This page contains information for Module144, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC198352.4_FG005 | Module144 | ||||||
AC226243.1_FG003 | Module144 | AT3G42725 | AT3G42725 | Putative membrane lipoprotein | |||
GRMZM2G004617 | Module144 | AT1G21880 | LYM1 | lysm domain GPI-anchored protein 1 precursor | lysm domain GPI-anchored protein 1 precursor | ||
GRMZM2G017643 | Module144 | AT1G21090 | AT1G21090 | Cupredoxin superfamily protein | |||
GRMZM2G024155 | Module144 | ||||||
GRMZM2G038674 | Module144 | ||||||
GRMZM2G045977 | grftf13 | Module144 | AT2G36400 | GRF3 | growth-regulating factor 3 | growth-regulating factor 3 | GRF |
GRMZM2G063426 | Module144 | AT3G17950 | AT3G17950 | ||||
GRMZM2G114788 | Module144 | ||||||
GRMZM2G121706 | ofp3 | Module144 | AT2G18500 | OFP7 | ovate family protein 7 | ovate family protein 7 | OFP |
GRMZM2G123909 | gata35 | Module144 | AT4G36620 | GATA19 | GATA transcription factor 19 | GATA transcription factor 19 | C2C2-GATA |
GRMZM2G014499 | Module144 | AT5G45650 | AT5G45650 | subtilase family protein | |||
GRMZM2G124566 | grftf9 | Module144 | AT2G36400 | GRF3 | growth-regulating factor 3 | growth-regulating factor 3 | GRF |
GRMZM2G130354 | Module144 | AT5G66440 | AT5G66440 | ||||
GRMZM2G132862 | Module144 | ||||||
GRMZM2G140908 | Module144 | AT2G44580 | AT2G44580 | zinc ion binding | |||
GRMZM2G161233 | Module144 | AT3G23820 | GAE6 | UDP-D-glucuronate 4-epimerase 6 | UDP-D-glucuronate 4-epimerase 6 | ||
GRMZM2G350428 | Module144 | ||||||
GRMZM2G435744 | Module144 | ||||||
GRMZM2G459052 | Module144 | AT1G15760 | AT1G15760 | Sterile alpha motif (SAM) domain-containing protein | |||
GRMZM2G531719 | Module144 | ||||||
GRMZM5G819222 | Module144 | AT5G13140 | AT5G13140 | Pollen Ole e 1 allergen and extensin family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module144 | 22 | 1 | GO:0019222 | biological_process | regulation of metabolic process | 0.000632942 | 5 | 1761 |
Module144 | 22 | 2 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.002328154 | 4 | 1293 |
Module144 | 22 | 3 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.002328154 | 4 | 1293 |
Module144 | 22 | 4 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.002328154 | 4 | 1293 |
Module144 | 22 | 5 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.002403421 | 4 | 1304 |
Module144 | 22 | 6 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.002610169 | 4 | 1333 |
Module144 | 22 | 7 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.002923696 | 4 | 1374 |
Module144 | 22 | 8 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.002923696 | 4 | 1374 |
Module144 | 22 | 9 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.003194822 | 4 | 1407 |
Module144 | 22 | 10 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.003211808 | 4 | 1409 |
Module144 | 22 | 11 | GO:0010468 | biological_process | regulation of gene expression | 0.003254551 | 4 | 1414 |
Module144 | 22 | 12 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.003254551 | 4 | 1414 |
Module144 | 22 | 13 | GO:0006351 | biological_process | transcription, DNA-templated | 0.003254551 | 4 | 1414 |
Module144 | 22 | 14 | GO:0032774 | biological_process | RNA biosynthetic process | 0.003297697 | 4 | 1419 |
Module144 | 22 | 15 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.003323779 | 4 | 1422 |
Module144 | 22 | 16 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.004332047 | 4 | 1527 |
Module144 | 22 | 17 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.004384864 | 4 | 1532 |
Module144 | 22 | 18 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.004622674 | 4 | 1554 |
Module144 | 22 | 19 | GO:0050789 | biological_process | regulation of biological process | 0.00512171 | 5 | 2751 |
Module144 | 22 | 20 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.005137202 | 4 | 1599 |
Module144 | 22 | 21 | GO:0065007 | biological_process | biological regulation | 0.006793754 | 5 | 2926 |
Module144 | 22 | 22 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.007998521 | 4 | 1804 |
Module144 | 22 | 23 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.00821069 | 4 | 1817 |
Module144 | 22 | 24 | GO:0016070 | biological_process | RNA metabolic process | 0.008835933 | 4 | 1854 |
Module144 | 22 | 25 | GO:0009892 | biological_process | negative regulation of metabolic process | 0.009023403 | 2 | 290 |
Module144 | 22 | 26 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.010107858 | 4 | 1924 |
Module144 | 22 | 27 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.015963133 | 4 | 2185 |
Module144 | 22 | 28 | GO:0016998 | biological_process | cell wall macromolecule catabolic process | 0.019065978 | 1 | 37 |
Module144 | 22 | 29 | GO:0031225 | cellular_component | anchored component of membrane | 0.019941054 | 1 | 53 |
Module144 | 22 | 30 | GO:0046658 | cellular_component | anchored component of plasma membrane | 0.019941054 | 1 | 53 |
Module144 | 22 | 31 | GO:0043170 | biological_process | macromolecule metabolic process | 0.020634983 | 6 | 5482 |
Module144 | 22 | 32 | GO:0048519 | biological_process | negative regulation of biological process | 0.02081434 | 2 | 449 |
Module144 | 22 | 33 | GO:0050794 | biological_process | regulation of cellular process | 0.021636025 | 4 | 2381 |
Module144 | 22 | 34 | GO:0031226 | cellular_component | intrinsic component of plasma membrane | 0.025158335 | 1 | 67 |
Module144 | 22 | 35 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.025918046 | 4 | 2507 |
Module144 | 22 | 36 | GO:0010467 | biological_process | gene expression | 0.026098704 | 4 | 2512 |
Module144 | 22 | 37 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.026608988 | 4 | 2526 |
Module144 | 22 | 38 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.026682422 | 4 | 2528 |
Module144 | 22 | 39 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.029298775 | 4 | 2597 |
Module144 | 22 | 40 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated | 0.034295319 | 1 | 67 |
Module144 | 22 | 41 | GO:1903507 | biological_process | negative regulation of nucleic acid-templated transcription | 0.034295319 | 1 | 67 |
Module144 | 22 | 42 | GO:1902679 | biological_process | negative regulation of RNA biosynthetic process | 0.034295319 | 1 | 67 |
Module144 | 22 | 43 | GO:0051253 | biological_process | negative regulation of RNA metabolic process | 0.034799453 | 1 | 68 |
Module144 | 22 | 44 | GO:0046483 | biological_process | heterocycle metabolic process | 0.041096904 | 4 | 2866 |
Module144 | 22 | 45 | GO:0045934 | biological_process | negative regulation of nucleobase-containing compound metabolic process | 0.041833679 | 1 | 82 |
Module144 | 22 | 46 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.04322779 | 4 | 2909 |
Module144 | 22 | 47 | GO:0044036 | biological_process | cell wall macromolecule metabolic process | 0.044834869 | 1 | 88 |
Module144 | 22 | 48 | GO:0004252 | molecular_function | serine-type endopeptidase activity | 0.046014211 | 1 | 110 |
Module144 | 22 | 49 | GO:0016818 | molecular_function | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.046324303 | 2 | 840 |
Module144 | 22 | 50 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.047914015 | 4 | 2999 |
Module144 | 22 | 51 | GO:0044459 | cellular_component | plasma membrane part | 0.048013473 | 1 | 129 |
Module144 | 22 | 52 | GO:0016817 | molecular_function | hydrolase activity, acting on acid anhydrides | 0.048255137 | 2 | 859 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC198352.4_FG005 | GRMZM2G114788 | 0.0562 |
AC198352.4_FG005 | ofp3 | 0.0423 |
AC198352.4_FG005 | gata35 | 0.0885 |
AC198352.4_FG005 | GRMZM2G350428 | 0.0405 |
AC198352.4_FG005 | GRMZM2G435744 | 0.0493 |
AC226243.1_FG003 | GRMZM2G017643 | 0.0351 |
GRMZM2G004617 | GRMZM2G132862 | 0.0479 |
GRMZM2G017643 | GRMZM2G063426 | 0.0422 |
GRMZM2G017643 | gata35 | 0.0711 |
GRMZM2G024155 | grftf13 | 0.0444 |
GRMZM2G024155 | GRMZM2G114788 | 0.0626 |
GRMZM2G024155 | GRMZM2G350428 | 0.0379 |
GRMZM2G038674 | gata35 | 0.0512 |
grftf13 | grftf9 | 0.0373 |
GRMZM2G063426 | GRMZM2G161233 | 0.0529 |
ofp3 | GRMZM2G130354 | 0.0374 |
ofp3 | GRMZM2G161233 | 0.0368 |
gata35 | GRMZM2G014499 | 0.0387 |
gata35 | GRMZM2G130354 | 0.0399 |
gata35 | GRMZM2G132862 | 0.0523 |
gata35 | GRMZM2G435744 | 0.0462 |
gata35 | GRMZM2G531719 | 0.0476 |
GRMZM2G014499 | GRMZM2G161233 | 0.0394 |
GRMZM2G014499 | GRMZM2G459052 | 0.0399 |
GRMZM2G014499 | GRMZM5G819222 | 0.0393 |
GRMZM2G132862 | GRMZM2G140908 | 0.0374 |