This page contains information for Module183, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G000842 | bzip87 | Module183 | AT1G08320 | TGA9 | TGACG (TGA) motif-binding protein 9 | bZIP transcription factor family protein | bZIP |
GRMZM2G040736 | crr1 | Module183 | AT1G59940 | ARR3 | response regulator 3 | response regulator 3 | Orphans |
AC210595.3_FG004 | Module183 | AT4G20260 | PCAP1 | plasma-membrane associated cation-binding protein 1 | plasma-membrane associated cation-binding protein 1 | ||
GRMZM2G060216 | lg2 | Module183 | AT1G08320 | TGA9 | TGACG (TGA) motif-binding protein 9 | bZIP transcription factor family protein | bZIP |
AC232238.2_FG004 | lrs1 | Module183 | AT1G08320 | TGA9 | TGACG (TGA) motif-binding protein 9 | bZIP transcription factor family protein | bZIP |
GRMZM2G083717 | wrky10 | Module183 | AT1G30650 | WRKY14 | WRKY DNA-binding protein 14 | WRKY DNA-binding protein 14 | WRKY |
GRMZM2G096171 | crr7 | Module183 | AT1G59940 | ARR3 | response regulator 3 | response regulator 3 | Orphans |
GRMZM2G129954 | Module183 | AT3G57040 | ARR9 | response regulator 9 | response regulator 9 | Orphans | |
GRMZM2G148495 | Module183 | ||||||
GRMZM2G148499 | Module183 | ||||||
GRMZM2G156019 | Module183 | AT3G57040 | ARR9 | response regulator 9 | response regulator 9 | Orphans | |
GRMZM2G158140 | Module183 | AT1G59940 | ARR3 | response regulator 3 | response regulator 3 | Orphans | |
GRMZM2G179827 | Module183 | AT1G10470 | ARR4 | response regulator 4 | response regulator 4 | Orphans | |
GRMZM2G319187 | crr4 | Module183 | AT2G41310 | RR3 | response regulator 3 | response regulator 3 | Orphans |
GRMZM2G392101 | crr2 | Module183 | AT1G10470 | ARR4 | response regulator 4 | response regulator 4 | Orphans |
GRMZM2G400281 | Module183 | AT1G80730 | ZFP1 | zinc-finger protein 1 | zinc-finger protein 1 | C2H2 | |
GRMZM6G980248 | crr5 | Module183 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module183 | 17 | 1 | GO:0000156 | molecular_function | phosphorelay response regulator activity | 3.08E-18 | 8 | 47 |
Module183 | 17 | 2 | GO:0005057 | molecular_function | receptor signaling protein activity | 4.23E-16 | 8 | 84 |
Module183 | 17 | 3 | GO:0000160 | biological_process | phosphorelay signal transduction system | 5.80E-16 | 8 | 81 |
Module183 | 17 | 4 | GO:0004871 | molecular_function | signal transducer activity | 5.59E-14 | 8 | 152 |
Module183 | 17 | 5 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 5.81E-13 | 12 | 1293 |
Module183 | 17 | 6 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 5.81E-13 | 12 | 1293 |
Module183 | 17 | 7 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 5.81E-13 | 12 | 1293 |
Module183 | 17 | 8 | GO:0051252 | biological_process | regulation of RNA metabolic process | 6.44E-13 | 12 | 1304 |
Module183 | 17 | 9 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 8.39E-13 | 12 | 1333 |
Module183 | 17 | 10 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 1.21E-12 | 12 | 1374 |
Module183 | 17 | 11 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 1.21E-12 | 12 | 1374 |
Module183 | 17 | 12 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 1.61E-12 | 12 | 1407 |
Module183 | 17 | 13 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 1.64E-12 | 12 | 1409 |
Module183 | 17 | 14 | GO:0010468 | biological_process | regulation of gene expression | 1.71E-12 | 12 | 1414 |
Module183 | 17 | 15 | GO:0097659 | biological_process | nucleic acid-templated transcription | 1.71E-12 | 12 | 1414 |
Module183 | 17 | 16 | GO:0006351 | biological_process | transcription, DNA-templated | 1.71E-12 | 12 | 1414 |
Module183 | 17 | 17 | GO:0032774 | biological_process | RNA biosynthetic process | 1.78E-12 | 12 | 1419 |
Module183 | 17 | 18 | GO:0009889 | biological_process | regulation of biosynthetic process | 1.83E-12 | 12 | 1422 |
Module183 | 17 | 19 | GO:0080090 | biological_process | regulation of primary metabolic process | 4.31E-12 | 12 | 1527 |
Module183 | 17 | 20 | GO:0035556 | biological_process | intracellular signal transduction | 4.48E-12 | 8 | 242 |
Module183 | 17 | 21 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 4.48E-12 | 12 | 1532 |
Module183 | 17 | 22 | GO:0031323 | biological_process | regulation of cellular metabolic process | 5.32E-12 | 12 | 1554 |
Module183 | 17 | 23 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 7.51E-12 | 12 | 1599 |
Module183 | 17 | 24 | GO:0019222 | biological_process | regulation of metabolic process | 2.40E-11 | 12 | 1761 |
Module183 | 17 | 25 | GO:0018130 | biological_process | heterocycle biosynthetic process | 3.21E-11 | 12 | 1804 |
Module183 | 17 | 26 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 3.50E-11 | 12 | 1817 |
Module183 | 17 | 27 | GO:0016070 | biological_process | RNA metabolic process | 4.46E-11 | 12 | 1854 |
Module183 | 17 | 28 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 6.97E-11 | 12 | 1924 |
Module183 | 17 | 29 | GO:0090304 | biological_process | nucleic acid metabolic process | 3.22E-10 | 12 | 2185 |
Module183 | 17 | 30 | GO:0050794 | biological_process | regulation of cellular process | 9.05E-10 | 12 | 2381 |
Module183 | 17 | 31 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 1.68E-09 | 12 | 2507 |
Module183 | 17 | 32 | GO:0010467 | biological_process | gene expression | 1.72E-09 | 12 | 2512 |
Module183 | 17 | 33 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 1.84E-09 | 12 | 2526 |
Module183 | 17 | 34 | GO:0009059 | biological_process | macromolecule biosynthetic process | 1.86E-09 | 12 | 2528 |
Module183 | 17 | 35 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 2.57E-09 | 12 | 2597 |
Module183 | 17 | 36 | GO:0050789 | biological_process | regulation of biological process | 5.14E-09 | 12 | 2751 |
Module183 | 17 | 37 | GO:0046483 | biological_process | heterocycle metabolic process | 8.41E-09 | 12 | 2866 |
Module183 | 17 | 38 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 1.01E-08 | 12 | 2909 |
Module183 | 17 | 39 | GO:0065007 | biological_process | biological regulation | 1.08E-08 | 12 | 2926 |
Module183 | 17 | 40 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 1.45E-08 | 12 | 2999 |
Module183 | 17 | 41 | GO:0007165 | biological_process | signal transduction | 2.03E-08 | 8 | 697 |
Module183 | 17 | 42 | GO:0023052 | biological_process | signaling | 2.24E-08 | 8 | 706 |
Module183 | 17 | 43 | GO:0044700 | biological_process | single organism signaling | 2.24E-08 | 8 | 706 |
Module183 | 17 | 44 | GO:0007154 | biological_process | cell communication | 1.08E-07 | 8 | 863 |
Module183 | 17 | 45 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 1.08E-07 | 12 | 3545 |
Module183 | 17 | 46 | GO:0044249 | biological_process | cellular biosynthetic process | 1.09E-07 | 12 | 3546 |
Module183 | 17 | 47 | GO:1901576 | biological_process | organic substance biosynthetic process | 1.33E-07 | 12 | 3606 |
Module183 | 17 | 48 | GO:0009058 | biological_process | biosynthetic process | 2.20E-07 | 12 | 3760 |
Module183 | 17 | 49 | GO:0006807 | biological_process | nitrogen compound metabolic process | 3.28E-07 | 12 | 3887 |
Module183 | 17 | 50 | GO:0051716 | biological_process | cellular response to stimulus | 9.89E-07 | 8 | 1149 |
Module183 | 17 | 51 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 6.14E-06 | 12 | 4961 |
Module183 | 17 | 52 | GO:0009735 | biological_process | response to cytokinin | 9.12E-06 | 3 | 48 |
Module183 | 17 | 53 | GO:0007623 | biological_process | circadian rhythm | 1.98E-05 | 3 | 62 |
Module183 | 17 | 54 | GO:0048511 | biological_process | rhythmic process | 1.98E-05 | 3 | 62 |
Module183 | 17 | 55 | GO:0043170 | biological_process | macromolecule metabolic process | 2.04E-05 | 12 | 5482 |
Module183 | 17 | 56 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.000356793 | 4 | 460 |
Module183 | 17 | 57 | GO:0044237 | biological_process | cellular metabolic process | 0.000420548 | 12 | 7053 |
Module183 | 17 | 58 | GO:0010114 | biological_process | response to red light | 0.000704496 | 2 | 45 |
Module183 | 17 | 59 | GO:0044238 | biological_process | primary metabolic process | 0.000707253 | 12 | 7365 |
Module183 | 17 | 60 | GO:0071704 | biological_process | organic substance metabolic process | 0.001402323 | 12 | 7797 |
Module183 | 17 | 61 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.001576243 | 4 | 683 |
Module183 | 17 | 62 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.001584804 | 4 | 684 |
Module183 | 17 | 63 | GO:0050896 | biological_process | response to stimulus | 0.003797875 | 8 | 3528 |
Module183 | 17 | 64 | GO:0009639 | biological_process | response to red or far red light | 0.006790246 | 2 | 142 |
Module183 | 17 | 65 | GO:0009736 | biological_process | cytokinin-activated signaling pathway | 0.007988124 | 1 | 9 |
Module183 | 17 | 66 | GO:0071368 | biological_process | cellular response to cytokinin stimulus | 0.008872073 | 1 | 10 |
Module183 | 17 | 67 | GO:0009987 | biological_process | cellular process | 0.012466396 | 12 | 9353 |
Module183 | 17 | 68 | GO:0008152 | biological_process | metabolic process | 0.022542312 | 12 | 9826 |
Module183 | 17 | 69 | GO:0009536 | cellular_component | plastid | 0.02829421 | 3 | 2141 |
Module183 | 17 | 70 | GO:0009725 | biological_process | response to hormone | 0.029659405 | 3 | 790 |
Module183 | 17 | 71 | GO:0044763 | biological_process | single-organism cellular process | 0.029885186 | 8 | 4840 |
Module183 | 17 | 72 | GO:0009719 | biological_process | response to endogenous stimulus | 0.033602929 | 3 | 829 |
Module183 | 17 | 73 | GO:0005634 | cellular_component | nucleus | 0.040048702 | 3 | 2423 |
Module183 | 17 | 74 | GO:0005739 | cellular_component | mitochondrion | 0.040113476 | 2 | 916 |
Module183 | 17 | 75 | GO:0010033 | biological_process | response to organic substance | 0.04895439 | 3 | 961 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
bzip87 | lg2 | 0.0747 |
crr1 | lg2 | 0.039 |
crr1 | crr7 | 0.0476 |
crr1 | GRMZM2G129954 | 0.072 |
crr1 | GRMZM2G148495 | 0.041 |
crr1 | GRMZM2G156019 | 0.0357 |
crr1 | GRMZM2G179827 | 0.0598 |
crr1 | crr2 | 0.1423 |
crr1 | crr5 | 0.0457 |
AC210595.3_FG004 | GRMZM2G156019 | 0.0368 |
lg2 | lrs1 | 0.0517 |
wrky10 | GRMZM2G158140 | 0.0415 |
crr7 | GRMZM2G129954 | 0.0694 |
crr7 | GRMZM2G156019 | 0.0373 |
crr7 | GRMZM2G179827 | 0.0668 |
crr7 | crr2 | 0.0702 |
crr7 | crr5 | 0.042 |
GRMZM2G129954 | GRMZM2G148495 | 0.0363 |
GRMZM2G129954 | GRMZM2G156019 | 0.0463 |
GRMZM2G129954 | GRMZM2G179827 | 0.0667 |
GRMZM2G129954 | crr4 | 0.0464 |
GRMZM2G129954 | crr2 | 0.0903 |
GRMZM2G129954 | crr5 | 0.0581 |
GRMZM2G148495 | GRMZM2G148499 | 0.0425 |
GRMZM2G148495 | crr2 | 0.0469 |
GRMZM2G156019 | crr4 | 0.0563 |
GRMZM2G156019 | crr2 | 0.0592 |
GRMZM2G156019 | crr5 | 0.0776 |
GRMZM2G158140 | GRMZM2G179827 | 0.0625 |
GRMZM2G158140 | crr2 | 0.0496 |
GRMZM2G179827 | crr2 | 0.0722 |
crr4 | crr2 | 0.0437 |
crr2 | GRMZM2G400281 | 0.037 |
crr2 | crr5 | 0.0598 |