This page contains information for Module129, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC207722.2_FG009 | lhcb2 | Module129 | AT2G34420 | LHB1B2 | photosystem II light harvesting complex gene B1B2 | photosystem II light harvesting complex gene B1B2 | |
AC190623.3_FG001 | Module129 | AT2G30570 | PSBW | photosystem II reaction center W | photosystem II reaction center W | ||
GRMZM2G010884 | Module129 | AT1G61520 | LHCA3 | photosystem I light harvesting complex gene 3 | photosystem I light harvesting complex gene 3 | ||
GRMZM2G001653 | Module129 | AT1G08380 | PSAO | photosystem I subunit O | photosystem I subunit O | ||
GRMZM2G012397 | psa6 | Module129 | AT1G30380 | PSAK | photosystem I subunit K | photosystem I subunit K | |
GRMZM2G013342 | Module129 | AT4G02770 | PSAD-1 | photosystem I subunit D-1 | photosystem I subunit D-1 | ||
GRMZM2G016066 | Module129 | AT4G28750 | PSAE-1 | PSA E1 KNOCKOUT | Photosystem I reaction centre subunit IV / PsaE protein | ||
GRMZM2G025954 | Module129 | AT5G16400 | TRXF2 | thioredoxin F2 | thioredoxin F2 | ||
GRMZM2G033885 | psb29 | Module129 | AT5G01530 | LHCB4.1 | light harvesting complex photosystem II | light harvesting complex photosystem II | |
GRMZM2G047954 | Module129 | AT1G06680 | PSBP-1 | photosystem II subunit P-1 | photosystem II subunit P-1 | ||
GRMZM2G057281 | Module129 | AT5G54270 | LHCB3 | light-harvesting chlorophyll B-binding protein 3 | light-harvesting chlorophyll B-binding protein 3 | ||
GRMZM2G080107 | psan1 | Module129 | AT5G64040 | PSAN | photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) | ||
GRMZM2G081462 | Module129 | AT3G56940 | CRD1 | COPPER RESPONSE DEFECT 1 | dicarboxylate diiron protein, putative (Crd1) | ||
GRMZM2G092311 | Module129 | AT3G54890 | LHCA1 | photosystem I light harvesting complex gene 1 | photosystem I light harvesting complex gene 1 | ||
GRMZM2G092427 | lhcb6 | Module129 | AT1G15820 | LHCB6 | light harvesting complex photosystem II subunit 6 | light harvesting complex photosystem II subunit 6 | |
GRMZM2G149428 | lhcb5 | Module129 | AT4G10340 | LHCB5 | light harvesting complex of photosystem II 5 | light harvesting complex of photosystem II 5 | |
GRMZM2G153184 | Module129 | AT3G47470 | LHCA4 | light-harvesting chlorophyll-protein complex I subunit A4 | light-harvesting chlorophyll-protein complex I subunit A4 | ||
GRMZM2G155216 | lhcb3 | Module129 | AT2G34420 | LHB1B2 | photosystem II light harvesting complex gene B1B2 | photosystem II light harvesting complex gene B1B2 | |
GRMZM2G041991 | col12 | Module129 | AT1G25440 | BBX15 | B-box domain protein 15 | B-box type zinc finger protein with CCT domain | C2C2-CO-like |
GRMZM2G160268 | Module129 | AT3G47470 | LHCA4 | light-harvesting chlorophyll-protein complex I subunit A4 | light-harvesting chlorophyll-protein complex I subunit A4 | ||
GRMZM2G072280 | Module129 | AT3G61470 | LHCA2 | photosystem I light harvesting complex gene 2 | photosystem I light harvesting complex gene 2 | ||
GRMZM2G175562 | oec33 | Module129 | AT3G50820 | PSBO2 | photosystem II subunit O-2 | photosystem II subunit O-2 | |
GRMZM2G337113 | gpa1 | Module129 | AT1G12900 | GAPA-2 | glyceraldehyde 3-phosphate dehydrogenase A subunit 2 | glyceraldehyde 3-phosphate dehydrogenase A subunit 2 | |
GRMZM2G046284 | pzb01301 | Module129 | AT4G38970 | FBA2 | fructose-bisphosphate aldolase 2 | fructose-bisphosphate aldolase 2 | |
GRMZM2G402936 | lhcb7 | Module129 | AT2G34420 | LHB1B2 | photosystem II light harvesting complex gene B1B2 | photosystem II light harvesting complex gene B1B2 | |
GRMZM6G910544 | Module129 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module129 | 26 | 1 | GO:0015979 | biological_process | photosynthesis | 1.69E-38 | 22 | 211 |
Module129 | 26 | 2 | GO:0009579 | cellular_component | thylakoid | 4.82E-29 | 23 | 496 |
Module129 | 26 | 3 | GO:0009765 | biological_process | photosynthesis, light harvesting | 7.34E-29 | 13 | 36 |
Module129 | 26 | 4 | GO:0019684 | biological_process | photosynthesis, light reaction | 4.42E-26 | 15 | 115 |
Module129 | 26 | 5 | GO:0010287 | cellular_component | plastoglobule | 8.41E-26 | 14 | 64 |
Module129 | 26 | 6 | GO:0009534 | cellular_component | chloroplast thylakoid | 2.99E-25 | 20 | 376 |
Module129 | 26 | 7 | GO:0031976 | cellular_component | plastid thylakoid | 3.15E-25 | 20 | 377 |
Module129 | 26 | 8 | GO:0044436 | cellular_component | thylakoid part | 2.70E-23 | 19 | 375 |
Module129 | 26 | 9 | GO:0031984 | cellular_component | organelle subcompartment | 5.43E-22 | 20 | 545 |
Module129 | 26 | 10 | GO:0034357 | cellular_component | photosynthetic membrane | 9.47E-22 | 18 | 359 |
Module129 | 26 | 11 | GO:0006091 | biological_process | generation of precursor metabolites and energy | 1.11E-20 | 16 | 339 |
Module129 | 26 | 12 | GO:0042651 | cellular_component | thylakoid membrane | 3.38E-20 | 17 | 346 |
Module129 | 26 | 13 | GO:0009535 | cellular_component | chloroplast thylakoid membrane | 3.55E-19 | 16 | 311 |
Module129 | 26 | 14 | GO:0055035 | cellular_component | plastid thylakoid membrane | 3.94E-19 | 16 | 313 |
Module129 | 26 | 15 | GO:0009521 | cellular_component | photosystem | 5.23E-18 | 11 | 76 |
Module129 | 26 | 16 | GO:0044434 | cellular_component | chloroplast part | 2.32E-17 | 21 | 1117 |
Module129 | 26 | 17 | GO:0044435 | cellular_component | plastid part | 3.23E-17 | 21 | 1135 |
Module129 | 26 | 18 | GO:0009507 | cellular_component | chloroplast | 6.35E-15 | 23 | 2032 |
Module129 | 26 | 19 | GO:0009570 | cellular_component | chloroplast stroma | 1.49E-14 | 16 | 607 |
Module129 | 26 | 20 | GO:0009536 | cellular_component | plastid | 2.07E-14 | 23 | 2141 |
Module129 | 26 | 21 | GO:0009532 | cellular_component | plastid stroma | 2.19E-14 | 16 | 622 |
Module129 | 26 | 22 | GO:0009522 | cellular_component | photosystem I | 3.28E-13 | 7 | 30 |
Module129 | 26 | 23 | GO:0010218 | biological_process | response to far red light | 7.00E-11 | 6 | 41 |
Module129 | 26 | 24 | GO:0010114 | biological_process | response to red light | 1.26E-10 | 6 | 45 |
Module129 | 26 | 25 | GO:0009637 | biological_process | response to blue light | 4.97E-10 | 6 | 56 |
Module129 | 26 | 26 | GO:0098796 | cellular_component | membrane protein complex | 8.06E-10 | 11 | 414 |
Module129 | 26 | 27 | GO:0009941 | cellular_component | chloroplast envelope | 8.96E-10 | 12 | 545 |
Module129 | 26 | 28 | GO:0009523 | cellular_component | photosystem II | 1.21E-09 | 6 | 49 |
Module129 | 26 | 29 | GO:0009526 | cellular_component | plastid envelope | 1.44E-09 | 12 | 568 |
Module129 | 26 | 30 | GO:0044446 | cellular_component | intracellular organelle part | 1.65E-08 | 21 | 3055 |
Module129 | 26 | 31 | GO:0044422 | cellular_component | organelle part | 1.70E-08 | 21 | 3060 |
Module129 | 26 | 32 | GO:0016168 | molecular_function | chlorophyll binding | 7.35E-08 | 3 | 8 |
Module129 | 26 | 33 | GO:0031967 | cellular_component | organelle envelope | 1.24E-07 | 12 | 844 |
Module129 | 26 | 34 | GO:0031975 | cellular_component | envelope | 1.40E-07 | 12 | 853 |
Module129 | 26 | 35 | GO:0009639 | biological_process | response to red or far red light | 1.42E-07 | 6 | 142 |
Module129 | 26 | 36 | GO:0046872 | molecular_function | metal ion binding | 4.53E-07 | 14 | 3184 |
Module129 | 26 | 37 | GO:0043169 | molecular_function | cation binding | 4.76E-07 | 14 | 3196 |
Module129 | 26 | 38 | GO:0009416 | biological_process | response to light stimulus | 8.28E-07 | 8 | 463 |
Module129 | 26 | 39 | GO:0009314 | biological_process | response to radiation | 1.04E-06 | 8 | 477 |
Module129 | 26 | 40 | GO:0044237 | biological_process | cellular metabolic process | 4.02E-06 | 23 | 7053 |
Module129 | 26 | 41 | GO:0044444 | cellular_component | cytoplasmic part | 1.63E-05 | 23 | 5412 |
Module129 | 26 | 42 | GO:0009768 | biological_process | photosynthesis, light harvesting in photosystem I | 1.82E-05 | 2 | 4 |
Module129 | 26 | 43 | GO:0042549 | biological_process | photosystem II stabilization | 4.54E-05 | 2 | 6 |
Module129 | 26 | 44 | GO:0016020 | cellular_component | membrane | 6.10E-05 | 21 | 4716 |
Module129 | 26 | 45 | GO:0010196 | biological_process | nonphotochemical quenching | 6.35E-05 | 2 | 7 |
Module129 | 26 | 46 | GO:1990066 | biological_process | energy quenching | 6.35E-05 | 2 | 7 |
Module129 | 26 | 47 | GO:0043234 | cellular_component | protein complex | 7.20E-05 | 11 | 1283 |
Module129 | 26 | 48 | GO:0009628 | biological_process | response to abiotic stimulus | 8.34E-05 | 10 | 1427 |
Module129 | 26 | 49 | GO:0005737 | cellular_component | cytoplasm | 9.93E-05 | 23 | 5900 |
Module129 | 26 | 50 | GO:0048046 | cellular_component | apoplast | 0.0001452 | 6 | 356 |
Module129 | 26 | 51 | GO:0009987 | biological_process | cellular process | 0.000154679 | 24 | 9353 |
Module129 | 26 | 52 | GO:0018298 | biological_process | protein-chromophore linkage | 0.00016556 | 2 | 11 |
Module129 | 26 | 53 | GO:0009538 | cellular_component | photosystem I reaction center | 0.00019201 | 2 | 9 |
Module129 | 26 | 54 | GO:0008187 | molecular_function | poly-pyrimidine tract binding | 0.000192328 | 2 | 18 |
Module129 | 26 | 55 | GO:0008266 | molecular_function | poly(U) RNA binding | 0.000192328 | 2 | 18 |
Module129 | 26 | 56 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.000245803 | 23 | 6165 |
Module129 | 26 | 57 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.000246622 | 23 | 6166 |
Module129 | 26 | 58 | GO:0031977 | cellular_component | thylakoid lumen | 0.000444844 | 3 | 64 |
Module129 | 26 | 59 | GO:0003727 | molecular_function | single-stranded RNA binding | 0.000471893 | 2 | 28 |
Module129 | 26 | 60 | GO:0008152 | biological_process | metabolic process | 0.000506139 | 24 | 9826 |
Module129 | 26 | 61 | GO:0042548 | biological_process | regulation of photosynthesis, light reaction | 0.0006253 | 2 | 21 |
Module129 | 26 | 62 | GO:0043467 | biological_process | regulation of generation of precursor metabolites and energy | 0.000751701 | 2 | 23 |
Module129 | 26 | 63 | GO:0043167 | molecular_function | ion binding | 0.000794315 | 14 | 5827 |
Module129 | 26 | 64 | GO:0032991 | cellular_component | macromolecular complex | 0.000857057 | 12 | 1984 |
Module129 | 26 | 65 | GO:0005576 | cellular_component | extracellular region | 0.001136979 | 6 | 523 |
Module129 | 26 | 66 | GO:0043229 | cellular_component | intracellular organelle | 0.001186351 | 23 | 6663 |
Module129 | 26 | 67 | GO:0043226 | cellular_component | organelle | 0.00119349 | 23 | 6665 |
Module129 | 26 | 68 | GO:0010109 | biological_process | regulation of photosynthesis | 0.001282653 | 2 | 30 |
Module129 | 26 | 69 | GO:0005622 | cellular_component | intracellular | 0.001314046 | 25 | 8096 |
Module129 | 26 | 70 | GO:0009654 | cellular_component | photosystem II oxygen evolving complex | 0.001823807 | 2 | 27 |
Module129 | 26 | 71 | GO:0044425 | cellular_component | membrane part | 0.002283361 | 11 | 1895 |
Module129 | 26 | 72 | GO:0048529 | molecular_function | magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.002315237 | 1 | 2 |
Module129 | 26 | 73 | GO:0010242 | molecular_function | oxygen evolving activity | 0.002315237 | 1 | 2 |
Module129 | 26 | 74 | GO:0044424 | cellular_component | intracellular part | 0.004018982 | 24 | 7715 |
Module129 | 26 | 75 | GO:0019898 | cellular_component | extrinsic component of membrane | 0.004175173 | 2 | 41 |
Module129 | 26 | 76 | GO:0009517 | cellular_component | PSII associated light-harvesting complex II | 0.004732601 | 1 | 2 |
Module129 | 26 | 77 | GO:0009503 | cellular_component | thylakoid light-harvesting complex | 0.004732601 | 1 | 2 |
Module129 | 26 | 78 | GO:0043891 | molecular_function | glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity | 0.008081133 | 1 | 7 |
Module129 | 26 | 79 | GO:0004332 | molecular_function | fructose-bisphosphate aldolase activity | 0.008081133 | 1 | 7 |
Module129 | 26 | 80 | GO:0030076 | cellular_component | light-harvesting complex | 0.009443696 | 1 | 4 |
Module129 | 26 | 81 | GO:0098807 | cellular_component | chloroplast thylakoid membrane protein complex | 0.009443696 | 1 | 4 |
Module129 | 26 | 82 | GO:0050896 | biological_process | response to stimulus | 0.010547345 | 12 | 3528 |
Module129 | 26 | 83 | GO:0035303 | biological_process | regulation of dephosphorylation | 0.010640165 | 1 | 6 |
Module129 | 26 | 84 | GO:0035304 | biological_process | regulation of protein dephosphorylation | 0.010640165 | 1 | 6 |
Module129 | 26 | 85 | GO:0046906 | molecular_function | tetrapyrrole binding | 0.013992205 | 3 | 446 |
Module129 | 26 | 86 | GO:0019253 | biological_process | reductive pentose-phosphate cycle | 0.015919477 | 1 | 9 |
Module129 | 26 | 87 | GO:0019685 | biological_process | photosynthesis, dark reaction | 0.015919477 | 1 | 9 |
Module129 | 26 | 88 | GO:0016832 | molecular_function | aldehyde-lyase activity | 0.016100372 | 1 | 14 |
Module129 | 26 | 89 | GO:0009533 | cellular_component | chloroplast stromal thylakoid | 0.018801744 | 1 | 8 |
Module129 | 26 | 90 | GO:1901401 | biological_process | regulation of tetrapyrrole metabolic process | 0.021171786 | 1 | 12 |
Module129 | 26 | 91 | GO:0043155 | biological_process | negative regulation of photosynthesis, light reaction | 0.022916578 | 1 | 13 |
Module129 | 26 | 92 | GO:0010205 | biological_process | photoinhibition | 0.022916578 | 1 | 13 |
Module129 | 26 | 93 | GO:0010207 | biological_process | photosystem II assembly | 0.022916578 | 1 | 13 |
Module129 | 26 | 94 | GO:0044464 | cellular_component | cell part | 0.023149636 | 25 | 9079 |
Module129 | 26 | 95 | GO:0005623 | cellular_component | cell | 0.023149636 | 25 | 9079 |
Module129 | 26 | 96 | GO:0080167 | biological_process | response to karrikin | 0.023479065 | 2 | 134 |
Module129 | 26 | 97 | GO:0009750 | biological_process | response to fructose | 0.026397224 | 1 | 15 |
Module129 | 26 | 98 | GO:0008047 | molecular_function | enzyme activator activity | 0.028578059 | 1 | 25 |
Module129 | 26 | 99 | GO:0015977 | biological_process | carbon fixation | 0.035046931 | 1 | 20 |
Module129 | 26 | 100 | GO:0005488 | molecular_function | binding | 0.037865006 | 17 | 11313 |
Module129 | 26 | 101 | GO:0006109 | biological_process | regulation of carbohydrate metabolic process | 0.038486152 | 1 | 22 |
Module129 | 26 | 102 | GO:1990204 | cellular_component | oxidoreductase complex | 0.038615254 | 2 | 132 |
Module129 | 26 | 103 | GO:0015995 | biological_process | chlorophyll biosynthetic process | 0.041913625 | 1 | 24 |
Module129 | 26 | 104 | GO:0016709 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 0.044242016 | 1 | 39 |
Module129 | 26 | 105 | GO:0005509 | molecular_function | calcium ion binding | 0.046455297 | 2 | 300 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
lhcb2 | AC190623.3_FG001 | 0.0396 |
lhcb2 | GRMZM2G010884 | 0.042 |
lhcb2 | psa6 | 0.0376 |
lhcb2 | GRMZM2G013342 | 0.0368 |
lhcb2 | GRMZM2G016066 | 0.0404 |
lhcb2 | GRMZM2G025954 | 0.0363 |
lhcb2 | psb29 | 0.0483 |
lhcb2 | GRMZM2G047954 | 0.0362 |
lhcb2 | GRMZM2G057281 | 0.043 |
lhcb2 | psan1 | 0.041 |
lhcb2 | GRMZM2G081462 | 0.0411 |
lhcb2 | GRMZM2G092311 | 0.0497 |
lhcb2 | lhcb6 | 0.0372 |
lhcb2 | lhcb5 | 0.0418 |
lhcb2 | GRMZM2G153184 | 0.0385 |
lhcb2 | lhcb3 | 0.051 |
lhcb2 | GRMZM2G160268 | 0.044 |
lhcb2 | oec33 | 0.0388 |
lhcb2 | gpa1 | 0.0365 |
lhcb2 | lhcb7 | 0.053 |
AC190623.3_FG001 | psb29 | 0.0375 |
GRMZM2G010884 | GRMZM2G001653 | 0.0363 |
GRMZM2G010884 | psa6 | 0.0356 |
GRMZM2G010884 | psb29 | 0.0399 |
GRMZM2G010884 | psan1 | 0.0355 |
GRMZM2G010884 | GRMZM2G092311 | 0.0398 |
GRMZM2G010884 | lhcb5 | 0.0363 |
GRMZM2G010884 | lhcb3 | 0.0429 |
GRMZM2G010884 | GRMZM2G160268 | 0.0382 |
GRMZM2G010884 | gpa1 | 0.0356 |
GRMZM2G010884 | lhcb7 | 0.0414 |
GRMZM2G001653 | psan1 | 0.0362 |
GRMZM2G001653 | lhcb3 | 0.0376 |
GRMZM2G001653 | GRMZM2G160268 | 0.036 |
GRMZM2G001653 | gpa1 | 0.035 |
GRMZM2G001653 | lhcb7 | 0.0371 |
psa6 | GRMZM2G092311 | 0.035 |
psa6 | oec33 | 0.0368 |
psa6 | lhcb7 | 0.0407 |
GRMZM2G016066 | psb29 | 0.0373 |
GRMZM2G016066 | psan1 | 0.0384 |
GRMZM2G025954 | psb29 | 0.0378 |
psb29 | GRMZM2G057281 | 0.0366 |
psb29 | GRMZM2G081462 | 0.0369 |
psb29 | GRMZM2G092311 | 0.0447 |
psb29 | lhcb6 | 0.0439 |
psb29 | lhcb5 | 0.0391 |
psb29 | GRMZM2G153184 | 0.035 |
psb29 | lhcb3 | 0.0458 |
psb29 | GRMZM2G160268 | 0.0394 |
psb29 | oec33 | 0.0351 |
psb29 | lhcb7 | 0.0425 |
GRMZM2G047954 | psan1 | 0.0359 |
GRMZM2G057281 | lhcb6 | 0.0375 |
GRMZM2G057281 | lhcb3 | 0.0402 |
GRMZM2G057281 | lhcb7 | 0.0401 |
psan1 | GRMZM2G160268 | 0.0363 |
GRMZM2G081462 | lhcb5 | 0.0351 |
GRMZM2G092311 | lhcb5 | 0.0383 |
GRMZM2G092311 | lhcb3 | 0.0384 |
GRMZM2G092311 | GRMZM2G160268 | 0.035 |
GRMZM2G092311 | oec33 | 0.0364 |
GRMZM2G092311 | lhcb7 | 0.0424 |
lhcb6 | lhcb5 | 0.0373 |
lhcb6 | lhcb3 | 0.0426 |
lhcb6 | GRMZM2G160268 | 0.0365 |
lhcb6 | lhcb7 | 0.0403 |
lhcb5 | lhcb3 | 0.0413 |
lhcb5 | GRMZM2G160268 | 0.0397 |
lhcb5 | lhcb7 | 0.0371 |
lhcb5 | GRMZM6G910544 | 0.0366 |
GRMZM2G153184 | lhcb3 | 0.035 |
GRMZM2G153184 | lhcb7 | 0.0386 |
lhcb3 | col12 | 0.0381 |
lhcb3 | GRMZM2G160268 | 0.0424 |
lhcb3 | lhcb7 | 0.0497 |
lhcb3 | GRMZM6G910544 | 0.0359 |
GRMZM2G160268 | GRMZM2G072280 | 0.0365 |
GRMZM2G160268 | lhcb7 | 0.0382 |
oec33 | lhcb7 | 0.0388 |
gpa1 | pzb01301 | 0.0352 |
gpa1 | lhcb7 | 0.036 |