This page contains information for Module125, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G026216 | Module125 | AT1G57660 | AT1G57660 | Translation protein SH3-like family protein | |||
GRMZM2G004057 | Module125 | AT1G57660 | AT1G57660 | Translation protein SH3-like family protein | |||
GRMZM2G040477 | rack2 | Module125 | AT1G18080 | ATARCA | Transducin/WD40 repeat-like superfamily protein | ||
GRMZM2G014444 | Module125 | AT3G58700 | AT3G58700 | Ribosomal L5P family protein | |||
GRMZM2G041238 | Module125 | AT3G49910 | AT3G49910 | Translation protein SH3-like family protein | |||
GRMZM2G016250 | Module125 | AT4G15000 | AT4G15000 | Ribosomal L27e protein family | |||
GRMZM2G074300 | Module125 | AT5G35530 | AT5G35530 | Ribosomal protein S3 family protein | |||
GRMZM2G063617 | Module125 | AT3G05560 | AT3G05560 | Ribosomal L22e protein family | |||
GRMZM2G083497 | Module125 | AT1G07770 | RPS15A | ribosomal protein S15A | ribosomal protein S15A | ||
GRMZM2G018228 | Module125 | AT1G07770 | RPS15A | ribosomal protein S15A | ribosomal protein S15A | ||
GRMZM2G084739 | Module125 | AT1G33120 | AT1G33120 | Ribosomal protein L6 family | |||
GRMZM2G099352 | rps3 | Module125 | AT5G35530 | AT5G35530 | Ribosomal protein S3 family protein | ||
GRMZM2G060373 | Module125 | AT3G43980 | AT3G43980 | Ribosomal protein S14p/S29e family protein | |||
GRMZM2G123495 | Module125 | AT1G04480 | AT1G04480 | Ribosomal protein L14p/L23e family protein | |||
GRMZM2G100467 | rpl39 | Module125 | AT4G31985 | AT4G31985 | Ribosomal protein L39 family protein | ||
GRMZM2G150058 | Module125 | AT1G04480 | AT1G04480 | Ribosomal protein L14p/L23e family protein | |||
GRMZM2G177720 | Module125 | AT1G07770 | RPS15A | ribosomal protein S15A | ribosomal protein S15A | ||
GRMZM2G132623 | Module125 | AT2G19740 | AT2G19740 | Ribosomal protein L31e family protein | |||
GRMZM2G327564 | Module125 | AT3G49910 | AT3G49910 | Translation protein SH3-like family protein | |||
GRMZM2G353103 | Module125 | AT2G09990 | AT2G09990 | Ribosomal protein S5 domain 2-like superfamily protein | |||
GRMZM2G090422 | mta1 | Module125 | AT5G48760 | AT5G48760 | Ribosomal protein L13 family protein | ||
GRMZM2G385287 | Module125 | AT1G33120 | AT1G33120 | Ribosomal protein L6 family | |||
GRMZM2G043279 | Module125 | AT3G09500 | AT3G09500 | Ribosomal L29 family protein | |||
GRMZM2G100225 | Module125 | AT3G13580 | AT3G13580 | Ribosomal protein L30/L7 family protein | |||
GRMZM2G158568 | Module125 | AT5G56710 | AT5G56710 | Ribosomal protein L31e family protein | |||
GRMZM2G427468 | Module125 | AT1G23290 | RPL27AB | Ribosomal protein L18e/L15 superfamily protein | |||
GRMZM5G827266 | Module125 | AT2G40510 | AT2G40510 | Ribosomal protein S26e family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module125 | 27 | 1 | GO:0003735 | molecular_function | structural constituent of ribosome | 2.27E-37 | 25 | 505 |
Module125 | 27 | 2 | GO:0005198 | molecular_function | structural molecule activity | 1.85E-35 | 25 | 600 |
Module125 | 27 | 3 | GO:0005840 | cellular_component | ribosome | 3.86E-34 | 27 | 623 |
Module125 | 27 | 4 | GO:1990904 | cellular_component | ribonucleoprotein complex | 2.16E-32 | 27 | 721 |
Module125 | 27 | 5 | GO:0030529 | cellular_component | intracellular ribonucleoprotein complex | 2.16E-32 | 27 | 721 |
Module125 | 27 | 6 | GO:0006412 | biological_process | translation | 2.04E-30 | 25 | 781 |
Module125 | 27 | 7 | GO:0043043 | biological_process | peptide biosynthetic process | 2.64E-30 | 25 | 789 |
Module125 | 27 | 8 | GO:0006518 | biological_process | peptide metabolic process | 5.46E-30 | 25 | 812 |
Module125 | 27 | 9 | GO:0043604 | biological_process | amide biosynthetic process | 7.44E-30 | 25 | 822 |
Module125 | 27 | 10 | GO:0043603 | biological_process | cellular amide metabolic process | 2.87E-29 | 25 | 867 |
Module125 | 27 | 11 | GO:0022626 | cellular_component | cytosolic ribosome | 1.31E-27 | 21 | 316 |
Module125 | 27 | 12 | GO:0044445 | cellular_component | cytosolic part | 9.18E-27 | 21 | 346 |
Module125 | 27 | 13 | GO:0043228 | cellular_component | non-membrane-bounded organelle | 4.35E-25 | 27 | 1333 |
Module125 | 27 | 14 | GO:0043232 | cellular_component | intracellular non-membrane-bounded organelle | 4.35E-25 | 27 | 1333 |
Module125 | 27 | 15 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 1.04E-24 | 25 | 1315 |
Module125 | 27 | 16 | GO:0044391 | cellular_component | ribosomal subunit | 5.86E-23 | 18 | 273 |
Module125 | 27 | 17 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 2.03E-21 | 25 | 1779 |
Module125 | 27 | 18 | GO:0032991 | cellular_component | macromolecular complex | 2.19E-20 | 27 | 1984 |
Module125 | 27 | 19 | GO:0015934 | cellular_component | large ribosomal subunit | 4.22E-19 | 14 | 163 |
Module125 | 27 | 20 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 1.07E-17 | 25 | 2507 |
Module125 | 27 | 21 | GO:0010467 | biological_process | gene expression | 1.12E-17 | 25 | 2512 |
Module125 | 27 | 22 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 1.29E-17 | 25 | 2526 |
Module125 | 27 | 23 | GO:0009059 | biological_process | macromolecule biosynthetic process | 1.31E-17 | 25 | 2528 |
Module125 | 27 | 24 | GO:0044267 | biological_process | cellular protein metabolic process | 1.43E-16 | 25 | 2783 |
Module125 | 27 | 25 | GO:0022625 | cellular_component | cytosolic large ribosomal subunit | 1.44E-16 | 12 | 133 |
Module125 | 27 | 26 | GO:0019538 | biological_process | protein metabolic process | 6.29E-15 | 25 | 3241 |
Module125 | 27 | 27 | GO:0005829 | cellular_component | cytosol | 1.36E-14 | 21 | 1321 |
Module125 | 27 | 28 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 5.80E-14 | 25 | 3545 |
Module125 | 27 | 29 | GO:0044249 | biological_process | cellular biosynthetic process | 5.84E-14 | 25 | 3546 |
Module125 | 27 | 30 | GO:1901576 | biological_process | organic substance biosynthetic process | 8.84E-14 | 25 | 3606 |
Module125 | 27 | 31 | GO:0009058 | biological_process | biosynthetic process | 2.49E-13 | 25 | 3760 |
Module125 | 27 | 32 | GO:0006807 | biological_process | nitrogen compound metabolic process | 5.65E-13 | 25 | 3887 |
Module125 | 27 | 33 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 2.29E-10 | 25 | 4961 |
Module125 | 27 | 34 | GO:0005730 | cellular_component | nucleolus | 2.47E-10 | 12 | 442 |
Module125 | 27 | 35 | GO:0043170 | biological_process | macromolecule metabolic process | 2.63E-09 | 25 | 5482 |
Module125 | 27 | 36 | GO:0031981 | cellular_component | nuclear lumen | 8.25E-09 | 12 | 601 |
Module125 | 27 | 37 | GO:0044444 | cellular_component | cytoplasmic part | 1.43E-08 | 27 | 5412 |
Module125 | 27 | 38 | GO:0070013 | cellular_component | intracellular organelle lumen | 2.61E-08 | 12 | 666 |
Module125 | 27 | 39 | GO:0043233 | cellular_component | organelle lumen | 2.61E-08 | 12 | 666 |
Module125 | 27 | 40 | GO:0031974 | cellular_component | membrane-enclosed lumen | 2.99E-08 | 12 | 674 |
Module125 | 27 | 41 | GO:0044428 | cellular_component | nuclear part | 8.19E-08 | 12 | 738 |
Module125 | 27 | 42 | GO:0005737 | cellular_component | cytoplasm | 1.48E-07 | 27 | 5900 |
Module125 | 27 | 43 | GO:0044237 | biological_process | cellular metabolic process | 1.18E-06 | 25 | 7053 |
Module125 | 27 | 44 | GO:0044446 | cellular_component | intracellular organelle part | 1.55E-06 | 20 | 3055 |
Module125 | 27 | 45 | GO:0044422 | cellular_component | organelle part | 1.59E-06 | 20 | 3060 |
Module125 | 27 | 46 | GO:0044238 | biological_process | primary metabolic process | 3.34E-06 | 25 | 7365 |
Module125 | 27 | 47 | GO:0043229 | cellular_component | intracellular organelle | 3.98E-06 | 27 | 6663 |
Module125 | 27 | 48 | GO:0043226 | cellular_component | organelle | 4.01E-06 | 27 | 6665 |
Module125 | 27 | 49 | GO:0071704 | biological_process | organic substance metabolic process | 1.30E-05 | 25 | 7797 |
Module125 | 27 | 50 | GO:0022627 | cellular_component | cytosolic small ribosomal subunit | 3.10E-05 | 4 | 72 |
Module125 | 27 | 51 | GO:0015935 | cellular_component | small ribosomal subunit | 0.000168827 | 4 | 111 |
Module125 | 27 | 52 | GO:0044424 | cellular_component | intracellular part | 0.000209699 | 27 | 7715 |
Module125 | 27 | 53 | GO:0005622 | cellular_component | intracellular | 0.000772255 | 27 | 8096 |
Module125 | 27 | 54 | GO:0009987 | biological_process | cellular process | 0.000929284 | 25 | 9353 |
Module125 | 27 | 55 | GO:0009955 | biological_process | adaxial/abaxial pattern specification | 0.001044933 | 2 | 25 |
Module125 | 27 | 56 | GO:0019843 | molecular_function | rRNA binding | 0.002499337 | 2 | 47 |
Module125 | 27 | 57 | GO:0008152 | biological_process | metabolic process | 0.002870739 | 25 | 9826 |
Module125 | 27 | 58 | GO:0005618 | cellular_component | cell wall | 0.004175817 | 6 | 622 |
Module125 | 27 | 59 | GO:0030312 | cellular_component | external encapsulating structure | 0.004209041 | 6 | 623 |
Module125 | 27 | 60 | GO:0009507 | cellular_component | chloroplast | 0.008142444 | 11 | 2032 |
Module125 | 27 | 61 | GO:0009506 | cellular_component | plasmodesma | 0.009342409 | 5 | 520 |
Module125 | 27 | 62 | GO:0055044 | cellular_component | symplast | 0.009342409 | 5 | 520 |
Module125 | 27 | 63 | GO:0005911 | cellular_component | cell-cell junction | 0.009342409 | 5 | 520 |
Module125 | 27 | 64 | GO:0030054 | cellular_component | cell junction | 0.009342409 | 5 | 520 |
Module125 | 27 | 65 | GO:0005634 | cellular_component | nucleus | 0.010945272 | 12 | 2423 |
Module125 | 27 | 66 | GO:0009536 | cellular_component | plastid | 0.012114937 | 11 | 2141 |
Module125 | 27 | 67 | GO:0003723 | molecular_function | RNA binding | 0.014846642 | 4 | 611 |
Module125 | 27 | 68 | GO:0044464 | cellular_component | cell part | 0.017120903 | 27 | 9079 |
Module125 | 27 | 69 | GO:0005623 | cellular_component | cell | 0.017120903 | 27 | 9079 |
Module125 | 27 | 70 | GO:0003002 | biological_process | regionalization | 0.019866111 | 2 | 113 |
Module125 | 27 | 71 | GO:0007389 | biological_process | pattern specification process | 0.025436347 | 2 | 129 |
Module125 | 27 | 72 | GO:0005886 | cellular_component | plasma membrane | 0.025454235 | 10 | 2055 |
Module125 | 27 | 73 | GO:0071944 | cellular_component | cell periphery | 0.03244659 | 11 | 2455 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G026216 | GRMZM2G004057 | 0.0354 |
GRMZM2G026216 | GRMZM2G041238 | 0.0361 |
rack2 | GRMZM2G014444 | 0.0356 |
rack2 | GRMZM2G084739 | 0.0403 |
rack2 | GRMZM2G353103 | 0.0431 |
rack2 | GRMZM2G385287 | 0.0385 |
GRMZM2G041238 | GRMZM2G016250 | 0.0383 |
GRMZM2G041238 | GRMZM2G327564 | 0.0587 |
GRMZM2G041238 | GRMZM2G353103 | 0.0408 |
GRMZM2G041238 | GRMZM2G427468 | 0.0361 |
GRMZM2G016250 | GRMZM2G084739 | 0.035 |
GRMZM2G016250 | GRMZM2G353103 | 0.0497 |
GRMZM2G074300 | GRMZM2G063617 | 0.0388 |
GRMZM2G074300 | rps3 | 0.0396 |
GRMZM2G063617 | GRMZM2G385287 | 0.0366 |
GRMZM2G083497 | GRMZM2G018228 | 0.0398 |
GRMZM2G018228 | GRMZM2G084739 | 0.0398 |
GRMZM2G084739 | GRMZM2G150058 | 0.0386 |
GRMZM2G084739 | GRMZM2G353103 | 0.0539 |
GRMZM2G084739 | GRMZM2G385287 | 0.0639 |
rps3 | GRMZM2G060373 | 0.0408 |
GRMZM2G123495 | rpl39 | 0.0374 |
rpl39 | GRMZM2G353103 | 0.0376 |
GRMZM2G150058 | GRMZM2G353103 | 0.0352 |
GRMZM2G150058 | GRMZM5G827266 | 0.0362 |
GRMZM2G177720 | GRMZM2G132623 | 0.0379 |
GRMZM2G177720 | GRMZM2G385287 | 0.0369 |
GRMZM2G327564 | GRMZM2G353103 | 0.038 |
GRMZM2G353103 | mta1 | 0.0353 |
GRMZM2G353103 | GRMZM2G385287 | 0.0409 |
GRMZM2G385287 | GRMZM2G043279 | 0.0444 |
GRMZM2G385287 | GRMZM2G100225 | 0.0357 |
GRMZM2G385287 | GRMZM2G158568 | 0.0402 |