This page contains information for Module147, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G002309 | Module147 | AT2G47820 | AT2G47820 | ||||
GRMZM2G037910 | bzip46 | Module147 | AT4G38900 | AT4G38900 | Basic-leucine zipper (bZIP) transcription factor family protein | bZIP | |
GRMZM2G043600 | bzip22 | Module147 | AT2G21230 | AT2G21230 | Basic-leucine zipper (bZIP) transcription factor family protein | bZIP | |
GRMZM2G047104 | Module147 | AT3G18380 | SHH2 | SAWADEE homeodomain homolog 2 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding | ||
GRMZM2G028366 | Module147 | AT1G54270 | EIF4A-2 | eif4a-2 | eif4a-2 | ||
GRMZM2G121546 | Module147 | AT2G27820 | PD1 | prephenate dehydratase 1 | prephenate dehydratase 1 | ||
GRMZM2G124708 | Module147 | ||||||
GRMZM2G319104 | Module147 | AT1G70060 | SNL4 | SIN3-like 4 | SIN3-like 4 | Orphans | |
GRMZM2G104795 | Module147 | AT3G18600 | AT3G18600 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | |||
GRMZM2G359105 | Module147 | AT3G51620 | AT3G51620 | PAP/OAS1 substrate-binding domain superfamily | |||
GRMZM2G368767 | Module147 | ||||||
GRMZM2G000404 | Module147 | AT4G24560 | UBP16 | ubiquitin-specific protease 16 | ubiquitin-specific protease 16 | ||
GRMZM2G370991 | Module147 | AT5G03280 | EIN2 | ETHYLENE INSENSITIVE 2 | NRAMP metal ion transporter family protein | ||
AC191534.3_FG003 | vim104 | Module147 | AT1G57820 | VIM1 | VARIANT IN METHYLATION 1 | Zinc finger (C3HC4-type RING finger) family protein | |
GRMZM2G391164 | fha8 | Module147 | AT3G07220 | FHA2 | forkhead-associated 2 | SMAD/FHA domain-containing protein | FHA |
GRMZM2G412075 | Module147 | AT2G36660 | PAB7 | poly(A) binding protein 7 | poly(A) binding protein 7 | ||
GRMZM2G418982 | Module147 | ||||||
GRMZM2G449489 | Module147 | AT4G28150 | AT4G28150 | Protein of unknown function (DUF789) | |||
GRMZM2G476175 | Module147 | ||||||
GRMZM5G887243 | Module147 | AT3G47680 | AT3G47680 | DNA binding | |||
GRMZM5G890815 | Module147 | AT3G51620 | AT3G51620 | PAP/OAS1 substrate-binding domain superfamily | |||
GRMZM6G272542 | Module147 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module147 | 22 | 1 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.001470396 | 4 | 1817 |
Module147 | 22 | 2 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.00183574 | 4 | 1924 |
Module147 | 22 | 3 | GO:0003676 | molecular_function | nucleic acid binding | 0.002861341 | 7 | 3117 |
Module147 | 22 | 4 | GO:0008026 | molecular_function | ATP-dependent helicase activity | 0.002967396 | 2 | 113 |
Module147 | 22 | 5 | GO:0070035 | molecular_function | purine NTP-dependent helicase activity | 0.002967396 | 2 | 113 |
Module147 | 22 | 6 | GO:0009094 | biological_process | L-phenylalanine biosynthetic process | 0.003335307 | 1 | 9 |
Module147 | 22 | 7 | GO:1902223 | biological_process | erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process | 0.003335307 | 1 | 9 |
Module147 | 22 | 8 | GO:0004664 | molecular_function | prephenate dehydratase activity | 0.005110411 | 1 | 7 |
Module147 | 22 | 9 | GO:0009095 | biological_process | aromatic amino acid family biosynthetic process, prephenate pathway | 0.005553896 | 1 | 15 |
Module147 | 22 | 10 | GO:0004386 | molecular_function | helicase activity | 0.006732794 | 2 | 172 |
Module147 | 22 | 11 | GO:1902221 | biological_process | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | 0.00703076 | 1 | 19 |
Module147 | 22 | 12 | GO:0006558 | biological_process | L-phenylalanine metabolic process | 0.00703076 | 1 | 19 |
Module147 | 22 | 13 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.007597064 | 3 | 1293 |
Module147 | 22 | 14 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.007597064 | 3 | 1293 |
Module147 | 22 | 15 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.007597064 | 3 | 1293 |
Module147 | 22 | 16 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.007782542 | 3 | 1304 |
Module147 | 22 | 17 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.008285075 | 3 | 1333 |
Module147 | 22 | 18 | GO:0016779 | molecular_function | nucleotidyltransferase activity | 0.008326799 | 2 | 192 |
Module147 | 22 | 19 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.008969392 | 4 | 2909 |
Module147 | 22 | 20 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module147 | 22 | 21 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module147 | 22 | 22 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.009658061 | 3 | 1407 |
Module147 | 22 | 23 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.009697006 | 3 | 1409 |
Module147 | 22 | 24 | GO:0010468 | biological_process | regulation of gene expression | 0.009794798 | 3 | 1414 |
Module147 | 22 | 25 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.009794798 | 3 | 1414 |
Module147 | 22 | 26 | GO:0006351 | biological_process | transcription, DNA-templated | 0.009794798 | 3 | 1414 |
Module147 | 22 | 27 | GO:0032774 | biological_process | RNA biosynthetic process | 0.009893202 | 3 | 1419 |
Module147 | 22 | 28 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.00995254 | 3 | 1422 |
Module147 | 22 | 29 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.010067158 | 4 | 2999 |
Module147 | 22 | 30 | GO:0005634 | cellular_component | nucleus | 0.012092553 | 3 | 2423 |
Module147 | 22 | 31 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.012170854 | 3 | 1527 |
Module147 | 22 | 32 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.012283456 | 3 | 1532 |
Module147 | 22 | 33 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.012786563 | 3 | 1554 |
Module147 | 22 | 34 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.013854847 | 3 | 1599 |
Module147 | 22 | 35 | GO:0019222 | biological_process | regulation of metabolic process | 0.01814826 | 3 | 1761 |
Module147 | 22 | 36 | GO:0044249 | biological_process | cellular biosynthetic process | 0.018905295 | 4 | 3546 |
Module147 | 22 | 37 | GO:0042623 | molecular_function | ATPase activity, coupled | 0.019371757 | 2 | 299 |
Module147 | 22 | 38 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.019408642 | 3 | 1804 |
Module147 | 22 | 39 | GO:0009073 | biological_process | aromatic amino acid family biosynthetic process | 0.019878617 | 1 | 54 |
Module147 | 22 | 40 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.02012703 | 4 | 3606 |
Module147 | 22 | 41 | GO:0016070 | biological_process | RNA metabolic process | 0.020939466 | 3 | 1854 |
Module147 | 22 | 42 | GO:0009058 | biological_process | biosynthetic process | 0.023516678 | 4 | 3760 |
Module147 | 22 | 43 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.026599246 | 4 | 3887 |
Module147 | 22 | 44 | GO:0042393 | molecular_function | histone binding | 0.026742163 | 1 | 37 |
Module147 | 22 | 45 | GO:0009072 | biological_process | aromatic amino acid family metabolic process | 0.029336369 | 1 | 80 |
Module147 | 22 | 46 | GO:0016887 | molecular_function | ATPase activity | 0.030743127 | 2 | 383 |
Module147 | 22 | 47 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.032903279 | 3 | 2185 |
Module147 | 22 | 48 | GO:0044237 | biological_process | cellular metabolic process | 0.039243779 | 5 | 7053 |
Module147 | 22 | 49 | GO:0003677 | molecular_function | DNA binding | 0.040758281 | 4 | 1891 |
Module147 | 22 | 50 | GO:0050794 | biological_process | regulation of cellular process | 0.041541049 | 3 | 2381 |
Module147 | 22 | 51 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.043003519 | 2 | 460 |
Module147 | 22 | 52 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.047722657 | 3 | 2507 |
Module147 | 22 | 53 | GO:0010467 | biological_process | gene expression | 0.047978218 | 3 | 2512 |
Module147 | 22 | 54 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.048697968 | 3 | 2526 |
Module147 | 22 | 55 | GO:0044238 | biological_process | primary metabolic process | 0.048729422 | 5 | 7365 |
Module147 | 22 | 56 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.048801293 | 3 | 2528 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G002309 | GRMZM2G359105 | 0.0421 |
GRMZM2G002309 | GRMZM2G412075 | 0.0372 |
GRMZM2G002309 | GRMZM2G449489 | 0.0514 |
GRMZM2G002309 | GRMZM5G890815 | 0.043 |
bzip46 | bzip22 | 0.0536 |
bzip46 | GRMZM2G368767 | 0.038 |
bzip46 | GRMZM2G449489 | 0.0408 |
bzip22 | GRMZM2G449489 | 0.036 |
GRMZM2G047104 | GRMZM2G124708 | 0.0383 |
GRMZM2G028366 | GRMZM2G370991 | 0.0373 |
GRMZM2G028366 | GRMZM2G449489 | 0.0353 |
GRMZM2G028366 | GRMZM2G476175 | 0.0372 |
GRMZM2G121546 | GRMZM2G449489 | 0.0369 |
GRMZM2G124708 | GRMZM2G418982 | 0.0355 |
GRMZM2G124708 | GRMZM5G887243 | 0.0447 |
GRMZM2G319104 | GRMZM2G104795 | 0.0359 |
GRMZM2G104795 | GRMZM2G359105 | 0.0379 |
GRMZM2G104795 | GRMZM2G370991 | 0.035 |
GRMZM2G104795 | GRMZM2G412075 | 0.043 |
GRMZM2G104795 | GRMZM2G418982 | 0.0566 |
GRMZM2G104795 | GRMZM2G449489 | 0.0447 |
GRMZM2G104795 | GRMZM6G272542 | 0.0385 |
GRMZM2G359105 | GRMZM2G449489 | 0.0386 |
GRMZM2G368767 | GRMZM2G000404 | 0.0382 |
GRMZM2G368767 | fha8 | 0.0374 |
GRMZM2G368767 | GRMZM2G449489 | 0.0371 |
GRMZM2G368767 | GRMZM6G272542 | 0.035 |
GRMZM2G370991 | vim104 | 0.039 |
GRMZM2G370991 | fha8 | 0.0465 |
GRMZM2G370991 | GRMZM2G449489 | 0.0361 |
GRMZM2G370991 | GRMZM6G272542 | 0.0401 |
vim104 | GRMZM2G449489 | 0.0384 |
vim104 | GRMZM6G272542 | 0.0381 |
GRMZM2G412075 | GRMZM5G890815 | 0.0374 |
GRMZM2G418982 | GRMZM2G449489 | 0.0353 |
GRMZM2G449489 | GRMZM2G476175 | 0.0397 |
GRMZM2G449489 | GRMZM6G272542 | 0.0359 |
GRMZM2G476175 | GRMZM5G887243 | 0.0414 |