This page contains information for Module135, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G036554 | bhlh153 | Module135 | AT2G22770 | NAI1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH | |
GRMZM2G047368 | pip2f | Module135 | AT2G37170 | PIP2B | plasma membrane intrinsic protein 2 | plasma membrane intrinsic protein 2 | |
GRMZM2G027098 | tip2a | Module135 | AT5G47450 | TIP2;3 | tonoplast intrinsic protein 2;3 | tonoplast intrinsic protein 2;3 | |
GRMZM2G018612 | Module135 | AT2G26170 | CYP711A1 | cytochrome P450, family 711, subfamily A, polypeptide 1 | cytochrome P450, family 711, subfamily A, polypeptide 1 | ||
GRMZM2G064091 | Module135 | AT2G26690 | AT2G26690 | Major facilitator superfamily protein | |||
GRMZM2G081192 | pip2c | Module135 | AT2G37170 | PIP2B | plasma membrane intrinsic protein 2 | plasma membrane intrinsic protein 2 | |
GRMZM2G081843 | pip1e | Module135 | AT4G23400 | PIP1;5 | plasma membrane intrinsic protein 1;5 | plasma membrane intrinsic protein 1;5 | |
GRMZM2G082434 | Module135 | AT1G77380 | AAP3 | amino acid permease 3 | amino acid permease 3 | ||
GRMZM2G109515 | Module135 | ||||||
GRMZM2G127789 | gst29 | Module135 | AT3G09270 | GSTU8 | glutathione S-transferase TAU 8 | glutathione S-transferase TAU 8 | |
GRMZM2G136032 | pip1f | Module135 | AT4G00430 | PIP1;4 | plasma membrane intrinsic protein 1;4 | plasma membrane intrinsic protein 1;4 | |
GRMZM2G137108 | nip2b | Module135 | AT5G37810 | NIP4;1 | NOD26-like intrinsic protein 4;1 | NOD26-like intrinsic protein 4;1 | |
GRMZM2G145655 | Module135 | AT2G38640 | AT2G38640 | Protein of unknown function (DUF567) | |||
GRMZM2G087503 | Module135 | AT1G78110 | AT1G78110 | ||||
GRMZM2G154628 | pip2d | Module135 | AT2G37170 | PIP2B | plasma membrane intrinsic protein 2 | plasma membrane intrinsic protein 2 | |
GRMZM2G178693 | pip2a | Module135 | AT2G37170 | PIP2B | plasma membrane intrinsic protein 2 | plasma membrane intrinsic protein 2 | |
GRMZM2G361115 | Module135 | AT3G17580 | AT3G17580 | ||||
GRMZM2G447151 | Module135 | AT1G56150 | AT1G56150 | SAUR-like auxin-responsive protein family | |||
GRMZM2G010673 | Module135 | AT1G33055 | AT1G33055 | ||||
GRMZM2G095261 | Module135 | AT1G07250 | UGT71C4 | UDP-glucosyl transferase 71C4 | UDP-glucosyl transferase 71C4 | ||
GRMZM2G451097 | Module135 | AT4G11290 | AT4G11290 | Peroxidase superfamily protein | |||
GRMZM5G827496 | Module135 | AT1G68570 | AT1G68570 | Major facilitator superfamily protein | |||
GRMZM2G361652 | Module135 | AT1G68570 | AT1G68570 | Major facilitator superfamily protein | |||
GRMZM5G873917 | Module135 | AT2G36220 | AT2G36220 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module135 | 24 | 1 | GO:0006833 | biological_process | water transport | 1.18E-14 | 6 | 17 |
Module135 | 24 | 2 | GO:0042044 | biological_process | fluid transport | 1.18E-14 | 6 | 17 |
Module135 | 24 | 3 | GO:0080170 | biological_process | hydrogen peroxide transmembrane transport | 1.98E-11 | 4 | 6 |
Module135 | 24 | 4 | GO:0005215 | molecular_function | transporter activity | 2.31E-10 | 11 | 959 |
Module135 | 24 | 5 | GO:0006810 | biological_process | transport | 3.51E-09 | 13 | 1919 |
Module135 | 24 | 6 | GO:0051234 | biological_process | establishment of localization | 3.77E-09 | 13 | 1930 |
Module135 | 24 | 7 | GO:0051179 | biological_process | localization | 5.10E-09 | 13 | 1977 |
Module135 | 24 | 8 | GO:0009269 | biological_process | response to desiccation | 1.95E-08 | 4 | 26 |
Module135 | 24 | 9 | GO:0009414 | biological_process | response to water deprivation | 2.23E-07 | 6 | 243 |
Module135 | 24 | 10 | GO:0009415 | biological_process | response to water | 2.76E-07 | 6 | 252 |
Module135 | 24 | 11 | GO:0044765 | biological_process | single-organism transport | 8.12E-07 | 10 | 1438 |
Module135 | 24 | 12 | GO:1902578 | biological_process | single-organism localization | 9.74E-07 | 10 | 1466 |
Module135 | 24 | 13 | GO:0009624 | biological_process | response to nematode | 3.04E-06 | 4 | 89 |
Module135 | 24 | 14 | GO:0016021 | cellular_component | integral component of membrane | 6.66E-06 | 9 | 1436 |
Module135 | 24 | 15 | GO:0031224 | cellular_component | intrinsic component of membrane | 9.53E-06 | 9 | 1498 |
Module135 | 24 | 16 | GO:0006970 | biological_process | response to osmotic stress | 1.79E-05 | 6 | 517 |
Module135 | 24 | 17 | GO:0005773 | cellular_component | vacuole | 2.18E-05 | 7 | 838 |
Module135 | 24 | 18 | GO:0010035 | biological_process | response to inorganic substance | 2.28E-05 | 7 | 829 |
Module135 | 24 | 19 | GO:0005372 | molecular_function | water transmembrane transporter activity | 5.53E-05 | 2 | 11 |
Module135 | 24 | 20 | GO:0015250 | molecular_function | water channel activity | 5.53E-05 | 2 | 11 |
Module135 | 24 | 21 | GO:0044425 | cellular_component | membrane part | 6.79E-05 | 9 | 1895 |
Module135 | 24 | 22 | GO:0001101 | biological_process | response to acid chemical | 0.00010308 | 6 | 706 |
Module135 | 24 | 23 | GO:0042221 | biological_process | response to chemical | 0.000293166 | 8 | 1681 |
Module135 | 24 | 24 | GO:1901700 | biological_process | response to oxygen-containing compound | 0.000414862 | 6 | 910 |
Module135 | 24 | 25 | GO:0016020 | cellular_component | membrane | 0.000481261 | 12 | 4716 |
Module135 | 24 | 26 | GO:0009737 | biological_process | response to abscisic acid | 0.000699204 | 4 | 359 |
Module135 | 24 | 27 | GO:0009628 | biological_process | response to abiotic stimulus | 0.000709593 | 7 | 1427 |
Module135 | 24 | 28 | GO:0097305 | biological_process | response to alcohol | 0.001128227 | 4 | 408 |
Module135 | 24 | 29 | GO:0060918 | biological_process | auxin transport | 0.001270062 | 2 | 45 |
Module135 | 24 | 30 | GO:0009914 | biological_process | hormone transport | 0.001326874 | 2 | 46 |
Module135 | 24 | 31 | GO:0055085 | biological_process | transmembrane transport | 0.001511972 | 5 | 766 |
Module135 | 24 | 32 | GO:0033993 | biological_process | response to lipid | 0.001569371 | 4 | 446 |
Module135 | 24 | 33 | GO:0009725 | biological_process | response to hormone | 0.001735299 | 5 | 790 |
Module135 | 24 | 34 | GO:0031225 | cellular_component | anchored component of membrane | 0.001863244 | 2 | 53 |
Module135 | 24 | 35 | GO:0046658 | cellular_component | anchored component of plasma membrane | 0.001863244 | 2 | 53 |
Module135 | 24 | 36 | GO:0009605 | biological_process | response to external stimulus | 0.00198236 | 5 | 814 |
Module135 | 24 | 37 | GO:0009719 | biological_process | response to endogenous stimulus | 0.002149504 | 5 | 829 |
Module135 | 24 | 38 | GO:0022838 | molecular_function | substrate-specific channel activity | 0.002544113 | 2 | 73 |
Module135 | 24 | 39 | GO:0022803 | molecular_function | passive transmembrane transporter activity | 0.002544113 | 2 | 73 |
Module135 | 24 | 40 | GO:0015267 | molecular_function | channel activity | 0.002544113 | 2 | 73 |
Module135 | 24 | 41 | GO:0031226 | cellular_component | intrinsic component of plasma membrane | 0.002960642 | 2 | 67 |
Module135 | 24 | 42 | GO:0009963 | biological_process | positive regulation of flavonoid biosynthetic process | 0.003557924 | 1 | 3 |
Module135 | 24 | 43 | GO:0010033 | biological_process | response to organic substance | 0.004105579 | 5 | 961 |
Module135 | 24 | 44 | GO:0005275 | molecular_function | amine transmembrane transporter activity | 0.004139269 | 1 | 4 |
Module135 | 24 | 45 | GO:0015200 | molecular_function | methylammonium transmembrane transporter activity | 0.004139269 | 1 | 4 |
Module135 | 24 | 46 | GO:0043207 | biological_process | response to external biotic stimulus | 0.004531975 | 4 | 597 |
Module135 | 24 | 47 | GO:0051707 | biological_process | response to other organism | 0.004531975 | 4 | 597 |
Module135 | 24 | 48 | GO:0072489 | biological_process | methylammonium transmembrane transport | 0.004741259 | 1 | 4 |
Module135 | 24 | 49 | GO:0009607 | biological_process | response to biotic stimulus | 0.005186447 | 4 | 620 |
Module135 | 24 | 50 | GO:0009507 | cellular_component | chloroplast | 0.005593942 | 7 | 2032 |
Module135 | 24 | 51 | GO:0015843 | biological_process | methylammonium transport | 0.005923277 | 1 | 5 |
Module135 | 24 | 52 | GO:0015837 | biological_process | amine transport | 0.005923277 | 1 | 5 |
Module135 | 24 | 53 | GO:0005886 | cellular_component | plasma membrane | 0.005972058 | 7 | 2055 |
Module135 | 24 | 54 | GO:0015101 | molecular_function | organic cation transmembrane transporter activity | 0.006202851 | 1 | 6 |
Module135 | 24 | 55 | GO:0006950 | biological_process | response to stress | 0.006271194 | 7 | 2065 |
Module135 | 24 | 56 | GO:0010817 | biological_process | regulation of hormone levels | 0.006352826 | 2 | 102 |
Module135 | 24 | 57 | GO:0009536 | cellular_component | plastid | 0.007566925 | 7 | 2141 |
Module135 | 24 | 58 | GO:0015695 | biological_process | organic cation transport | 0.009461438 | 1 | 8 |
Module135 | 24 | 59 | GO:0050896 | biological_process | response to stimulus | 0.01025584 | 9 | 3528 |
Module135 | 24 | 60 | GO:0044459 | cellular_component | plasma membrane part | 0.010589531 | 2 | 129 |
Module135 | 24 | 61 | GO:0010223 | biological_process | secondary shoot formation | 0.010638199 | 1 | 9 |
Module135 | 24 | 62 | GO:0019755 | biological_process | one-carbon compound transport | 0.010638199 | 1 | 9 |
Module135 | 24 | 63 | GO:0010346 | biological_process | shoot axis formation | 0.010638199 | 1 | 9 |
Module135 | 24 | 64 | GO:0008519 | molecular_function | ammonium transmembrane transporter activity | 0.011344213 | 1 | 11 |
Module135 | 24 | 65 | GO:0009956 | biological_process | radial pattern formation | 0.011813649 | 1 | 10 |
Module135 | 24 | 66 | GO:0001763 | biological_process | morphogenesis of a branching structure | 0.011813649 | 1 | 10 |
Module135 | 24 | 67 | GO:0072488 | biological_process | ammonium transmembrane transport | 0.011813649 | 1 | 10 |
Module135 | 24 | 68 | GO:0015696 | biological_process | ammonium transport | 0.011813649 | 1 | 10 |
Module135 | 24 | 69 | GO:0042807 | cellular_component | central vacuole | 0.012255905 | 1 | 10 |
Module135 | 24 | 70 | GO:0009962 | biological_process | regulation of flavonoid biosynthetic process | 0.014160623 | 1 | 12 |
Module135 | 24 | 71 | GO:0009934 | biological_process | regulation of meristem structural organization | 0.014160623 | 1 | 12 |
Module135 | 24 | 72 | GO:0071705 | biological_process | nitrogen compound transport | 0.014894242 | 2 | 159 |
Module135 | 24 | 73 | GO:0071944 | cellular_component | cell periphery | 0.016358335 | 7 | 2455 |
Module135 | 24 | 74 | GO:0051704 | biological_process | multi-organism process | 0.019046619 | 4 | 903 |
Module135 | 24 | 75 | GO:0009958 | biological_process | positive gravitropism | 0.024657483 | 1 | 21 |
Module135 | 24 | 76 | GO:0022891 | molecular_function | substrate-specific transmembrane transporter activity | 0.025125053 | 3 | 625 |
Module135 | 24 | 77 | GO:0022892 | molecular_function | substrate-specific transporter activity | 0.03341354 | 3 | 698 |
Module135 | 24 | 78 | GO:0006857 | biological_process | oligopeptide transport | 0.035049493 | 1 | 30 |
Module135 | 24 | 79 | GO:0009813 | biological_process | flavonoid biosynthetic process | 0.036197731 | 1 | 31 |
Module135 | 24 | 80 | GO:0016049 | biological_process | cell growth | 0.036982953 | 2 | 259 |
Module135 | 24 | 81 | GO:0015833 | biological_process | peptide transport | 0.037344688 | 1 | 32 |
Module135 | 24 | 82 | GO:0004364 | molecular_function | glutathione transferase activity | 0.037678197 | 1 | 37 |
Module135 | 24 | 83 | GO:0022857 | molecular_function | transmembrane transporter activity | 0.04051017 | 3 | 753 |
Module135 | 24 | 84 | GO:0009926 | biological_process | auxin polar transport | 0.040777886 | 1 | 35 |
Module135 | 24 | 85 | GO:0022622 | biological_process | root system development | 0.042341703 | 2 | 279 |
Module135 | 24 | 86 | GO:0048364 | biological_process | root development | 0.042341703 | 2 | 279 |
Module135 | 24 | 87 | GO:0048767 | biological_process | root hair elongation | 0.046474386 | 1 | 40 |
Module135 | 24 | 88 | GO:0042886 | biological_process | amide transport | 0.049877046 | 1 | 43 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
bhlh153 | GRMZM5G827496 | 0.036 |
pip2f | tip2a | 0.0414 |
pip2f | GRMZM2G064091 | 0.0699 |
pip2f | pip1e | 0.0362 |
pip2f | pip2a | 0.0461 |
pip2f | GRMZM5G827496 | 0.037 |
tip2a | pip2c | 0.0401 |
GRMZM2G018612 | GRMZM2G447151 | 0.0373 |
GRMZM2G064091 | GRMZM2G082434 | 0.0373 |
GRMZM2G064091 | nip2b | 0.0443 |
GRMZM2G064091 | GRMZM2G145655 | 0.0405 |
GRMZM2G064091 | pip2a | 0.0451 |
GRMZM2G064091 | GRMZM2G447151 | 0.1 |
GRMZM2G064091 | GRMZM5G827496 | 0.0808 |
pip2c | pip2d | 0.0501 |
pip2c | pip2a | 0.0366 |
pip1e | pip1f | 0.0512 |
pip1e | pip2d | 0.0362 |
GRMZM2G109515 | pip1f | 0.036 |
gst29 | pip1f | 0.0366 |
pip1f | pip2a | 0.0471 |
GRMZM2G145655 | GRMZM2G087503 | 0.0453 |
GRMZM2G145655 | pip2a | 0.0522 |
GRMZM2G145655 | GRMZM2G361115 | 0.0396 |
GRMZM2G087503 | GRMZM5G873917 | 0.0393 |
pip2d | pip2a | 0.0424 |
GRMZM2G447151 | GRMZM2G010673 | 0.0479 |
GRMZM2G447151 | GRMZM2G095261 | 0.0388 |
GRMZM2G451097 | GRMZM5G827496 | 0.0543 |
GRMZM5G827496 | GRMZM2G361652 | 0.0378 |