This page contains information for Module140, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G030293 | Module140 | AT5G64140 | RPS28 | ribosomal protein S28 | ribosomal protein S28 | ||
GRMZM2G024354 | Module140 | AT4G16720 | AT4G16720 | Ribosomal protein L23/L15e family protein | |||
AC190609.3_FG002 | Module140 | AT2G43460 | AT2G43460 | Ribosomal L38e protein family | |||
GRMZM2G047971 | Module140 | AT4G18100 | AT4G18100 | Ribosomal protein L32e | |||
GRMZM2G065868 | Module140 | AT4G18100 | AT4G18100 | Ribosomal protein L32e | |||
GRMZM2G069594 | Module140 | AT2G43460 | AT2G43460 | Ribosomal L38e protein family | |||
GRMZM2G075630 | Module140 | AT2G27710 | AT2G27710 | 60S acidic ribosomal protein family | |||
GRMZM2G088511 | Module140 | ||||||
GRMZM2G009412 | Module140 | AT3G23390 | AT3G23390 | Zinc-binding ribosomal protein family protein | |||
GRMZM2G016928 | Module140 | AT3G10950 | AT3G10950 | Zinc-binding ribosomal protein family protein | |||
GRMZM2G123831 | Module140 | AT2G45860 | AT2G45860 | ||||
GRMZM2G095657 | Module140 | AT3G52040 | AT3G52040 | ||||
GRMZM2G124143 | Module140 | AT5G64140 | RPS28 | ribosomal protein S28 | ribosomal protein S28 | ||
GRMZM2G140116 | Module140 | AT4G27090 | AT4G27090 | Ribosomal protein L14 | |||
GRMZM2G152573 | Module140 | AT1G26880 | AT1G26880 | Ribosomal protein L34e superfamily protein | |||
GRMZM2G155931 | Module140 | AT4G18100 | AT4G18100 | Ribosomal protein L32e | |||
GRMZM2G165208 | Module140 | AT3G43980 | AT3G43980 | Ribosomal protein S14p/S29e family protein | |||
GRMZM2G172342 | Module140 | AT1G07070 | AT1G07070 | Ribosomal protein L35Ae family protein | |||
GRMZM2G305154 | Module140 | AT3G43980 | AT3G43980 | Ribosomal protein S14p/S29e family protein | |||
GRMZM2G455828 | Module140 | AT5G64140 | RPS28 | ribosomal protein S28 | ribosomal protein S28 | ||
GRMZM2G116135 | Module140 | AT1G02780 | emb2386 | embryo defective 2386 | Ribosomal protein L19e family protein | ||
GRMZM2G556667 | Module140 | ||||||
GRMZM5G813584 | Module140 | AT2G42740 | RPL16A | ribosomal protein large subunit 16A | ribosomal protein large subunit 16A |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module140 | 23 | 1 | GO:0003735 | molecular_function | structural constituent of ribosome | 1.36E-29 | 19 | 505 |
Module140 | 23 | 2 | GO:0005198 | molecular_function | structural molecule activity | 3.80E-28 | 19 | 600 |
Module140 | 23 | 3 | GO:0006412 | biological_process | translation | 2.56E-24 | 19 | 781 |
Module140 | 23 | 4 | GO:0043043 | biological_process | peptide biosynthetic process | 3.11E-24 | 19 | 789 |
Module140 | 23 | 5 | GO:0005840 | cellular_component | ribosome | 3.45E-24 | 19 | 623 |
Module140 | 23 | 6 | GO:0006518 | biological_process | peptide metabolic process | 5.41E-24 | 19 | 812 |
Module140 | 23 | 7 | GO:0043604 | biological_process | amide biosynthetic process | 6.85E-24 | 19 | 822 |
Module140 | 23 | 8 | GO:0043603 | biological_process | cellular amide metabolic process | 1.91E-23 | 19 | 867 |
Module140 | 23 | 9 | GO:0044391 | cellular_component | ribosomal subunit | 2.35E-23 | 16 | 273 |
Module140 | 23 | 10 | GO:1990904 | cellular_component | ribonucleoprotein complex | 5.75E-23 | 19 | 721 |
Module140 | 23 | 11 | GO:0030529 | cellular_component | intracellular ribonucleoprotein complex | 5.75E-23 | 19 | 721 |
Module140 | 23 | 12 | GO:0022626 | cellular_component | cytosolic ribosome | 2.57E-22 | 16 | 316 |
Module140 | 23 | 13 | GO:0044445 | cellular_component | cytosolic part | 1.12E-21 | 16 | 346 |
Module140 | 23 | 14 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 5.58E-20 | 19 | 1315 |
Module140 | 23 | 15 | GO:0043228 | cellular_component | non-membrane-bounded organelle | 7.56E-18 | 19 | 1333 |
Module140 | 23 | 16 | GO:0043232 | cellular_component | intracellular non-membrane-bounded organelle | 7.56E-18 | 19 | 1333 |
Module140 | 23 | 17 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 1.80E-17 | 19 | 1779 |
Module140 | 23 | 18 | GO:0022625 | cellular_component | cytosolic large ribosomal subunit | 5.81E-17 | 11 | 133 |
Module140 | 23 | 19 | GO:0015934 | cellular_component | large ribosomal subunit | 5.78E-16 | 11 | 163 |
Module140 | 23 | 20 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 1.25E-14 | 19 | 2507 |
Module140 | 23 | 21 | GO:0010467 | biological_process | gene expression | 1.30E-14 | 19 | 2512 |
Module140 | 23 | 22 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 1.45E-14 | 19 | 2526 |
Module140 | 23 | 23 | GO:0009059 | biological_process | macromolecule biosynthetic process | 1.47E-14 | 19 | 2528 |
Module140 | 23 | 24 | GO:0032991 | cellular_component | macromolecular complex | 1.51E-14 | 19 | 1984 |
Module140 | 23 | 25 | GO:0044267 | biological_process | cellular protein metabolic process | 9.18E-14 | 19 | 2783 |
Module140 | 23 | 26 | GO:0019538 | biological_process | protein metabolic process | 1.67E-12 | 19 | 3241 |
Module140 | 23 | 27 | GO:0005829 | cellular_component | cytosol | 2.24E-12 | 16 | 1321 |
Module140 | 23 | 28 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 9.24E-12 | 19 | 3545 |
Module140 | 23 | 29 | GO:0044249 | biological_process | cellular biosynthetic process | 9.29E-12 | 19 | 3546 |
Module140 | 23 | 30 | GO:1901576 | biological_process | organic substance biosynthetic process | 1.28E-11 | 19 | 3606 |
Module140 | 23 | 31 | GO:0009058 | biological_process | biosynthetic process | 2.84E-11 | 19 | 3760 |
Module140 | 23 | 32 | GO:0006807 | biological_process | nitrogen compound metabolic process | 5.34E-11 | 19 | 3887 |
Module140 | 23 | 33 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 5.55E-09 | 19 | 4961 |
Module140 | 23 | 34 | GO:0043170 | biological_process | macromolecule metabolic process | 3.72E-08 | 19 | 5482 |
Module140 | 23 | 35 | GO:0022627 | cellular_component | cytosolic small ribosomal subunit | 1.39E-07 | 5 | 72 |
Module140 | 23 | 36 | GO:0005730 | cellular_component | nucleolus | 4.47E-07 | 8 | 442 |
Module140 | 23 | 37 | GO:0044446 | cellular_component | intracellular organelle part | 8.88E-07 | 16 | 3055 |
Module140 | 23 | 38 | GO:0044422 | cellular_component | organelle part | 9.10E-07 | 16 | 3060 |
Module140 | 23 | 39 | GO:0015935 | cellular_component | small ribosomal subunit | 1.22E-06 | 5 | 111 |
Module140 | 23 | 40 | GO:0044444 | cellular_component | cytoplasmic part | 3.04E-06 | 19 | 5412 |
Module140 | 23 | 41 | GO:0044237 | biological_process | cellular metabolic process | 4.49E-06 | 19 | 7053 |
Module140 | 23 | 42 | GO:0031981 | cellular_component | nuclear lumen | 4.56E-06 | 8 | 601 |
Module140 | 23 | 43 | GO:0070013 | cellular_component | intracellular organelle lumen | 9.78E-06 | 8 | 666 |
Module140 | 23 | 44 | GO:0043233 | cellular_component | organelle lumen | 9.78E-06 | 8 | 666 |
Module140 | 23 | 45 | GO:0044238 | biological_process | primary metabolic process | 1.02E-05 | 19 | 7365 |
Module140 | 23 | 46 | GO:0031974 | cellular_component | membrane-enclosed lumen | 1.07E-05 | 8 | 674 |
Module140 | 23 | 47 | GO:0005737 | cellular_component | cytoplasm | 1.57E-05 | 19 | 5900 |
Module140 | 23 | 48 | GO:0044428 | cellular_component | nuclear part | 2.08E-05 | 8 | 738 |
Module140 | 23 | 49 | GO:0071704 | biological_process | organic substance metabolic process | 3.03E-05 | 19 | 7797 |
Module140 | 23 | 50 | GO:0043229 | cellular_component | intracellular organelle | 0.000159026 | 19 | 6663 |
Module140 | 23 | 51 | GO:0043226 | cellular_component | organelle | 0.000159937 | 19 | 6665 |
Module140 | 23 | 52 | GO:0009987 | biological_process | cellular process | 0.000963777 | 19 | 9353 |
Module140 | 23 | 53 | GO:0008152 | biological_process | metabolic process | 0.002462919 | 19 | 9826 |
Module140 | 23 | 54 | GO:0044424 | cellular_component | intracellular part | 0.002586113 | 19 | 7715 |
Module140 | 23 | 55 | GO:0005622 | cellular_component | intracellular | 0.006469312 | 19 | 8096 |
Module140 | 23 | 56 | GO:0005634 | cellular_component | nucleus | 0.049706913 | 8 | 2423 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G030293 | GRMZM2G024354 | 0.0384 |
GRMZM2G030293 | GRMZM2G124143 | 0.0373 |
GRMZM2G030293 | GRMZM2G455828 | 0.0368 |
AC190609.3_FG002 | GRMZM2G069594 | 0.037 |
AC190609.3_FG002 | GRMZM2G123831 | 0.036 |
AC190609.3_FG002 | GRMZM2G155931 | 0.0366 |
AC190609.3_FG002 | GRMZM2G305154 | 0.0366 |
AC190609.3_FG002 | GRMZM2G455828 | 0.0402 |
GRMZM2G047971 | GRMZM2G065868 | 0.0362 |
GRMZM2G065868 | GRMZM2G155931 | 0.0362 |
GRMZM2G075630 | GRMZM2G455828 | 0.0405 |
GRMZM2G088511 | GRMZM2G009412 | 0.0385 |
GRMZM2G088511 | GRMZM2G016928 | 0.038 |
GRMZM2G088511 | GRMZM2G152573 | 0.0448 |
GRMZM2G088511 | GRMZM2G165208 | 0.0405 |
GRMZM2G088511 | GRMZM2G172342 | 0.0384 |
GRMZM2G088511 | GRMZM2G455828 | 0.0438 |
GRMZM2G009412 | GRMZM2G152573 | 0.0352 |
GRMZM2G016928 | GRMZM2G140116 | 0.0418 |
GRMZM2G016928 | GRMZM2G165208 | 0.0358 |
GRMZM2G016928 | GRMZM2G455828 | 0.0391 |
GRMZM2G016928 | GRMZM5G813584 | 0.0396 |
GRMZM2G123831 | GRMZM2G095657 | 0.0393 |
GRMZM2G124143 | GRMZM2G455828 | 0.0362 |
GRMZM2G124143 | GRMZM2G556667 | 0.0367 |
GRMZM2G152573 | GRMZM2G455828 | 0.0357 |
GRMZM2G305154 | GRMZM2G455828 | 0.0391 |
GRMZM2G455828 | GRMZM2G116135 | 0.0387 |