This page contains information for Module148, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G031420 | Module148 | AT5G20165 | AT5G20165 | ||||
GRMZM2G019500 | Module148 | AT2G20760 | AT2G20760 | Clathrin light chain protein | |||
GRMZM2G024119 | Module148 | AT5G10320 | AT5G10320 | ||||
GRMZM2G033029 | Module148 | AT5G17070 | AT5G17070 | ||||
GRMZM2G049091 | Module148 | AT1G75510 | AT1G75510 | Transcription initiation factor IIF, beta subunit | |||
GRMZM2G056419 | Module148 | AT2G31300 | ARPC1B | actin-related protein C1B | actin-related protein C1B | ||
GRMZM2G058511 | Module148 | AT5G50970 | AT5G50970 | transducin family protein / WD-40 repeat family protein | |||
GRMZM2G061922 | Module148 | AT1G80500 | AT1G80500 | SNARE-like superfamily protein | |||
GRMZM2G068328 | Module148 | AT4G20350 | AT4G20350 | oxidoreductases | |||
GRMZM2G103287 | Module148 | AT5G57330 | AT5G57330 | Galactose mutarotase-like superfamily protein | |||
GRMZM2G093945 | Module148 | AT5G57330 | AT5G57330 | Galactose mutarotase-like superfamily protein | |||
GRMZM2G111214 | Module148 | AT3G49420 | AT3G49420 | Got1/Sft2-like vescicle transport protein family | |||
GRMZM2G119544 | Module148 | AT5G14710 | AT5G14710 | ||||
GRMZM2G005205 | Module148 | ||||||
GRMZM2G122631 | Module148 | AT4G25225 | AT4G25225 | ||||
GRMZM2G142757 | Module148 | AT2G20760 | AT2G20760 | Clathrin light chain protein | |||
GRMZM2G157589 | met4 | Module148 | AT5G25480 | DNMT2 | DNA methyltransferase-2 | DNA methyltransferase-2 | |
GRMZM2G178120 | Module148 | AT3G47910 | AT3G47910 | Ubiquitin carboxyl-terminal hydrolase-related protein | |||
GRMZM2G343688 | Module148 | AT4G10790 | AT4G10790 | UBX domain-containing protein | |||
GRMZM2G159538 | Module148 | AT4G10790 | AT4G10790 | UBX domain-containing protein | |||
GRMZM2G473250 | Module148 | ||||||
GRMZM5G842970 | Module148 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module148 | 22 | 1 | GO:0030130 | cellular_component | clathrin coat of trans-Golgi network vesicle | 5.02E-06 | 2 | 5 |
Module148 | 22 | 2 | GO:0030125 | cellular_component | clathrin vesicle coat | 7.53E-06 | 2 | 6 |
Module148 | 22 | 3 | GO:0012510 | cellular_component | trans-Golgi network transport vesicle membrane | 7.53E-06 | 2 | 6 |
Module148 | 22 | 4 | GO:0030665 | cellular_component | clathrin-coated vesicle membrane | 1.05E-05 | 2 | 7 |
Module148 | 22 | 5 | GO:0005905 | cellular_component | coated pit | 1.05E-05 | 2 | 7 |
Module148 | 22 | 6 | GO:0030132 | cellular_component | clathrin coat of coated pit | 1.05E-05 | 2 | 7 |
Module148 | 22 | 7 | GO:0030140 | cellular_component | trans-Golgi network transport vesicle | 1.81E-05 | 2 | 9 |
Module148 | 22 | 8 | GO:0030136 | cellular_component | clathrin-coated vesicle | 3.91E-05 | 2 | 13 |
Module148 | 22 | 9 | GO:0016192 | biological_process | vesicle-mediated transport | 5.59E-05 | 4 | 283 |
Module148 | 22 | 10 | GO:0030658 | cellular_component | transport vesicle membrane | 7.65E-05 | 2 | 18 |
Module148 | 22 | 11 | GO:0030660 | cellular_component | Golgi-associated vesicle membrane | 0.000137646 | 2 | 24 |
Module148 | 22 | 12 | GO:0098589 | cellular_component | membrane region | 0.000137646 | 2 | 24 |
Module148 | 22 | 13 | GO:0030133 | cellular_component | transport vesicle | 0.000149558 | 2 | 25 |
Module148 | 22 | 14 | GO:0005798 | cellular_component | Golgi-associated vesicle | 0.000202095 | 2 | 29 |
Module148 | 22 | 15 | GO:0030120 | cellular_component | vesicle coat | 0.000312764 | 2 | 36 |
Module148 | 22 | 16 | GO:0030662 | cellular_component | coated vesicle membrane | 0.000330511 | 2 | 37 |
Module148 | 22 | 17 | GO:0098797 | cellular_component | plasma membrane protein complex | 0.000330511 | 2 | 37 |
Module148 | 22 | 18 | GO:0030659 | cellular_component | cytoplasmic vesicle membrane | 0.000367451 | 2 | 39 |
Module148 | 22 | 19 | GO:0044433 | cellular_component | cytoplasmic vesicle part | 0.000367451 | 2 | 39 |
Module148 | 22 | 20 | GO:0030118 | cellular_component | clathrin coat | 0.000386644 | 2 | 40 |
Module148 | 22 | 21 | GO:0012506 | cellular_component | vesicle membrane | 0.000386644 | 2 | 40 |
Module148 | 22 | 22 | GO:0030135 | cellular_component | coated vesicle | 0.00048981 | 2 | 45 |
Module148 | 22 | 23 | GO:0000139 | cellular_component | Golgi membrane | 0.000929568 | 2 | 62 |
Module148 | 22 | 24 | GO:0005674 | cellular_component | transcription factor TFIIF complex | 0.001515654 | 1 | 2 |
Module148 | 22 | 25 | GO:0031410 | cellular_component | cytoplasmic vesicle | 0.001739659 | 2 | 85 |
Module148 | 22 | 26 | GO:0016023 | cellular_component | cytoplasmic, membrane-bounded vesicle | 0.001739659 | 2 | 85 |
Module148 | 22 | 27 | GO:0048475 | cellular_component | coated membrane | 0.001821603 | 2 | 87 |
Module148 | 22 | 28 | GO:0030117 | cellular_component | membrane coat | 0.001821603 | 2 | 87 |
Module148 | 22 | 29 | GO:0031988 | cellular_component | membrane-bounded vesicle | 0.001863258 | 2 | 88 |
Module148 | 22 | 30 | GO:0031982 | cellular_component | vesicle | 0.002122715 | 2 | 94 |
Module148 | 22 | 31 | GO:0046907 | biological_process | intracellular transport | 0.003362078 | 3 | 391 |
Module148 | 22 | 32 | GO:0044459 | cellular_component | plasma membrane part | 0.003956419 | 2 | 129 |
Module148 | 22 | 33 | GO:0051649 | biological_process | establishment of localization in cell | 0.006018838 | 3 | 481 |
Module148 | 22 | 34 | GO:0030246 | molecular_function | carbohydrate binding | 0.007208045 | 2 | 164 |
Module148 | 22 | 35 | GO:0051641 | biological_process | cellular localization | 0.00779829 | 3 | 528 |
Module148 | 22 | 36 | GO:0005886 | cellular_component | plasma membrane | 0.009222486 | 5 | 2055 |
Module148 | 22 | 37 | GO:0009505 | cellular_component | plant-type cell wall | 0.011248835 | 2 | 221 |
Module148 | 22 | 38 | GO:0044431 | cellular_component | Golgi apparatus part | 0.012144128 | 2 | 230 |
Module148 | 22 | 39 | GO:0006367 | biological_process | transcription initiation from RNA polymerase II promoter | 0.01298779 | 1 | 16 |
Module148 | 22 | 40 | GO:0006305 | biological_process | DNA alkylation | 0.018621573 | 1 | 23 |
Module148 | 22 | 41 | GO:0006306 | biological_process | DNA methylation | 0.018621573 | 1 | 23 |
Module148 | 22 | 42 | GO:0030832 | biological_process | regulation of actin filament length | 0.019424009 | 1 | 24 |
Module148 | 22 | 43 | GO:0030833 | biological_process | regulation of actin filament polymerization | 0.019424009 | 1 | 24 |
Module148 | 22 | 44 | GO:0008064 | biological_process | regulation of actin polymerization or depolymerization | 0.019424009 | 1 | 24 |
Module148 | 22 | 45 | GO:0032956 | biological_process | regulation of actin cytoskeleton organization | 0.019424009 | 1 | 24 |
Module148 | 22 | 46 | GO:0032970 | biological_process | regulation of actin filament-based process | 0.019424009 | 1 | 24 |
Module148 | 22 | 47 | GO:0016853 | molecular_function | isomerase activity | 0.020002156 | 2 | 280 |
Module148 | 22 | 48 | GO:0071944 | cellular_component | cell periphery | 0.020048122 | 5 | 2455 |
Module148 | 22 | 49 | GO:0030041 | biological_process | actin filament polymerization | 0.020225847 | 1 | 25 |
Module148 | 22 | 50 | GO:0043254 | biological_process | regulation of protein complex assembly | 0.02102709 | 1 | 26 |
Module148 | 22 | 51 | GO:0006304 | biological_process | DNA modification | 0.02102709 | 1 | 26 |
Module148 | 22 | 52 | GO:0032271 | biological_process | regulation of protein polymerization | 0.02102709 | 1 | 26 |
Module148 | 22 | 53 | GO:0044728 | biological_process | DNA methylation or demethylation | 0.02102709 | 1 | 26 |
Module148 | 22 | 54 | GO:0006888 | biological_process | ER to Golgi vesicle-mediated transport | 0.022627789 | 1 | 28 |
Module148 | 22 | 55 | GO:0006886 | biological_process | intracellular protein transport | 0.023644039 | 2 | 299 |
Module148 | 22 | 56 | GO:0051493 | biological_process | regulation of cytoskeleton organization | 0.025024376 | 1 | 31 |
Module148 | 22 | 57 | GO:0016591 | cellular_component | DNA-directed RNA polymerase II, holoenzyme | 0.025494242 | 1 | 34 |
Module148 | 22 | 58 | GO:0034613 | biological_process | cellular protein localization | 0.026835852 | 2 | 320 |
Module148 | 22 | 59 | GO:0044798 | cellular_component | nuclear transcription factor complex | 0.027716181 | 1 | 37 |
Module148 | 22 | 60 | GO:0090575 | cellular_component | RNA polymerase II transcription factor complex | 0.027716181 | 1 | 37 |
Module148 | 22 | 61 | GO:0070727 | biological_process | cellular macromolecule localization | 0.029705855 | 2 | 338 |
Module148 | 22 | 62 | GO:0044087 | biological_process | regulation of cellular component biogenesis | 0.02980153 | 1 | 37 |
Module148 | 22 | 63 | GO:0008154 | biological_process | actin polymerization or depolymerization | 0.03059565 | 1 | 38 |
Module148 | 22 | 64 | GO:0055029 | cellular_component | nuclear DNA-directed RNA polymerase complex | 0.031409563 | 1 | 42 |
Module148 | 22 | 65 | GO:0000428 | cellular_component | DNA-directed RNA polymerase complex | 0.031409563 | 1 | 42 |
Module148 | 22 | 66 | GO:0030880 | cellular_component | RNA polymerase complex | 0.031409563 | 1 | 42 |
Module148 | 22 | 67 | GO:0032535 | biological_process | regulation of cellular component size | 0.032974467 | 1 | 41 |
Module148 | 22 | 68 | GO:0090066 | biological_process | regulation of anatomical structure size | 0.032974467 | 1 | 41 |
Module148 | 22 | 69 | GO:0009737 | biological_process | response to abscisic acid | 0.033205816 | 2 | 359 |
Module148 | 22 | 70 | GO:0098796 | cellular_component | membrane protein complex | 0.036748425 | 2 | 414 |
Module148 | 22 | 71 | GO:0005667 | cellular_component | transcription factor complex | 0.037293441 | 1 | 50 |
Module148 | 22 | 72 | GO:0006366 | biological_process | transcription from RNA polymerase II promoter | 0.040865582 | 1 | 51 |
Module148 | 22 | 73 | GO:0007015 | biological_process | actin filament organization | 0.041651465 | 1 | 52 |
Module148 | 22 | 74 | GO:0097305 | biological_process | response to alcohol | 0.041978071 | 2 | 408 |
Module148 | 22 | 75 | GO:0006352 | biological_process | DNA-templated transcription, initiation | 0.042436763 | 1 | 53 |
Module148 | 22 | 76 | GO:0015031 | biological_process | protein transport | 0.046373513 | 2 | 431 |
Module148 | 22 | 77 | GO:0045184 | biological_process | establishment of protein localization | 0.0471553 | 2 | 435 |
Module148 | 22 | 78 | GO:0048193 | biological_process | Golgi vesicle transport | 0.048698114 | 1 | 61 |
Module148 | 22 | 79 | GO:0033993 | biological_process | response to lipid | 0.049331174 | 2 | 446 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G031420 | GRMZM2G019500 | 0.035 |
GRMZM2G031420 | GRMZM2G024119 | 0.0402 |
GRMZM2G031420 | GRMZM2G033029 | 0.0443 |
GRMZM2G031420 | GRMZM2G049091 | 0.04 |
GRMZM2G031420 | GRMZM2G056419 | 0.0493 |
GRMZM2G031420 | GRMZM2G061922 | 0.0466 |
GRMZM2G031420 | GRMZM2G068328 | 0.0628 |
GRMZM2G031420 | GRMZM2G103287 | 0.0399 |
GRMZM2G031420 | GRMZM2G119544 | 0.0443 |
GRMZM2G031420 | GRMZM2G122631 | 0.0377 |
GRMZM2G031420 | GRMZM2G178120 | 0.0434 |
GRMZM2G031420 | GRMZM2G473250 | 0.0378 |
GRMZM2G019500 | GRMZM2G142757 | 0.0352 |
GRMZM2G058511 | GRMZM2G068328 | 0.0371 |
GRMZM2G103287 | GRMZM2G093945 | 0.0395 |
GRMZM2G111214 | GRMZM2G119544 | 0.0416 |
GRMZM2G119544 | GRMZM2G005205 | 0.0428 |
GRMZM2G119544 | GRMZM2G343688 | 0.0368 |
met4 | GRMZM2G178120 | 0.047 |
GRMZM2G343688 | GRMZM2G159538 | 0.0406 |
GRMZM2G473250 | GRMZM5G842970 | 0.0374 |