This page contains information for Module180, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G038436 | Module180 | AT1G76640 | AT1G76640 | Calcium-binding EF-hand family protein | |||
GRMZM2G046755 | Module180 | AT1G75660 | XRN3 | 5'-3' exoribonuclease 3 | 5'-3' exoribonuclease 3 | ||
GRMZM2G049785 | Module180 | AT3G06290 | SAC3B | yeast Sac3 homolog B | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | ||
GRMZM2G053742 | Module180 | AT4G11450 | AT4G11450 | Protein of unknown function (DUF3527) | |||
GRMZM2G081017 | Module180 | AT2G04780 | FLA7 | FASCICLIN-like arabinoogalactan 7 | FASCICLIN-like arabinoogalactan 7 | ||
GRMZM2G082335 | Module180 | ||||||
GRMZM2G128491 | Module180 | AT1G35780 | AT1G35780 | ||||
GRMZM2G107495 | Module180 | AT1G35780 | AT1G35780 | ||||
GRMZM2G131389 | Module180 | AT3G06290 | SAC3B | yeast Sac3 homolog B | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | ||
GRMZM2G169391 | Module180 | ||||||
GRMZM2G306727 | Module180 | AT3G07040 | RPM1 | RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 | NB-ARC domain-containing disease resistance protein | ||
GRMZM2G316840 | nactf76 | Module180 | AT5G64530 | XND1 | xylem NAC domain 1 | xylem NAC domain 1 | NAC |
GRMZM2G023387 | Module180 | AT1G11530 | CXXS1 | C-terminal cysteine residue is changed to a serine 1 | C-terminal cysteine residue is changed to a serine 1 | ||
GRMZM2G320754 | abi5 | Module180 | AT4G33280 | AT4G33280 | AP2/B3-like transcriptional factor family protein | ABI3VP1 | |
GRMZM2G159134 | bzip102 | Module180 | AT3G56850 | AREB3 | ABA-responsive element binding protein 3 | ABA-responsive element binding protein 3 | bZIP |
GRMZM2G386582 | Module180 | AT4G28300 | AT4G28300 | Protein of unknown function (DUF1421) | |||
GRMZM2G386987 | Module180 | ||||||
GRMZM2G429231 | Module180 | AT3G06290 | SAC3B | yeast Sac3 homolog B | SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module180 | 18 | 1 | GO:0003756 | molecular_function | protein disulfide isomerase activity | 0.001705964 | 1 | 4 |
Module180 | 18 | 2 | GO:0016864 | molecular_function | intramolecular oxidoreductase activity, transposing S-S bonds | 0.001705964 | 1 | 4 |
Module180 | 18 | 3 | GO:0050794 | biological_process | regulation of cellular process | 0.004176171 | 4 | 2381 |
Module180 | 18 | 4 | GO:0010089 | biological_process | xylem development | 0.005923277 | 1 | 16 |
Module180 | 18 | 5 | GO:0050789 | biological_process | regulation of biological process | 0.0072543 | 4 | 2751 |
Module180 | 18 | 6 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.007597064 | 3 | 1293 |
Module180 | 18 | 7 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.007597064 | 3 | 1293 |
Module180 | 18 | 8 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.007597064 | 3 | 1293 |
Module180 | 18 | 9 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.007782542 | 3 | 1304 |
Module180 | 18 | 10 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.008285075 | 3 | 1333 |
Module180 | 18 | 11 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module180 | 18 | 12 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module180 | 18 | 13 | GO:0065007 | biological_process | biological regulation | 0.009169813 | 4 | 2926 |
Module180 | 18 | 14 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.009658061 | 3 | 1407 |
Module180 | 18 | 15 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.009697006 | 3 | 1409 |
Module180 | 18 | 16 | GO:0010468 | biological_process | regulation of gene expression | 0.009794798 | 3 | 1414 |
Module180 | 18 | 17 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.009794798 | 3 | 1414 |
Module180 | 18 | 18 | GO:0006351 | biological_process | transcription, DNA-templated | 0.009794798 | 3 | 1414 |
Module180 | 18 | 19 | GO:0032774 | biological_process | RNA biosynthetic process | 0.009893202 | 3 | 1419 |
Module180 | 18 | 20 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.00995254 | 3 | 1422 |
Module180 | 18 | 21 | GO:0043067 | biological_process | regulation of programmed cell death | 0.010347287 | 1 | 28 |
Module180 | 18 | 22 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.012170854 | 3 | 1527 |
Module180 | 18 | 23 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.012283456 | 3 | 1532 |
Module180 | 18 | 24 | GO:0010941 | biological_process | regulation of cell death | 0.012553378 | 1 | 34 |
Module180 | 18 | 25 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.012786563 | 3 | 1554 |
Module180 | 18 | 26 | GO:0010087 | biological_process | phloem or xylem histogenesis | 0.012920677 | 1 | 35 |
Module180 | 18 | 27 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.013854847 | 3 | 1599 |
Module180 | 18 | 28 | GO:0018904 | biological_process | ether metabolic process | 0.018051397 | 1 | 49 |
Module180 | 18 | 29 | GO:0006662 | biological_process | glycerol ether metabolic process | 0.018051397 | 1 | 49 |
Module180 | 18 | 30 | GO:0019222 | biological_process | regulation of metabolic process | 0.01814826 | 3 | 1761 |
Module180 | 18 | 31 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.019408642 | 3 | 1804 |
Module180 | 18 | 32 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.019799872 | 3 | 1817 |
Module180 | 18 | 33 | GO:0016860 | molecular_function | intramolecular oxidoreductase activity | 0.01988812 | 1 | 47 |
Module180 | 18 | 34 | GO:0016070 | biological_process | RNA metabolic process | 0.020939466 | 3 | 1854 |
Module180 | 18 | 35 | GO:0004527 | molecular_function | exonuclease activity | 0.022402454 | 1 | 53 |
Module180 | 18 | 36 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.023202162 | 3 | 1924 |
Module180 | 18 | 37 | GO:0012501 | biological_process | programmed cell death | 0.026434103 | 1 | 72 |
Module180 | 18 | 38 | GO:0003676 | molecular_function | nucleic acid binding | 0.027906086 | 4 | 3117 |
Module180 | 18 | 39 | GO:0043531 | molecular_function | ADP binding | 0.029912312 | 1 | 71 |
Module180 | 18 | 40 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.032903279 | 3 | 2185 |
Module180 | 18 | 41 | GO:0003677 | molecular_function | DNA binding | 0.037444524 | 3 | 1891 |
Module180 | 18 | 42 | GO:0008219 | biological_process | cell death | 0.040876302 | 1 | 112 |
Module180 | 18 | 43 | GO:0016265 | biological_process | death | 0.040876302 | 1 | 112 |
Module180 | 18 | 44 | GO:0015035 | molecular_function | protein disulfide oxidoreductase activity | 0.047243273 | 1 | 113 |
Module180 | 18 | 45 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.047722657 | 3 | 2507 |
Module180 | 18 | 46 | GO:0010467 | biological_process | gene expression | 0.047978218 | 3 | 2512 |
Module180 | 18 | 47 | GO:0015036 | molecular_function | disulfide oxidoreductase activity | 0.048470976 | 1 | 116 |
Module180 | 18 | 48 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.048697968 | 3 | 2526 |
Module180 | 18 | 49 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.048801293 | 3 | 2528 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G038436 | GRMZM2G082335 | 0.0542 |
GRMZM2G046755 | GRMZM2G049785 | 0.0468 |
GRMZM2G046755 | GRMZM2G429231 | 0.0361 |
GRMZM2G049785 | GRMZM2G053742 | 0.0353 |
GRMZM2G049785 | GRMZM2G131389 | 0.0977 |
GRMZM2G049785 | GRMZM2G306727 | 0.0374 |
GRMZM2G049785 | abi5 | 0.0875 |
GRMZM2G049785 | GRMZM2G386987 | 0.0485 |
GRMZM2G049785 | GRMZM2G429231 | 0.1089 |
GRMZM2G053742 | GRMZM2G131389 | 0.0358 |
GRMZM2G053742 | GRMZM2G169391 | 0.04 |
GRMZM2G053742 | abi5 | 0.0737 |
GRMZM2G053742 | GRMZM2G429231 | 0.0473 |
GRMZM2G081017 | GRMZM2G082335 | 0.0408 |
GRMZM2G082335 | nactf76 | 0.0446 |
GRMZM2G128491 | GRMZM2G107495 | 0.0383 |
GRMZM2G107495 | abi5 | 0.0419 |
GRMZM2G131389 | abi5 | 0.0702 |
GRMZM2G131389 | GRMZM2G386582 | 0.0564 |
GRMZM2G131389 | GRMZM2G429231 | 0.1122 |
GRMZM2G306727 | GRMZM2G429231 | 0.0483 |
nactf76 | GRMZM2G023387 | 0.0351 |
nactf76 | abi5 | 0.058 |
nactf76 | GRMZM2G386987 | 0.0551 |
abi5 | bzip102 | 0.0362 |
abi5 | GRMZM2G386987 | 0.0409 |
abi5 | GRMZM2G429231 | 0.0784 |
GRMZM2G386582 | GRMZM2G429231 | 0.0495 |
GRMZM2G386987 | GRMZM2G429231 | 0.0397 |