Module121 | AT1G71870 | AT1G71870 | MATE efflux family protein | ||
GRMZM2G150827 | Module121 | AT1G60500 | DRP4C | Dynamin related protein 4C | Dynamin related protein 4C | ||
GRMZM2G167986 | cyp8 | Module121 | AT5G09970 | CYP78A7 | cytochrome P450, family 78, subfamily A, polypeptide 7 | cytochrome P450, family 78, subfamily A, polypeptide 7 | |
GRMZM2G171822 | bif2 | Module121 | AT2G34650 | PID | PINOID | Protein kinase superfamily protein | |
GRMZM2G179021 | srs8 | Module121 | AT3G51060 | STY1 | STYLISH 1 | Lateral root primordium (LRP) protein-related | SRS |
GRMZM2G318296 | Module121 | AT1G08050 | AT1G08050 | Zinc finger (C3HC4-type RING finger) family protein | |||
GRMZM2G325850 | tsh1 | Module121 | AT4G36620 | GATA19 | GATA transcription factor 19 | GATA transcription factor 19 | C2C2-GATA |
GRMZM2G351027 | Module121 | AT3G26120 | TEL1 | terminal EAR1-like 1 | terminal EAR1-like 1 | ||
GRMZM2G353734 | zhd7 | Module121 | AT5G39760 | HB23 | homeobox protein 23 | homeobox protein 23 | zf-HD |
GRMZM2G393433 | nactf119 | Module121 | AT5G53950 | CUC2 | CUP-SHAPED COTYLEDON 2 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | NAC |
GRMZM2G397616 | gata26 | Module121 | AT3G50870 | MNP | MONOPOLE | GATA type zinc finger transcription factor family protein | C2C2-GATA |
GRMZM2G409881 | wox9c | Module121 | AT2G33880 | HB-3 | homeobox-3 | homeobox-3 | HB |
GRMZM2G702204 | Module121 | ||||||
GRMZM5G801939 | Module121 | ||||||
GRMZM5G803935 | ts4 | Module121 | |||||
GRMZM5G845891 | Module121 | ||||||
GRMZM5G887055 | Module121 | ||||||
GRMZM5G894369 | Module121 | ||||||
zma-MIR164a | Module121 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module121 | 27 | 1 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.000233062 | 6 | 1293 |
Module121 | 27 | 2 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.000233062 | 6 | 1293 |
Module121 | 27 | 3 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.000233062 | 6 | 1293 |
Module121 | 27 | 4 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.000244312 | 6 | 1304 |
Module121 | 27 | 5 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.000276079 | 6 | 1333 |
Module121 | 27 | 6 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.00032657 | 6 | 1374 |
Module121 | 27 | 7 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.00032657 | 6 | 1374 |
Module121 | 27 | 8 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.000372371 | 6 | 1407 |
Module121 | 27 | 9 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.000375304 | 6 | 1409 |
Module121 | 27 | 10 | GO:0010468 | biological_process | regulation of gene expression | 0.000382718 | 6 | 1414 |
Module121 | 27 | 11 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.000382718 | 6 | 1414 |
Module121 | 27 | 12 | GO:0006351 | biological_process | transcription, DNA-templated | 0.000382718 | 6 | 1414 |
Module121 | 27 | 13 | GO:0032774 | biological_process | RNA biosynthetic process | 0.000390248 | 6 | 1419 |
Module121 | 27 | 14 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.000394823 | 6 | 1422 |
Module121 | 27 | 15 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.000584123 | 6 | 1527 |
Module121 | 27 | 16 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.000594674 | 6 | 1532 |
Module121 | 27 | 17 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.000642921 | 6 | 1554 |
Module121 | 27 | 18 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.000751319 | 6 | 1599 |
Module121 | 27 | 19 | GO:0050794 | biological_process | regulation of cellular process | 0.000903937 | 7 | 2381 |
Module121 | 27 | 20 | GO:0019222 | biological_process | regulation of metabolic process | 0.001267346 | 6 | 1761 |
Module121 | 27 | 21 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.001442879 | 6 | 1804 |
Module121 | 27 | 22 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.001499554 | 6 | 1817 |
Module121 | 27 | 23 | GO:0016070 | biological_process | RNA metabolic process | 0.001670513 | 6 | 1854 |
Module121 | 27 | 24 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.002035664 | 6 | 1924 |
Module121 | 27 | 25 | GO:0050789 | biological_process | regulation of biological process | 0.002219581 | 7 | 2751 |
Module121 | 27 | 26 | GO:0065007 | biological_process | biological regulation | 0.003236541 | 7 | 2926 |
Module121 | 27 | 27 | GO:0010199 | biological_process | organ boundary specification between lateral organs and the meristem | 0.003261431 | 1 | 4 |
Module121 | 27 | 28 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.003978611 | 6 | 2185 |
Module121 | 27 | 29 | GO:0010160 | biological_process | formation of organ boundary | 0.004075276 | 1 | 5 |
Module121 | 27 | 30 | GO:0048859 | biological_process | formation of anatomical boundary | 0.004075276 | 1 | 5 |
Module121 | 27 | 31 | GO:0003677 | molecular_function | DNA binding | 0.004627492 | 6 | 1891 |
Module121 | 27 | 32 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.007752956 | 3 | 460 |
Module121 | 27 | 33 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.008072012 | 6 | 2507 |
Module121 | 27 | 34 | GO:0010467 | biological_process | gene expression | 0.008154044 | 6 | 2512 |
Module121 | 27 | 35 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.008387108 | 6 | 2526 |
Module121 | 27 | 36 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.008420812 | 6 | 2528 |
Module121 | 27 | 37 | GO:0051781 | biological_process | positive regulation of cell division | 0.008945675 | 1 | 11 |
Module121 | 27 | 38 | GO:0048645 | biological_process | organ formation | 0.008945675 | 1 | 11 |
Module121 | 27 | 39 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.00964794 | 6 | 2597 |
Module121 | 27 | 40 | GO:0003676 | molecular_function | nucleic acid binding | 0.013652396 | 7 | 3117 |
Module121 | 27 | 41 | GO:0046483 | biological_process | heterocycle metabolic process | 0.015758723 | 6 | 2866 |
Module121 | 27 | 42 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.01695349 | 6 | 2909 |
Module121 | 27 | 43 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.017065752 | 8 | 4961 |
Module121 | 27 | 44 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.01966964 | 6 | 2999 |
Module121 | 27 | 45 | GO:0010075 | biological_process | regulation of meristem growth | 0.020225847 | 1 | 25 |
Module121 | 27 | 46 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.022487199 | 3 | 683 |
Module121 | 27 | 47 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.022573791 | 3 | 684 |
Module121 | 27 | 48 | GO:0010229 | biological_process | inflorescence development | 0.025024376 | 1 | 31 |
Module121 | 27 | 49 | GO:0035266 | biological_process | meristem growth | 0.027415619 | 1 | 34 |
Module121 | 27 | 50 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.03000946 | 10 | 6456 |
Module121 | 27 | 51 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.030179718 | 10 | 6461 |
Module121 | 27 | 52 | GO:0043170 | biological_process | macromolecule metabolic process | 0.032538958 | 8 | 5482 |
Module121 | 27 | 53 | GO:0051302 | biological_process | regulation of cell division | 0.034557396 | 1 | 43 |
Module121 | 27 | 54 | GO:0006855 | biological_process | drug transmembrane transport | 0.036137968 | 1 | 45 |
Module121 | 27 | 55 | GO:0015893 | biological_process | drug transport | 0.036927372 | 1 | 46 |
Module121 | 27 | 56 | GO:0042493 | biological_process | response to drug | 0.037716188 | 1 | 47 |
Module121 | 27 | 57 | GO:0048638 | biological_process | regulation of developmental growth | 0.037716188 | 1 | 47 |
Module121 | 27 | 58 | GO:0000156 | molecular_function | phosphorelay response regulator activity | 0.042143604 | 1 | 47 |
Module121 | 27 | 59 | GO:0015238 | molecular_function | drug transmembrane transporter activity | 0.043021995 | 1 | 48 |
Module121 | 27 | 60 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.043401783 | 6 | 3545 |
Module121 | 27 | 61 | GO:0044249 | biological_process | cellular biosynthetic process | 0.043458089 | 6 | 3546 |
Module121 | 27 | 62 | GO:0090484 | molecular_function | drug transporter activity | 0.044776523 | 1 | 50 |
Module121 | 27 | 63 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.046930778 | 6 | 3606 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
ra2 | nactf84 | 0.0368 |
ra2 | gata26 | 0.0413 |
ra2 | GRMZM5G894369 | 0.0421 |
mac1 | AC209739.3_FG003 | 0.0475 |
mac1 | GRMZM2G046313 | 0.0677 |
mac1 | GRMZM2G150827 | 0.0745 |
mac1 | GRMZM2G318296 | 0.039 |
mac1 | GRMZM2G351027 | 0.0782 |
mac1 | gata26 | 0.0539 |
abph1 | nactf84 | 0.0507 |
abph1 | GRMZM2G150827 | 0.0562 |
abph1 | bif2 | 0.039 |
abph1 | GRMZM2G351027 | 0.0363 |
abph1 | gata26 | 0.0392 |
abph1 | wox9c | 0.0356 |
abph1 | GRMZM2G702204 | 0.0515 |
GRMZM2G046313 | nactf84 | 0.0505 |
GRMZM2G046313 | GRMZM2G150827 | 0.0363 |
GRMZM2G046313 | cyp8 | 0.0384 |
GRMZM2G046313 | bif2 | 0.0514 |
GRMZM2G046313 | srs8 | 0.0518 |
GRMZM2G046313 | tsh1 | 0.0667 |
GRMZM2G046313 | GRMZM2G351027 | 0.0971 |
GRMZM2G046313 | zhd7 | 0.038 |
GRMZM2G046313 | nactf119 | 0.039 |
GRMZM2G046313 | gata26 | 0.0681 |
GRMZM2G046313 | wox9c | 0.0485 |
GRMZM2G046313 | GRMZM2G702204 | 0.0548 |
GRMZM2G046313 | GRMZM5G801939 | 0.0658 |
GRMZM2G046313 | ts4 | 0.0378 |
GRMZM2G046313 | GRMZM5G845891 | 0.0381 |
GRMZM2G061758 | GRMZM5G801939 | 0.0563 |
nactf84 | GRMZM2G052696 | 0.0533 |
nactf84 | GRMZM2G150827 | 0.0507 |
nactf84 | bif2 | 0.037 |
nactf84 | GRMZM2G318296 | 0.0659 |
nactf84 | tsh1 | 0.0414 |
nactf84 | GRMZM2G351027 | 0.0485 |
nactf84 | nactf119 | 0.0692 |
nactf84 | gata26 | 0.0545 |
nactf84 | wox9c | 0.0386 |
nactf84 | GRMZM5G801939 | 0.0547 |
nactf84 | ts4 | 0.037 |
GRMZM2G052696 | GRMZM2G150827 | 0.0446 |
GRMZM2G052696 | bif2 | 0.0463 |
GRMZM2G052696 | GRMZM2G318296 | 0.0428 |
GRMZM2G052696 | GRMZM2G351027 | 0.035 |
GRMZM2G052696 | gata26 | 0.0507 |
bige1 | bif2 | 0.0626 |
GRMZM2G150827 | GRMZM2G318296 | 0.0695 |
GRMZM2G150827 | GRMZM2G351027 | 0.0686 |
GRMZM2G150827 | gata26 | 0.0402 |
cyp8 | tsh1 | 0.0396 |
cyp8 | nactf119 | 0.0358 |
cyp8 | gata26 | 0.0435 |
cyp8 | ts4 | 0.0491 |
bif2 | GRMZM2G351027 | 0.0509 |
bif2 | gata26 | 0.0429 |
srs8 | tsh1 | 0.0424 |
srs8 | GRMZM2G351027 | 0.0552 |
srs8 | zhd7 | 0.0415 |
srs8 | gata26 | 0.0817 |
srs8 | ts4 | 0.0402 |
GRMZM2G318296 | GRMZM2G351027 | 0.0532 |
GRMZM2G318296 | nactf119 | 0.0393 |
tsh1 | GRMZM2G351027 | 0.061 |
tsh1 | gata26 | 0.0719 |
tsh1 | wox9c | 0.0361 |
GRMZM2G351027 | nactf119 | 0.0361 |
GRMZM2G351027 | gata26 | 0.077 |
GRMZM2G351027 | wox9c | 0.0469 |
zhd7 | gata26 | 0.0403 |
nactf119 | ts4 | 0.0446 |
gata26 | wox9c | 0.0432 |
gata26 | GRMZM5G894369 | 0.0557 |
GRMZM2G702204 | GRMZM5G801939 | 0.1018 |
GRMZM2G702204 | ts4 | 0.0592 |
GRMZM2G702204 | GRMZM5G845891 | 0.0496 |
GRMZM2G702204 | GRMZM5G887055 | 0.0603 |
GRMZM2G702204 | GRMZM5G894369 | 0.0414 |
GRMZM5G801939 | ts4 | 0.0421 |
GRMZM5G801939 | GRMZM5G845891 | 0.1 |
GRMZM5G801939 | GRMZM5G894369 | 0.0611 |
ts4 | GRMZM5G845891 | 0.052 |
ts4 | GRMZM5G894369 | 0.1126 |
GRMZM5G887055 | GRMZM5G894369 | 0.0869 |
GRMZM5G894369 | zma-MIR164a | 0.0536 |