This page contains information for Module124, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G015788 | Module124 | ||||||
GRMZM2G015818 | Module124 | ||||||
GRMZM2G033962 | Module124 | AT5G02810 | PRR7 | pseudo-response regulator 7 | pseudo-response regulator 7 | Pseudo ARR-B | |
GRMZM2G005732 | Module124 | AT5G02810 | PRR7 | pseudo-response regulator 7 | pseudo-response regulator 7 | Pseudo ARR-B | |
GRMZM2G058862 | Module124 | AT3G52390 | AT3G52390 | TatD related DNase | |||
GRMZM2G076798 | Module124 | ||||||
GRMZM2G079281 | Module124 | ||||||
GRMZM2G079339 | Module124 | ||||||
GRMZM2G094100 | Module124 | AT3G56070 | ROC2 | rotamase cyclophilin 2 | rotamase cyclophilin 2 | ||
GRMZM2G095727 | Module124 | AT5G02810 | PRR7 | pseudo-response regulator 7 | pseudo-response regulator 7 | Pseudo ARR-B | |
GRMZM2G109399 | Module124 | ||||||
GRMZM2G110726 | Module124 | AT5G53400 | BOB1 | BOBBER1 | HSP20-like chaperones superfamily protein | ||
GRMZM2G115698 | Module124 | ||||||
GRMZM2G316256 | Module124 | AT1G07890 | APX1 | ascorbate peroxidase 1 | ascorbate peroxidase 1 | ||
GRMZM2G143535 | Module124 | AT3G12040 | AT3G12040 | DNA-3-methyladenine glycosylase (MAG) | |||
GRMZM2G341405 | Module124 | AT3G46460 | UBC13 | ubiquitin-conjugating enzyme 13 | ubiquitin-conjugating enzyme 13 | ||
GRMZM2G357683 | Module124 | AT5G37150 | AT5G37150 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | |||
GRMZM2G072339 | Module124 | AT2G43970 | LARP6b | La related protein 6b | RNA-binding protein | ||
GRMZM2G373459 | Module124 | ||||||
GRMZM2G375420 | Module124 | AT5G51040 | SDHAF2 | Succinate dehydrogenase assembly factor 2 | |||
GRMZM2G386389 | Module124 | ||||||
GRMZM2G410812 | pco066521 | Module124 | AT1G23100 | AT1G23100 | GroES-like family protein | ||
GRMZM2G507091 | Module124 | ||||||
GRMZM2G590771 | Module124 | ||||||
GRMZM5G819035 | Module124 | AT3G51950 | AT3G51950 | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | C3H | ||
GRMZM5G881064 | Module124 | ||||||
GRMZM2G411569 | Module124 | AT5G38460 | AT5G38460 | ALG6, ALG8 glycosyltransferase family |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module124 | 27 | 1 | GO:0000156 | molecular_function | phosphorelay response regulator activity | 2.88E-08 | 4 | 47 |
Module124 | 27 | 2 | GO:0000160 | biological_process | phosphorelay signal transduction system | 1.49E-07 | 4 | 81 |
Module124 | 27 | 3 | GO:0005057 | molecular_function | receptor signaling protein activity | 3.07E-07 | 4 | 84 |
Module124 | 27 | 4 | GO:0004871 | molecular_function | signal transducer activity | 3.31E-06 | 4 | 152 |
Module124 | 27 | 5 | GO:0035556 | biological_process | intracellular signal transduction | 1.19E-05 | 4 | 242 |
Module124 | 27 | 6 | GO:0050896 | biological_process | response to stimulus | 0.000151571 | 8 | 3528 |
Module124 | 27 | 7 | GO:0006457 | biological_process | protein folding | 0.000309095 | 3 | 214 |
Module124 | 27 | 8 | GO:0051716 | biological_process | cellular response to stimulus | 0.00042036 | 5 | 1149 |
Module124 | 27 | 9 | GO:0007165 | biological_process | signal transduction | 0.000725404 | 4 | 697 |
Module124 | 27 | 10 | GO:0023052 | biological_process | signaling | 0.000761577 | 4 | 706 |
Module124 | 27 | 11 | GO:0044700 | biological_process | single organism signaling | 0.000761577 | 4 | 706 |
Module124 | 27 | 12 | GO:0007154 | biological_process | cell communication | 0.001622421 | 4 | 863 |
Module124 | 27 | 13 | GO:0009266 | biological_process | response to temperature stimulus | 0.002622727 | 3 | 447 |
Module124 | 27 | 14 | GO:0003905 | molecular_function | alkylbase DNA N-glycosylase activity | 0.004381821 | 1 | 6 |
Module124 | 27 | 15 | GO:0009408 | biological_process | response to heat | 0.004601474 | 2 | 157 |
Module124 | 27 | 16 | GO:0016888 | molecular_function | endodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.006566125 | 1 | 9 |
Module124 | 27 | 17 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.007161778 | 4 | 1293 |
Module124 | 27 | 18 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.007161778 | 4 | 1293 |
Module124 | 27 | 19 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.007161778 | 4 | 1293 |
Module124 | 27 | 20 | GO:0019104 | molecular_function | DNA N-glycosylase activity | 0.007293249 | 1 | 10 |
Module124 | 27 | 21 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.00738314 | 4 | 1304 |
Module124 | 27 | 22 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.007912714 | 5 | 2185 |
Module124 | 27 | 23 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.007989176 | 4 | 1333 |
Module124 | 27 | 24 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.008902904 | 4 | 1374 |
Module124 | 27 | 25 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.008902904 | 4 | 1374 |
Module124 | 27 | 26 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.009688257 | 4 | 1407 |
Module124 | 27 | 27 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.009737316 | 4 | 1409 |
Module124 | 27 | 28 | GO:0010468 | biological_process | regulation of gene expression | 0.009860702 | 4 | 1414 |
Module124 | 27 | 29 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.009860702 | 4 | 1414 |
Module124 | 27 | 30 | GO:0006351 | biological_process | transcription, DNA-templated | 0.009860702 | 4 | 1414 |
Module124 | 27 | 31 | GO:0032774 | biological_process | RNA biosynthetic process | 0.009985147 | 4 | 1419 |
Module124 | 27 | 32 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.010060324 | 4 | 1422 |
Module124 | 27 | 33 | GO:0009880 | biological_process | embryonic pattern specification | 0.010638199 | 1 | 16 |
Module124 | 27 | 34 | GO:0009678 | molecular_function | hydrogen-translocating pyrophosphatase activity | 0.012369477 | 1 | 17 |
Module124 | 27 | 35 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.012939745 | 4 | 1527 |
Module124 | 27 | 36 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.013089242 | 4 | 1532 |
Module124 | 27 | 37 | GO:0004520 | molecular_function | endodeoxyribonuclease activity | 0.013092706 | 1 | 18 |
Module124 | 27 | 38 | GO:0004536 | molecular_function | deoxyribonuclease activity | 0.013092706 | 1 | 18 |
Module124 | 27 | 39 | GO:0010017 | biological_process | red or far-red light signaling pathway | 0.013281979 | 1 | 20 |
Module124 | 27 | 40 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.013760821 | 4 | 1554 |
Module124 | 27 | 41 | GO:0071489 | biological_process | cellular response to red or far red light | 0.013941942 | 1 | 21 |
Module124 | 27 | 42 | GO:0006284 | biological_process | base-excision repair | 0.013941942 | 1 | 21 |
Module124 | 27 | 43 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.015205657 | 4 | 1599 |
Module124 | 27 | 44 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.016700386 | 5 | 2597 |
Module124 | 27 | 45 | GO:0016799 | molecular_function | hydrolase activity, hydrolyzing N-glycosyl compounds | 0.016701579 | 1 | 23 |
Module124 | 27 | 46 | GO:0004427 | molecular_function | inorganic diphosphatase activity | 0.018141737 | 1 | 25 |
Module124 | 27 | 47 | GO:0019222 | biological_process | regulation of metabolic process | 0.021236722 | 4 | 1761 |
Module124 | 27 | 48 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.023066003 | 4 | 1804 |
Module124 | 27 | 49 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.023638606 | 4 | 1817 |
Module124 | 27 | 50 | GO:0016893 | molecular_function | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.023883058 | 1 | 33 |
Module124 | 27 | 51 | GO:0046483 | biological_process | heterocycle metabolic process | 0.02528603 | 5 | 2866 |
Module124 | 27 | 52 | GO:0016070 | biological_process | RNA metabolic process | 0.025318749 | 4 | 1854 |
Module124 | 27 | 53 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.02689976 | 5 | 2909 |
Module124 | 27 | 54 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.02870507 | 4 | 1924 |
Module124 | 27 | 55 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.03050795 | 5 | 2999 |
Module124 | 27 | 56 | GO:0071482 | biological_process | cellular response to light stimulus | 0.034854682 | 1 | 53 |
Module124 | 27 | 57 | GO:0071478 | biological_process | cellular response to radiation | 0.034854682 | 1 | 53 |
Module124 | 27 | 58 | GO:0006950 | biological_process | response to stress | 0.036377437 | 4 | 2065 |
Module124 | 27 | 59 | GO:0003755 | molecular_function | peptidyl-prolyl cis-trans isomerase activity | 0.040218371 | 1 | 56 |
Module124 | 27 | 60 | GO:0007623 | biological_process | circadian rhythm | 0.040664905 | 1 | 62 |
Module124 | 27 | 61 | GO:0048511 | biological_process | rhythmic process | 0.040664905 | 1 | 62 |
Module124 | 27 | 62 | GO:0016859 | molecular_function | cis-trans isomerase activity | 0.042330489 | 1 | 59 |
Module124 | 27 | 63 | GO:0005789 | cellular_component | endoplasmic reticulum membrane | 0.042844059 | 1 | 92 |
Module124 | 27 | 64 | GO:0042175 | cellular_component | nuclear outer membrane-endoplasmic reticulum membrane network | 0.043301546 | 1 | 93 |
Module124 | 27 | 65 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated | 0.043879353 | 1 | 67 |
Module124 | 27 | 66 | GO:1903507 | biological_process | negative regulation of nucleic acid-templated transcription | 0.043879353 | 1 | 67 |
Module124 | 27 | 67 | GO:1902679 | biological_process | negative regulation of RNA biosynthetic process | 0.043879353 | 1 | 67 |
Module124 | 27 | 68 | GO:0051253 | biological_process | negative regulation of RNA metabolic process | 0.044521092 | 1 | 68 |
Module124 | 27 | 69 | GO:0044432 | cellular_component | endoplasmic reticulum part | 0.04786681 | 1 | 103 |
Module124 | 27 | 70 | GO:0004519 | molecular_function | endonuclease activity | 0.049340146 | 1 | 69 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G015788 | GRMZM2G015818 | 0.0501 |
GRMZM2G015788 | GRMZM2G094100 | 0.0543 |
GRMZM2G015788 | GRMZM2G109399 | 0.0693 |
GRMZM2G015818 | GRMZM2G079281 | 0.0401 |
GRMZM2G015818 | GRMZM2G094100 | 0.035 |
GRMZM2G015818 | GRMZM2G110726 | 0.0633 |
GRMZM2G015818 | GRMZM2G316256 | 0.0445 |
GRMZM2G015818 | pco066521 | 0.0596 |
GRMZM2G033962 | GRMZM2G005732 | 0.0887 |
GRMZM2G033962 | GRMZM2G079339 | 0.067 |
GRMZM2G033962 | GRMZM2G095727 | 0.0369 |
GRMZM2G033962 | GRMZM2G316256 | 0.0429 |
GRMZM2G005732 | GRMZM2G095727 | 0.0538 |
GRMZM2G058862 | GRMZM2G079339 | 0.0476 |
GRMZM2G058862 | GRMZM2G109399 | 0.0442 |
GRMZM2G058862 | GRMZM2G115698 | 0.0475 |
GRMZM2G058862 | GRMZM2G341405 | 0.0489 |
GRMZM2G058862 | GRMZM5G881064 | 0.0352 |
GRMZM2G076798 | GRMZM2G590771 | 0.044 |
GRMZM2G079281 | GRMZM2G316256 | 0.0738 |
GRMZM2G079281 | GRMZM2G357683 | 0.0533 |
GRMZM2G079281 | GRMZM2G375420 | 0.0747 |
GRMZM2G079281 | pco066521 | 0.042 |
GRMZM2G079281 | GRMZM5G881064 | 0.0485 |
GRMZM2G079339 | GRMZM2G094100 | 0.0472 |
GRMZM2G079339 | GRMZM2G109399 | 0.0717 |
GRMZM2G079339 | GRMZM2G115698 | 0.0387 |
GRMZM2G079339 | GRMZM2G357683 | 0.0911 |
GRMZM2G079339 | GRMZM2G375420 | 0.0557 |
GRMZM2G079339 | GRMZM5G819035 | 0.0365 |
GRMZM2G094100 | GRMZM2G109399 | 0.0533 |
GRMZM2G094100 | GRMZM2G357683 | 0.0438 |
GRMZM2G094100 | GRMZM2G507091 | 0.0776 |
GRMZM2G094100 | GRMZM5G881064 | 0.043 |
GRMZM2G109399 | GRMZM2G375420 | 0.0389 |
GRMZM2G109399 | pco066521 | 0.0416 |
GRMZM2G109399 | GRMZM5G881064 | 0.0468 |
GRMZM2G110726 | GRMZM2G115698 | 0.0419 |
GRMZM2G110726 | GRMZM2G357683 | 0.0429 |
GRMZM2G110726 | pco066521 | 0.0434 |
GRMZM2G115698 | GRMZM5G881064 | 0.0367 |
GRMZM2G316256 | GRMZM2G143535 | 0.0644 |
GRMZM2G316256 | GRMZM2G357683 | 0.0785 |
GRMZM2G316256 | pco066521 | 0.0634 |
GRMZM2G316256 | GRMZM2G590771 | 0.0417 |
GRMZM2G316256 | GRMZM5G819035 | 0.0708 |
GRMZM2G316256 | GRMZM5G881064 | 0.0612 |
GRMZM2G357683 | GRMZM2G072339 | 0.0368 |
GRMZM2G357683 | GRMZM2G375420 | 0.0397 |
GRMZM2G357683 | GRMZM2G386389 | 0.044 |
GRMZM2G357683 | pco066521 | 0.0623 |
GRMZM2G357683 | GRMZM5G819035 | 0.0666 |
GRMZM2G357683 | GRMZM5G881064 | 0.0529 |
GRMZM2G373459 | GRMZM2G386389 | 0.0904 |
GRMZM2G386389 | GRMZM5G881064 | 0.0419 |
pco066521 | GRMZM5G881064 | 0.0632 |
GRMZM5G881064 | GRMZM2G411569 | 0.1051 |