This page contains information for Module165, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G007909 | Module165 | AT4G35335 | AT4G35335 | Nucleotide-sugar transporter family protein | |||
GRMZM2G026956 | Module165 | AT1G65680 | EXPB2 | expansin B2 | expansin B2 | ||
GRMZM2G021998 | Module165 | ||||||
GRMZM2G041065 | Module165 | AT1G15690 | AVP1 | Inorganic H pyrophosphatase family protein | |||
GRMZM2G076239 | Module165 | AT3G14420 | GOX1 | glycolate oxidase 1 | Aldolase-type TIM barrel family protein | ||
GRMZM2G091819 | de18 | Module165 | AT1G21430 | YUC11 | Flavin-binding monooxygenase family protein | ||
GRMZM2G020302 | Module165 | ||||||
GRMZM2G097030 | cngt1 | Module165 | AT3G55700 | AT3G55700 | UDP-Glycosyltransferase superfamily protein | ||
GRMZM2G118205 | fie1 | Module165 | AT3G20740 | FIE | FERTILIZATION-INDEPENDENT ENDOSPERM | Transducin/WD40 repeat-like superfamily protein | |
GRMZM2G121570 | myb73 | Module165 | AT5G58850 | MYB119 | myb domain protein 119 | myb domain protein 119 | MYB |
GRMZM2G127160 | tar1 | Module165 | AT4G24670 | TAR2 | tryptophan aminotransferase related 2 | tryptophan aminotransferase related 2 | |
GRMZM2G144610 | endo1 | Module165 | AT5G55730 | FLA1 | FASCICLIN-like arabinogalactan 1 | FASCICLIN-like arabinogalactan 1 | |
GRMZM2G147685 | bhlh167 | Module165 | AT1G49770 | RGE1 | RETARDED GROWTH OF EMBRYO 1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
GRMZM2G021587 | Module165 | AT2G02070 | IDD5 | indeterminate(ID)-domain 5 | indeterminate(ID)-domain 5 | C2H2 | |
GRMZM2G154216 | Module165 | AT5G17540 | AT5G17540 | HXXXD-type acyl-transferase family protein | |||
GRMZM2G175423 | sodh1 | Module165 | AT5G51970 | AT5G51970 | GroES-like zinc-binding alcohol dehydrogenase family protein | ||
GRMZM2G342895 | Module165 | AT3G53320 | AT3G53320 | ||||
GRMZM2G386155 | Module165 | AT3G25420 | scpl21 | serine carboxypeptidase-like 21 | serine carboxypeptidase-like 21 | ||
GRMZM2G415470 | Module165 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module165 | 19 | 1 | GO:2000014 | biological_process | regulation of endosperm development | 0.001631926 | 1 | 2 |
Module165 | 19 | 2 | GO:0004838 | molecular_function | L-tyrosine:2-oxoglutarate aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 3 | GO:0080097 | molecular_function | L-tryptophan:pyruvate aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 4 | GO:0080098 | molecular_function | L-tyrosine:pyruvate aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 5 | GO:0080099 | molecular_function | L-methionine:2-oxoglutarate aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 6 | GO:0050048 | molecular_function | L-leucine:2-oxoglutarate aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 7 | GO:0047312 | molecular_function | L-phenylalanine:pyruvate aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 8 | GO:0070529 | molecular_function | L-tryptophan aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 9 | GO:0070547 | molecular_function | L-tyrosine aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 10 | GO:0050362 | molecular_function | L-tryptophan:2-oxoglutarate aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 11 | GO:0080100 | molecular_function | L-glutamine:2-oxoglutarate aminotransferase activity | 0.001828042 | 1 | 2 |
Module165 | 19 | 12 | GO:0043076 | cellular_component | megasporocyte nucleus | 0.001988824 | 1 | 3 |
Module165 | 19 | 13 | GO:0043078 | cellular_component | polar nucleus | 0.001988824 | 1 | 3 |
Module165 | 19 | 14 | GO:0047635 | molecular_function | alanine-oxo-acid transaminase activity | 0.002740893 | 1 | 3 |
Module165 | 19 | 15 | GO:0004021 | molecular_function | L-alanine:2-oxoglutarate aminotransferase activity | 0.002740893 | 1 | 3 |
Module165 | 19 | 16 | GO:0070548 | molecular_function | L-glutamine aminotransferase activity | 0.002740893 | 1 | 3 |
Module165 | 19 | 17 | GO:0070546 | molecular_function | L-phenylalanine aminotransferase activity | 0.003652964 | 1 | 4 |
Module165 | 19 | 18 | GO:0010326 | molecular_function | methionine-oxo-acid transaminase activity | 0.003652964 | 1 | 4 |
Module165 | 19 | 19 | GO:0080130 | molecular_function | L-phenylalanine:2-oxoglutarate aminotransferase activity | 0.003652964 | 1 | 4 |
Module165 | 19 | 20 | GO:0009684 | biological_process | indoleacetic acid biosynthetic process | 0.004888517 | 1 | 6 |
Module165 | 19 | 21 | GO:0080050 | biological_process | regulation of seed development | 0.005701155 | 1 | 7 |
Module165 | 19 | 22 | GO:0010078 | biological_process | maintenance of root meristem identity | 0.006513189 | 1 | 8 |
Module165 | 19 | 23 | GO:0009683 | biological_process | indoleacetic acid metabolic process | 0.006513189 | 1 | 8 |
Module165 | 19 | 24 | GO:0010588 | biological_process | cotyledon vascular tissue pattern formation | 0.008945675 | 1 | 11 |
Module165 | 19 | 25 | GO:0009851 | biological_process | auxin biosynthetic process | 0.008945675 | 1 | 11 |
Module165 | 19 | 26 | GO:0009641 | biological_process | shade avoidance | 0.008945675 | 1 | 11 |
Module165 | 19 | 27 | GO:0006349 | biological_process | regulation of gene expression by genetic imprinting | 0.010564323 | 1 | 13 |
Module165 | 19 | 28 | GO:0071514 | biological_process | genetic imprinting | 0.010564323 | 1 | 13 |
Module165 | 19 | 29 | GO:0048826 | biological_process | cotyledon morphogenesis | 0.010564323 | 1 | 13 |
Module165 | 19 | 30 | GO:0005338 | molecular_function | nucleotide-sugar transmembrane transporter activity | 0.010921559 | 1 | 12 |
Module165 | 19 | 31 | GO:0009960 | biological_process | endosperm development | 0.012180568 | 1 | 15 |
Module165 | 19 | 32 | GO:0080022 | biological_process | primary root development | 0.012180568 | 1 | 15 |
Module165 | 19 | 33 | GO:0015780 | biological_process | nucleotide-sugar transport | 0.013794412 | 1 | 17 |
Module165 | 19 | 34 | GO:0009678 | molecular_function | hydrogen-translocating pyrophosphatase activity | 0.015439267 | 1 | 17 |
Module165 | 19 | 35 | GO:0042446 | biological_process | hormone biosynthetic process | 0.016210684 | 1 | 20 |
Module165 | 19 | 36 | GO:0005402 | molecular_function | cation:sugar symporter activity | 0.016340494 | 1 | 18 |
Module165 | 19 | 37 | GO:0005351 | molecular_function | sugar:proton symporter activity | 0.016340494 | 1 | 18 |
Module165 | 19 | 38 | GO:0009958 | biological_process | positive gravitropism | 0.017014911 | 1 | 21 |
Module165 | 19 | 39 | GO:0048598 | biological_process | embryonic morphogenesis | 0.017014911 | 1 | 21 |
Module165 | 19 | 40 | GO:0016846 | molecular_function | carbon-sulfur lyase activity | 0.019039559 | 1 | 21 |
Module165 | 19 | 41 | GO:0015295 | molecular_function | solute:proton symporter activity | 0.019937709 | 1 | 22 |
Module165 | 19 | 42 | GO:0009790 | biological_process | embryo development | 0.021046429 | 2 | 281 |
Module165 | 19 | 43 | GO:0048316 | biological_process | seed development | 0.02132863 | 2 | 283 |
Module165 | 19 | 44 | GO:0048856 | biological_process | anatomical structure development | 0.021353774 | 4 | 1406 |
Module165 | 19 | 45 | GO:0034754 | biological_process | cellular hormone metabolic process | 0.021827737 | 1 | 27 |
Module165 | 19 | 46 | GO:0004427 | molecular_function | inorganic diphosphatase activity | 0.022627559 | 1 | 25 |
Module165 | 19 | 47 | GO:0042435 | biological_process | indole-containing compound biosynthetic process | 0.023427246 | 1 | 29 |
Module165 | 19 | 48 | GO:0010154 | biological_process | fruit development | 0.024089496 | 2 | 302 |
Module165 | 19 | 49 | GO:0048825 | biological_process | cotyledon development | 0.024226108 | 1 | 30 |
Module165 | 19 | 50 | GO:0009850 | biological_process | auxin metabolic process | 0.02582205 | 1 | 32 |
Module165 | 19 | 51 | GO:0010074 | biological_process | maintenance of meristem identity | 0.02582205 | 1 | 32 |
Module165 | 19 | 52 | GO:0050793 | biological_process | regulation of developmental process | 0.026060422 | 2 | 315 |
Module165 | 19 | 53 | GO:0015294 | molecular_function | solute:cation symporter activity | 0.027095336 | 1 | 30 |
Module165 | 19 | 54 | GO:0015215 | molecular_function | nucleotide transmembrane transporter activity | 0.027986601 | 1 | 31 |
Module165 | 19 | 55 | GO:0010087 | biological_process | phloem or xylem histogenesis | 0.028211515 | 1 | 35 |
Module165 | 19 | 56 | GO:0019827 | biological_process | stem cell population maintenance | 0.029006818 | 1 | 36 |
Module165 | 19 | 57 | GO:0006862 | biological_process | nucleotide transport | 0.029006818 | 1 | 36 |
Module165 | 19 | 58 | GO:0098727 | biological_process | maintenance of cell number | 0.029006818 | 1 | 36 |
Module165 | 19 | 59 | GO:0051119 | molecular_function | sugar transmembrane transporter activity | 0.029766845 | 1 | 33 |
Module165 | 19 | 60 | GO:0015293 | molecular_function | symporter activity | 0.029766845 | 1 | 33 |
Module165 | 19 | 61 | GO:0009888 | biological_process | tissue development | 0.030360073 | 2 | 342 |
Module165 | 19 | 62 | GO:0015605 | molecular_function | organophosphate ester transmembrane transporter activity | 0.031544045 | 1 | 35 |
Module165 | 19 | 63 | GO:0032502 | biological_process | developmental process | 0.031738109 | 4 | 1583 |
Module165 | 19 | 64 | GO:0015932 | molecular_function | nucleobase-containing compound transmembrane transporter activity | 0.03420415 | 1 | 38 |
Module165 | 19 | 65 | GO:1901264 | biological_process | carbohydrate derivative transport | 0.034557396 | 1 | 43 |
Module165 | 19 | 66 | GO:1901476 | molecular_function | carbohydrate transporter activity | 0.035089335 | 1 | 39 |
Module165 | 19 | 67 | GO:0015144 | molecular_function | carbohydrate transmembrane transporter activity | 0.035089335 | 1 | 39 |
Module165 | 19 | 68 | GO:0010181 | molecular_function | FMN binding | 0.035973763 | 1 | 40 |
Module165 | 19 | 69 | GO:0042430 | biological_process | indole-containing compound metabolic process | 0.036927372 | 1 | 46 |
Module165 | 19 | 70 | GO:0010051 | biological_process | xylem and phloem pattern formation | 0.038504417 | 1 | 48 |
Module165 | 19 | 71 | GO:0015931 | biological_process | nucleobase-containing compound transport | 0.039292058 | 1 | 49 |
Module165 | 19 | 72 | GO:0009630 | biological_process | gravitropism | 0.039292058 | 1 | 49 |
Module165 | 19 | 73 | GO:0022804 | molecular_function | active transmembrane transporter activity | 0.040307092 | 2 | 353 |
Module165 | 19 | 74 | GO:0000139 | cellular_component | Golgi membrane | 0.040419238 | 1 | 62 |
Module165 | 19 | 75 | GO:0022603 | biological_process | regulation of anatomical structure morphogenesis | 0.040865582 | 1 | 51 |
Module165 | 19 | 76 | GO:0004185 | molecular_function | serine-type carboxypeptidase activity | 0.042143604 | 1 | 47 |
Module165 | 19 | 77 | GO:1901505 | molecular_function | carbohydrate derivative transporter activity | 0.042143604 | 1 | 47 |
Module165 | 19 | 78 | GO:0016769 | molecular_function | transferase activity, transferring nitrogenous groups | 0.043021995 | 1 | 48 |
Module165 | 19 | 79 | GO:0008483 | molecular_function | transaminase activity | 0.043021995 | 1 | 48 |
Module165 | 19 | 80 | GO:0015748 | biological_process | organophosphate ester transport | 0.044005603 | 1 | 55 |
Module165 | 19 | 81 | GO:0009629 | biological_process | response to gravity | 0.044005603 | 1 | 55 |
Module165 | 19 | 82 | GO:0070008 | molecular_function | serine-type exopeptidase activity | 0.044776523 | 1 | 50 |
Module165 | 19 | 83 | GO:0042445 | biological_process | hormone metabolic process | 0.044789146 | 1 | 56 |
Module165 | 19 | 84 | GO:0016571 | biological_process | histone methylation | 0.045572106 | 1 | 57 |
Module165 | 19 | 85 | GO:1901677 | molecular_function | phosphate transmembrane transporter activity | 0.04565266 | 1 | 51 |
Module165 | 19 | 86 | GO:0009606 | biological_process | tropism | 0.046354482 | 1 | 58 |
Module165 | 19 | 87 | GO:0004180 | molecular_function | carboxypeptidase activity | 0.049149715 | 1 | 55 |
Module165 | 19 | 88 | GO:0048467 | biological_process | gynoecium development | 0.04947816 | 1 | 62 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G007909 | de18 | 0.0407 |
GRMZM2G007909 | cngt1 | 0.0376 |
GRMZM2G007909 | myb73 | 0.0383 |
GRMZM2G007909 | GRMZM2G415470 | 0.0469 |
GRMZM2G026956 | GRMZM2G021998 | 0.0453 |
GRMZM2G026956 | GRMZM2G041065 | 0.0404 |
GRMZM2G026956 | myb73 | 0.0419 |
GRMZM2G021998 | GRMZM2G041065 | 0.0454 |
GRMZM2G021998 | de18 | 0.0384 |
GRMZM2G021998 | cngt1 | 0.0366 |
GRMZM2G021998 | tar1 | 0.0359 |
GRMZM2G021998 | GRMZM2G415470 | 0.0376 |
GRMZM2G041065 | de18 | 0.0557 |
GRMZM2G041065 | tar1 | 0.0361 |
GRMZM2G041065 | bhlh167 | 0.0429 |
GRMZM2G076239 | de18 | 0.0482 |
GRMZM2G076239 | cngt1 | 0.0472 |
de18 | GRMZM2G020302 | 0.0363 |
de18 | cngt1 | 0.0518 |
de18 | fie1 | 0.0402 |
de18 | tar1 | 0.0621 |
de18 | endo1 | 0.0359 |
de18 | bhlh167 | 0.0436 |
de18 | GRMZM2G154216 | 0.0409 |
de18 | sodh1 | 0.0454 |
de18 | GRMZM2G342895 | 0.035 |
de18 | GRMZM2G386155 | 0.0423 |
de18 | GRMZM2G415470 | 0.0475 |
GRMZM2G020302 | cngt1 | 0.0446 |
GRMZM2G020302 | fie1 | 0.0371 |
cngt1 | tar1 | 0.0416 |
cngt1 | GRMZM2G154216 | 0.0371 |
cngt1 | sodh1 | 0.0372 |
cngt1 | GRMZM2G415470 | 0.0368 |
fie1 | tar1 | 0.0353 |
myb73 | GRMZM2G415470 | 0.0425 |
tar1 | sodh1 | 0.0373 |
tar1 | GRMZM2G386155 | 0.0446 |
bhlh167 | GRMZM2G021587 | 0.0351 |