This page contains information for Module174, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC217556.3_FG003 | Module174 | AT2G44710 | AT2G44710 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
GRMZM2G086202 | Module174 | ||||||
GRMZM2G092451 | Module174 | AT5G55310 | TOP1BETA | DNA topoisomerase 1 beta | DNA topoisomerase 1 beta | ||
GRMZM2G100497 | Module174 | AT1G34150 | AT1G34150 | Pseudouridine synthase family protein | |||
GRMZM2G117108 | farl8 | Module174 | AT1G52520 | FRS6 | FAR1-related sequence 6 | FAR1-related sequence 6 | FAR1 |
GRMZM2G127756 | Module174 | AT1G50500 | HIT1 | HEAT-INTOLERANT 1 | Membrane trafficking VPS53 family protein | ||
GRMZM2G144971 | Module174 | AT3G62900 | AT3G62900 | CW-type Zinc Finger | |||
GRMZM2G121776 | Module174 | AT1G32490 | ESP3 | ENHANCED SILENCING PHENOTYPE 3 | RNA helicase family protein | ||
GRMZM2G157389 | Module174 | ||||||
GRMZM2G162374 | Module174 | ||||||
GRMZM2G163045 | Module174 | AT3G46730 | AT3G46730 | NB-ARC domain-containing disease resistance protein | |||
GRMZM2G172917 | Module174 | AT5G66030 | ATGRIP | Golgi-localized GRIP domain-containing protein | |||
GRMZM2G333623 | Module174 | AT5G43130 | TAF4 | TBP-associated factor 4 | TBP-associated factor 4 | ||
GRMZM2G470740 | Module174 | AT5G48090 | ELP1 | EDM2-like protein1 | EDM2-like protein1 | ||
GRMZM5G832378 | Module174 | AT4G18230 | AT4G18230 | ||||
GRMZM2G119791 | Module174 | AT1G08660 | MGP2 | MALE GAMETOPHYTE DEFECTIVE 2 | MALE GAMETOPHYTE DEFECTIVE 2 | ||
GRMZM6G101378 | Module174 | AT4G35760 | LTO1 | Lumen Thiol Oxidoreductase 1 | NAD(P)H dehydrogenase (quinone)s | ||
GRMZM6G441248 | Module174 | AT3G02420 | AT3G02420 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module174 | 18 | 1 | GO:0034067 | biological_process | protein localization to Golgi apparatus | 0.001186988 | 1 | 2 |
Module174 | 18 | 2 | GO:0048439 | biological_process | flower morphogenesis | 0.001780019 | 1 | 3 |
Module174 | 18 | 3 | GO:0006891 | biological_process | intra-Golgi vesicle-mediated transport | 0.002372742 | 1 | 4 |
Module174 | 18 | 4 | GO:0008373 | molecular_function | sialyltransferase activity | 0.003044694 | 1 | 5 |
Module174 | 18 | 5 | GO:0003917 | molecular_function | DNA topoisomerase type I activity | 0.004260234 | 1 | 7 |
Module174 | 18 | 6 | GO:0003918 | molecular_function | DNA topoisomerase type II (ATP-hydrolyzing) activity | 0.004260234 | 1 | 7 |
Module174 | 18 | 7 | GO:0061505 | molecular_function | DNA topoisomerase II activity | 0.004260234 | 1 | 7 |
Module174 | 18 | 8 | GO:0005669 | cellular_component | transcription factor TFIID complex | 0.005107338 | 1 | 9 |
Module174 | 18 | 9 | GO:0031228 | cellular_component | intrinsic component of Golgi membrane | 0.005673476 | 1 | 10 |
Module174 | 18 | 10 | GO:0030173 | cellular_component | integral component of Golgi membrane | 0.005673476 | 1 | 10 |
Module174 | 18 | 11 | GO:0006338 | biological_process | chromatin remodeling | 0.005922619 | 1 | 10 |
Module174 | 18 | 12 | GO:0009793 | biological_process | embryo development ending in seed dormancy | 0.00624438 | 2 | 208 |
Module174 | 18 | 13 | GO:0048645 | biological_process | organ formation | 0.006513189 | 1 | 11 |
Module174 | 18 | 14 | GO:0010207 | biological_process | photosystem II assembly | 0.007693408 | 1 | 13 |
Module174 | 18 | 15 | GO:0006265 | biological_process | DNA topological change | 0.007693408 | 1 | 13 |
Module174 | 18 | 16 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.007786777 | 3 | 750 |
Module174 | 18 | 17 | GO:0003916 | molecular_function | DNA topoisomerase activity | 0.007898854 | 1 | 13 |
Module174 | 18 | 18 | GO:0044702 | biological_process | single organism reproductive process | 0.008500786 | 3 | 774 |
Module174 | 18 | 19 | GO:0048589 | biological_process | developmental growth | 0.008778607 | 2 | 248 |
Module174 | 18 | 20 | GO:0009790 | biological_process | embryo development | 0.011165192 | 2 | 281 |
Module174 | 18 | 21 | GO:0048316 | biological_process | seed development | 0.011318222 | 2 | 283 |
Module174 | 18 | 22 | GO:0016853 | molecular_function | isomerase activity | 0.011934745 | 2 | 280 |
Module174 | 18 | 23 | GO:0010154 | biological_process | fruit development | 0.012818982 | 2 | 302 |
Module174 | 18 | 24 | GO:0042623 | molecular_function | ATPase activity, coupled | 0.013528564 | 2 | 299 |
Module174 | 18 | 25 | GO:0022414 | biological_process | reproductive process | 0.013574453 | 3 | 917 |
Module174 | 18 | 26 | GO:0000003 | biological_process | reproduction | 0.013778046 | 3 | 922 |
Module174 | 18 | 27 | GO:0010075 | biological_process | regulation of meristem growth | 0.014748998 | 1 | 25 |
Module174 | 18 | 28 | GO:0040007 | biological_process | growth | 0.015270802 | 2 | 331 |
Module174 | 18 | 29 | GO:0009982 | molecular_function | pseudouridine synthase activity | 0.01574151 | 1 | 26 |
Module174 | 18 | 30 | GO:0001522 | biological_process | pseudouridine synthesis | 0.016506021 | 1 | 28 |
Module174 | 18 | 31 | GO:0016591 | cellular_component | DNA-directed RNA polymerase II, holoenzyme | 0.019180468 | 1 | 34 |
Module174 | 18 | 32 | GO:0035266 | biological_process | meristem growth | 0.020011844 | 1 | 34 |
Module174 | 18 | 33 | GO:0044798 | cellular_component | nuclear transcription factor complex | 0.020858038 | 1 | 37 |
Module174 | 18 | 34 | GO:0090575 | cellular_component | RNA polymerase II transcription factor complex | 0.020858038 | 1 | 37 |
Module174 | 18 | 35 | GO:0019827 | biological_process | stem cell population maintenance | 0.02117802 | 1 | 36 |
Module174 | 18 | 36 | GO:0098727 | biological_process | maintenance of cell number | 0.02117802 | 1 | 36 |
Module174 | 18 | 37 | GO:0016887 | molecular_function | ATPase activity | 0.021614586 | 2 | 383 |
Module174 | 18 | 38 | GO:0008094 | molecular_function | DNA-dependent ATPase activity | 0.022333974 | 1 | 37 |
Module174 | 18 | 39 | GO:0035194 | biological_process | posttranscriptional gene silencing by RNA | 0.022925006 | 1 | 39 |
Module174 | 18 | 40 | GO:0055029 | cellular_component | nuclear DNA-directed RNA polymerase complex | 0.023648675 | 1 | 42 |
Module174 | 18 | 41 | GO:0000428 | cellular_component | DNA-directed RNA polymerase complex | 0.023648675 | 1 | 42 |
Module174 | 18 | 42 | GO:0030880 | cellular_component | RNA polymerase complex | 0.023648675 | 1 | 42 |
Module174 | 18 | 43 | GO:0016441 | biological_process | posttranscriptional gene silencing | 0.025830587 | 1 | 44 |
Module174 | 18 | 44 | GO:0009933 | biological_process | meristem structural organization | 0.027570304 | 1 | 47 |
Module174 | 18 | 45 | GO:0048638 | biological_process | regulation of developmental growth | 0.027570304 | 1 | 47 |
Module174 | 18 | 46 | GO:0005667 | cellular_component | transcription factor complex | 0.028099906 | 1 | 50 |
Module174 | 18 | 47 | GO:0031047 | biological_process | gene silencing by RNA | 0.028149605 | 1 | 48 |
Module174 | 18 | 48 | GO:0016655 | molecular_function | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 0.028292609 | 1 | 47 |
Module174 | 18 | 49 | GO:0009846 | biological_process | pollen germination | 0.028728605 | 1 | 49 |
Module174 | 18 | 50 | GO:0048532 | biological_process | anatomical structure arrangement | 0.028728605 | 1 | 49 |
Module174 | 18 | 51 | GO:0006352 | biological_process | DNA-templated transcription, initiation | 0.031041585 | 1 | 53 |
Module174 | 18 | 52 | GO:0031301 | cellular_component | integral component of organelle membrane | 0.032534213 | 1 | 58 |
Module174 | 18 | 53 | GO:0043933 | biological_process | macromolecular complex subunit organization | 0.033408213 | 2 | 502 |
Module174 | 18 | 54 | GO:0000139 | cellular_component | Golgi membrane | 0.034745036 | 1 | 62 |
Module174 | 18 | 55 | GO:0016043 | biological_process | cellular component organization | 0.034840667 | 3 | 1303 |
Module174 | 18 | 56 | GO:0048193 | biological_process | Golgi vesicle transport | 0.035653091 | 1 | 61 |
Module174 | 18 | 57 | GO:0008033 | biological_process | tRNA processing | 0.035653091 | 1 | 61 |
Module174 | 18 | 58 | GO:0009653 | biological_process | anatomical structure morphogenesis | 0.037576316 | 2 | 535 |
Module174 | 18 | 59 | GO:0048509 | biological_process | regulation of meristem development | 0.037951634 | 1 | 65 |
Module174 | 18 | 60 | GO:0010073 | biological_process | meristem maintenance | 0.03852552 | 1 | 66 |
Module174 | 18 | 61 | GO:0016458 | biological_process | gene silencing | 0.039672393 | 1 | 68 |
Module174 | 18 | 62 | GO:0061695 | cellular_component | transferase complex, transferring phosphorus-containing groups | 0.040253681 | 1 | 72 |
Module174 | 18 | 63 | GO:0031300 | cellular_component | intrinsic component of organelle membrane | 0.040803102 | 1 | 73 |
Module174 | 18 | 64 | GO:0040008 | biological_process | regulation of growth | 0.04139046 | 1 | 71 |
Module174 | 18 | 65 | GO:0044707 | biological_process | single-multicellular organism process | 0.041465909 | 3 | 1393 |
Module174 | 18 | 66 | GO:0016866 | molecular_function | intramolecular transferase activity | 0.042460202 | 1 | 71 |
Module174 | 18 | 67 | GO:0048856 | biological_process | anatomical structure development | 0.042475738 | 3 | 1406 |
Module174 | 18 | 68 | GO:0009965 | biological_process | leaf morphogenesis | 0.042534342 | 1 | 73 |
Module174 | 18 | 69 | GO:0040029 | biological_process | regulation of gene expression, epigenetic | 0.043677031 | 1 | 75 |
Module174 | 18 | 70 | GO:0071840 | biological_process | cellular component organization or biogenesis | 0.044776479 | 3 | 1435 |
Module174 | 18 | 71 | GO:0006486 | biological_process | protein glycosylation | 0.046528532 | 1 | 80 |
Module174 | 18 | 72 | GO:0009100 | biological_process | glycoprotein metabolic process | 0.046528532 | 1 | 80 |
Module174 | 18 | 73 | GO:0009101 | biological_process | glycoprotein biosynthetic process | 0.046528532 | 1 | 80 |
Module174 | 18 | 74 | GO:0043413 | biological_process | macromolecule glycosylation | 0.046528532 | 1 | 80 |
Module174 | 18 | 75 | GO:0009860 | biological_process | pollen tube growth | 0.047097939 | 1 | 81 |
Module174 | 18 | 76 | GO:0032501 | biological_process | multicellular organismal process | 0.049406769 | 3 | 1491 |
Module174 | 18 | 77 | GO:0061458 | biological_process | reproductive system development | 0.049496441 | 2 | 622 |
Module174 | 18 | 78 | GO:0048608 | biological_process | reproductive structure development | 0.049496441 | 2 | 622 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC217556.3_FG003 | GRMZM2G086202 | 0.0591 |
AC217556.3_FG003 | GRMZM2G163045 | 0.0352 |
GRMZM2G086202 | GRMZM2G100497 | 0.0431 |
GRMZM2G086202 | GRMZM2G127756 | 0.035 |
GRMZM2G086202 | GRMZM2G144971 | 0.0409 |
GRMZM2G086202 | GRMZM2G157389 | 0.0399 |
GRMZM2G086202 | GRMZM2G162374 | 0.0413 |
GRMZM2G086202 | GRMZM2G172917 | 0.0413 |
GRMZM2G086202 | GRMZM2G333623 | 0.0372 |
GRMZM2G086202 | GRMZM6G441248 | 0.0351 |
GRMZM2G092451 | GRMZM2G470740 | 0.0354 |
farl8 | GRMZM2G144971 | 0.0389 |
GRMZM2G144971 | GRMZM2G121776 | 0.0434 |
GRMZM2G144971 | GRMZM2G470740 | 0.0403 |
GRMZM2G121776 | GRMZM2G172917 | 0.04 |
GRMZM2G121776 | GRMZM2G470740 | 0.036 |
GRMZM2G157389 | GRMZM5G832378 | 0.0377 |
GRMZM2G157389 | GRMZM6G101378 | 0.0511 |
GRMZM2G157389 | GRMZM6G441248 | 0.0441 |
GRMZM5G832378 | GRMZM2G119791 | 0.0378 |
GRMZM6G101378 | GRMZM6G441248 | 0.0368 |