This page contains information for Module123, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G005996 | Module123 | AT3G14810 | MSL5 | mechanosensitive channel of small conductance-like 5 | mechanosensitive channel of small conductance-like 5 | ||
GRMZM2G028286 | Module123 | AT4G07960 | CSLC12 | Cellulose-synthase-like C12 | Cellulose-synthase-like C12 | ||
GRMZM2G032484 | Module123 | AT4G18070 | AT4G18070 | ||||
GRMZM2G017386 | Module123 | AT3G59110 | AT3G59110 | Protein kinase superfamily protein | |||
GRMZM2G050803 | Module123 | AT1G57680 | Cand1 | candidate G-protein Coupled Receptor 1 | |||
GRMZM2G005939 | Module123 | AT2G31730 | AT2G31730 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | |||
GRMZM2G072669 | Module123 | AT4G37080 | AT4G37080 | Protein of unknown function, DUF547 | |||
GRMZM2G089596 | Module123 | AT2G31730 | AT2G31730 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | |||
GRMZM2G099425 | Module123 | AT5G12480 | CPK7 | calmodulin-domain protein kinase 7 | calmodulin-domain protein kinase 7 | ||
GRMZM2G100288 | Module123 | AT3G51550 | FER | FERONIA | Malectin/receptor-like protein kinase family protein | ||
GRMZM2G006080 | Module123 | AT3G51550 | FER | FERONIA | Malectin/receptor-like protein kinase family protein | ||
GRMZM2G113668 | Module123 | AT4G34215 | AT4G34215 | Domain of unknown function (DUF303) | |||
GRMZM2G128641 | Module123 | AT1G32090 | AT1G32090 | early-responsive to dehydration stress protein (ERD4) | |||
GRMZM2G136534 | Module123 | AT5G14130 | AT5G14130 | Peroxidase superfamily protein | |||
GRMZM2G137788 | Module123 | AT1G66150 | TMK1 | transmembrane kinase 1 | transmembrane kinase 1 | ||
GRMZM2G150172 | Module123 | AT5G56170 | LLG1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 | ||
GRMZM2G119736 | Module123 | AT5G24010 | AT5G24010 | Protein kinase superfamily protein | |||
GRMZM2G155464 | Module123 | AT1G57680 | Cand1 | candidate G-protein Coupled Receptor 1 | |||
GRMZM2G158359 | Module123 | AT1G66150 | TMK1 | transmembrane kinase 1 | transmembrane kinase 1 | ||
GRMZM2G320506 | cdpk10 | Module123 | AT5G04870 | CPK1 | calcium dependent protein kinase 1 | calcium dependent protein kinase 1 | |
GRMZM2G333811 | Module123 | AT4G13340 | LRX3 | leucine-rich repeat/extensin 3 | Leucine-rich repeat (LRR) family protein | ||
GRMZM2G346263 | o10 | Module123 | |||||
GRMZM2G432722 | Module123 | AT3G46290 | HERK1 | hercules receptor kinase 1 | hercules receptor kinase 1 | ||
GRMZM2G441541 | rboh4 | Module123 | AT5G47910 | RBOHD | respiratory burst oxidase homologue D | respiratory burst oxidase homologue D | |
GRMZM2G457003 | Module123 | AT1G77580 | AT1G77580 | Plant protein of unknown function (DUF869) | |||
GRMZM2G471733 | Module123 | AT1G71020 | AT1G71020 | ARM repeat superfamily protein | |||
GRMZM5G869788 | Module123 | AT2G41640 | AT2G41640 | Glycosyltransferase family 61 protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module123 | 27 | 1 | GO:0004674 | molecular_function | protein serine/threonine kinase activity | 4.80E-07 | 8 | 858 |
Module123 | 27 | 2 | GO:0009506 | cellular_component | plasmodesma | 2.47E-06 | 6 | 520 |
Module123 | 27 | 3 | GO:0055044 | cellular_component | symplast | 2.47E-06 | 6 | 520 |
Module123 | 27 | 4 | GO:0005911 | cellular_component | cell-cell junction | 2.47E-06 | 6 | 520 |
Module123 | 27 | 5 | GO:0030054 | cellular_component | cell junction | 2.47E-06 | 6 | 520 |
Module123 | 27 | 6 | GO:0006468 | biological_process | protein phosphorylation | 3.11E-06 | 8 | 1190 |
Module123 | 27 | 7 | GO:0004672 | molecular_function | protein kinase activity | 4.38E-06 | 8 | 1149 |
Module123 | 27 | 8 | GO:0036211 | biological_process | protein modification process | 4.46E-06 | 9 | 1748 |
Module123 | 27 | 9 | GO:0006464 | biological_process | cellular protein modification process | 4.46E-06 | 9 | 1748 |
Module123 | 27 | 10 | GO:0043412 | biological_process | macromolecule modification | 7.34E-06 | 9 | 1854 |
Module123 | 27 | 11 | GO:0010483 | biological_process | pollen tube reception | 8.58E-06 | 2 | 5 |
Module123 | 27 | 12 | GO:0051703 | biological_process | intraspecies interaction between organisms | 8.58E-06 | 2 | 5 |
Module123 | 27 | 13 | GO:0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor | 1.30E-05 | 8 | 1329 |
Module123 | 27 | 14 | GO:0016310 | biological_process | phosphorylation | 2.13E-05 | 8 | 1537 |
Module123 | 27 | 15 | GO:0016301 | molecular_function | kinase activity | 2.56E-05 | 8 | 1458 |
Module123 | 27 | 16 | GO:0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups | 8.53E-05 | 8 | 1720 |
Module123 | 27 | 17 | GO:0006796 | biological_process | phosphate-containing compound metabolic process | 0.000143049 | 8 | 1990 |
Module123 | 27 | 18 | GO:0006793 | biological_process | phosphorus metabolic process | 0.000149433 | 8 | 2002 |
Module123 | 27 | 19 | GO:0044267 | biological_process | cellular protein metabolic process | 0.000213586 | 9 | 2783 |
Module123 | 27 | 20 | GO:0071944 | cellular_component | cell periphery | 0.000241276 | 8 | 2455 |
Module123 | 27 | 21 | GO:0016740 | molecular_function | transferase activity | 0.000269478 | 10 | 3316 |
Module123 | 27 | 22 | GO:0005524 | molecular_function | ATP binding | 0.00051246 | 8 | 2216 |
Module123 | 27 | 23 | GO:0032559 | molecular_function | adenyl ribonucleotide binding | 0.000627827 | 8 | 2282 |
Module123 | 27 | 24 | GO:0030554 | molecular_function | adenyl nucleotide binding | 0.000635459 | 8 | 2286 |
Module123 | 27 | 25 | GO:0005886 | cellular_component | plasma membrane | 0.00072421 | 7 | 2055 |
Module123 | 27 | 26 | GO:0019538 | biological_process | protein metabolic process | 0.000724401 | 9 | 3241 |
Module123 | 27 | 27 | GO:0035639 | molecular_function | purine ribonucleoside triphosphate binding | 0.001103683 | 8 | 2478 |
Module123 | 27 | 28 | GO:0032550 | molecular_function | purine ribonucleoside binding | 0.001318735 | 8 | 2544 |
Module123 | 27 | 29 | GO:0032555 | molecular_function | purine ribonucleotide binding | 0.001318735 | 8 | 2544 |
Module123 | 27 | 30 | GO:0001883 | molecular_function | purine nucleoside binding | 0.001318735 | 8 | 2544 |
Module123 | 27 | 31 | GO:0032549 | molecular_function | ribonucleoside binding | 0.001343429 | 8 | 2551 |
Module123 | 27 | 32 | GO:0017076 | molecular_function | purine nucleotide binding | 0.001346988 | 8 | 2552 |
Module123 | 27 | 33 | GO:0001882 | molecular_function | nucleoside binding | 0.001346988 | 8 | 2552 |
Module123 | 27 | 34 | GO:0032553 | molecular_function | ribonucleotide binding | 0.001461197 | 8 | 2583 |
Module123 | 27 | 35 | GO:0097367 | molecular_function | carbohydrate derivative binding | 0.001562995 | 8 | 2609 |
Module123 | 27 | 36 | GO:0010198 | biological_process | synergid death | 0.001928497 | 1 | 2 |
Module123 | 27 | 37 | GO:0012501 | biological_process | programmed cell death | 0.002113746 | 2 | 72 |
Module123 | 27 | 38 | GO:0010243 | biological_process | response to organonitrogen compound | 0.002172106 | 2 | 73 |
Module123 | 27 | 39 | GO:0005509 | molecular_function | calcium ion binding | 0.00284206 | 3 | 300 |
Module123 | 27 | 40 | GO:0046683 | biological_process | response to organophosphorus | 0.002891457 | 1 | 3 |
Module123 | 27 | 41 | GO:0016174 | molecular_function | NAD(P)H oxidase activity | 0.002923441 | 1 | 3 |
Module123 | 27 | 42 | GO:0010857 | molecular_function | calcium-dependent protein kinase activity | 0.003896139 | 1 | 4 |
Module123 | 27 | 43 | GO:0004697 | molecular_function | protein kinase C activity | 0.003896139 | 1 | 4 |
Module123 | 27 | 44 | GO:0004698 | molecular_function | calcium-dependent protein kinase C activity | 0.003896139 | 1 | 4 |
Module123 | 27 | 45 | GO:0009931 | molecular_function | calcium-dependent protein serine/threonine kinase activity | 0.003896139 | 1 | 4 |
Module123 | 27 | 46 | GO:0043168 | molecular_function | anion binding | 0.00392382 | 8 | 2999 |
Module123 | 27 | 47 | GO:0044426 | cellular_component | cell wall part | 0.004729913 | 1 | 5 |
Module123 | 27 | 48 | GO:0010623 | biological_process | developmental programmed cell death | 0.004814806 | 1 | 5 |
Module123 | 27 | 49 | GO:0008219 | biological_process | cell death | 0.005029871 | 2 | 112 |
Module123 | 27 | 50 | GO:0016265 | biological_process | death | 0.005029871 | 2 | 112 |
Module123 | 27 | 51 | GO:0044462 | cellular_component | external encapsulating structure part | 0.005673476 | 1 | 6 |
Module123 | 27 | 52 | GO:0007167 | biological_process | enzyme linked receptor protein signaling pathway | 0.005775195 | 1 | 6 |
Module123 | 27 | 53 | GO:0007178 | biological_process | transmembrane receptor protein serine/threonine kinase signaling pathway | 0.005775195 | 1 | 6 |
Module123 | 27 | 54 | GO:0004675 | molecular_function | transmembrane receptor protein serine/threonine kinase activity | 0.005838867 | 1 | 6 |
Module123 | 27 | 55 | GO:1901698 | biological_process | response to nitrogen compound | 0.006619155 | 2 | 129 |
Module123 | 27 | 56 | GO:0019199 | molecular_function | transmembrane receptor protein kinase activity | 0.007778043 | 1 | 8 |
Module123 | 27 | 57 | GO:0050832 | biological_process | defense response to fungus | 0.007969706 | 2 | 142 |
Module123 | 27 | 58 | GO:1901265 | molecular_function | nucleoside phosphate binding | 0.008244699 | 8 | 3369 |
Module123 | 27 | 59 | GO:0000166 | molecular_function | nucleotide binding | 0.008244699 | 8 | 3369 |
Module123 | 27 | 60 | GO:0036094 | molecular_function | small molecule binding | 0.009580274 | 8 | 3451 |
Module123 | 27 | 61 | GO:0007166 | biological_process | cell surface receptor signaling pathway | 0.010564323 | 1 | 11 |
Module123 | 27 | 62 | GO:0043069 | biological_process | negative regulation of programmed cell death | 0.010564323 | 1 | 11 |
Module123 | 27 | 63 | GO:0050664 | molecular_function | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | 0.010680159 | 1 | 11 |
Module123 | 27 | 64 | GO:0009856 | biological_process | pollination | 0.011905204 | 2 | 175 |
Module123 | 27 | 65 | GO:0044706 | biological_process | multi-multicellular organism process | 0.011905204 | 2 | 175 |
Module123 | 27 | 66 | GO:0004601 | molecular_function | peroxidase activity | 0.012578656 | 2 | 177 |
Module123 | 27 | 67 | GO:0016684 | molecular_function | oxidoreductase activity, acting on peroxide as acceptor | 0.012987806 | 2 | 180 |
Module123 | 27 | 68 | GO:0005887 | cellular_component | integral component of plasma membrane | 0.013193044 | 1 | 14 |
Module123 | 27 | 69 | GO:0050918 | biological_process | positive chemotaxis | 0.01342757 | 1 | 14 |
Module123 | 27 | 70 | GO:0010183 | biological_process | pollen tube guidance | 0.01342757 | 1 | 14 |
Module123 | 27 | 71 | GO:0042330 | biological_process | taxis | 0.01342757 | 1 | 14 |
Module123 | 27 | 72 | GO:0006935 | biological_process | chemotaxis | 0.01342757 | 1 | 14 |
Module123 | 27 | 73 | GO:0060548 | biological_process | negative regulation of cell death | 0.014380284 | 1 | 15 |
Module123 | 27 | 74 | GO:0009620 | biological_process | response to fungus | 0.01448865 | 2 | 194 |
Module123 | 27 | 75 | GO:0016209 | molecular_function | antioxidant activity | 0.01708278 | 2 | 208 |
Module123 | 27 | 76 | GO:0040011 | biological_process | locomotion | 0.017233334 | 1 | 18 |
Module123 | 27 | 77 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.01798369 | 9 | 4961 |
Module123 | 27 | 78 | GO:0005488 | molecular_function | binding | 0.021426375 | 15 | 11313 |
Module123 | 27 | 79 | GO:0004888 | molecular_function | transmembrane signaling receptor activity | 0.024118456 | 1 | 25 |
Module123 | 27 | 80 | GO:0090406 | cellular_component | pollen tube | 0.024376458 | 1 | 26 |
Module123 | 27 | 81 | GO:0042995 | cellular_component | cell projection | 0.02530324 | 1 | 27 |
Module123 | 27 | 82 | GO:0043167 | molecular_function | ion binding | 0.025390774 | 10 | 5827 |
Module123 | 27 | 83 | GO:0043067 | biological_process | regulation of programmed cell death | 0.026688536 | 1 | 28 |
Module123 | 27 | 84 | GO:0044703 | biological_process | multi-organism reproductive process | 0.027716077 | 2 | 274 |
Module123 | 27 | 85 | GO:0099600 | #N/A | transmembrane receptor activity | 0.028876234 | 1 | 30 |
Module123 | 27 | 86 | GO:0009567 | biological_process | double fertilization forming a zygote and endosperm | 0.029508679 | 1 | 31 |
Module123 | 27 | 87 | GO:0050896 | biological_process | response to stimulus | 0.030984515 | 7 | 3528 |
Module123 | 27 | 88 | GO:0009566 | biological_process | fertilization | 0.031384582 | 1 | 33 |
Module123 | 27 | 89 | GO:0010941 | biological_process | regulation of cell death | 0.032321278 | 1 | 34 |
Module123 | 27 | 90 | GO:0030154 | biological_process | cell differentiation | 0.032972377 | 2 | 301 |
Module123 | 27 | 91 | GO:0043170 | biological_process | macromolecule metabolic process | 0.03590196 | 9 | 5482 |
Module123 | 27 | 92 | GO:0009605 | biological_process | response to external stimulus | 0.039843713 | 3 | 814 |
Module123 | 27 | 93 | GO:0009719 | biological_process | response to endogenous stimulus | 0.041734703 | 3 | 829 |
Module123 | 27 | 94 | GO:0010200 | biological_process | response to chitin | 0.04627175 | 1 | 49 |
Module123 | 27 | 95 | GO:0032501 | biological_process | multicellular organismal process | 0.047139312 | 4 | 1491 |
Module123 | 27 | 96 | GO:0009060 | biological_process | aerobic respiration | 0.049960394 | 1 | 53 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G005996 | GRMZM2G137788 | 0.035 |
GRMZM2G028286 | GRMZM2G099425 | 0.0352 |
GRMZM2G028286 | GRMZM2G136534 | 0.0491 |
GRMZM2G028286 | GRMZM2G137788 | 0.044 |
GRMZM2G032484 | GRMZM2G017386 | 0.0375 |
GRMZM2G017386 | GRMZM2G050803 | 0.0437 |
GRMZM2G017386 | GRMZM2G137788 | 0.0365 |
GRMZM2G050803 | GRMZM2G005939 | 0.0657 |
GRMZM2G050803 | GRMZM2G072669 | 0.046 |
GRMZM2G050803 | GRMZM2G100288 | 0.0372 |
GRMZM2G050803 | GRMZM2G136534 | 0.0367 |
GRMZM2G050803 | GRMZM2G137788 | 0.0442 |
GRMZM2G050803 | GRMZM2G150172 | 0.0615 |
GRMZM2G050803 | GRMZM2G155464 | 0.0927 |
GRMZM2G050803 | GRMZM2G333811 | 0.0363 |
GRMZM2G050803 | GRMZM2G471733 | 0.0404 |
GRMZM2G005939 | GRMZM2G089596 | 0.0647 |
GRMZM2G005939 | GRMZM2G128641 | 0.0568 |
GRMZM2G005939 | GRMZM2G136534 | 0.0479 |
GRMZM2G089596 | GRMZM2G128641 | 0.0351 |
GRMZM2G089596 | GRMZM2G457003 | 0.04 |
GRMZM2G100288 | GRMZM2G006080 | 0.0444 |
GRMZM2G100288 | GRMZM2G137788 | 0.0404 |
GRMZM2G006080 | GRMZM2G137788 | 0.0595 |
GRMZM2G006080 | GRMZM2G158359 | 0.0359 |
GRMZM2G113668 | GRMZM2G137788 | 0.0402 |
GRMZM2G128641 | GRMZM2G136534 | 0.0401 |
GRMZM2G128641 | GRMZM2G150172 | 0.0385 |
GRMZM2G128641 | cdpk10 | 0.0423 |
GRMZM2G128641 | GRMZM2G333811 | 0.0413 |
GRMZM2G128641 | o10 | 0.0472 |
GRMZM2G128641 | GRMZM5G869788 | 0.037 |
GRMZM2G136534 | GRMZM2G137788 | 0.0404 |
GRMZM2G136534 | GRMZM2G150172 | 0.0379 |
GRMZM2G136534 | GRMZM2G333811 | 0.0397 |
GRMZM2G137788 | GRMZM2G155464 | 0.0425 |
GRMZM2G137788 | GRMZM2G158359 | 0.0751 |
GRMZM2G137788 | GRMZM2G432722 | 0.038 |
GRMZM2G137788 | GRMZM2G471733 | 0.0481 |
GRMZM2G150172 | GRMZM2G119736 | 0.0386 |
GRMZM2G150172 | rboh4 | 0.0366 |
GRMZM2G150172 | GRMZM2G457003 | 0.0471 |
GRMZM2G150172 | GRMZM2G471733 | 0.0493 |