This page contains information for Module187, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G036708 | Module187 | AT3G61440 | CYSC1 | cysteine synthase C1 | cysteine synthase C1 | ||
GRMZM2G058289 | Module187 | AT3G04470 | AT3G04470 | Ankyrin repeat family protein | |||
GRMZM2G034005 | Module187 | AT3G04470 | AT3G04470 | Ankyrin repeat family protein | |||
GRMZM2G076484 | Module187 | AT1G31970 | STRS1 | STRESS RESPONSE SUPPRESSOR 1 | DEA(D/H)-box RNA helicase family protein | ||
GRMZM2G027282 | Module187 | AT3G05530 | RPT5A | regulatory particle triple-A ATPase 5A | regulatory particle triple-A ATPase 5A | ||
GRMZM2G078641 | grf2 | Module187 | AT3G02520 | GRF7 | general regulatory factor 7 | general regulatory factor 7 | |
GRMZM2G102499 | grf1 | Module187 | AT3G02520 | GRF7 | general regulatory factor 7 | general regulatory factor 7 | |
GRMZM2G091155 | Module187 | AT3G02520 | GRF7 | general regulatory factor 7 | general regulatory factor 7 | ||
GRMZM2G108285 | ippi1 | Module187 | AT3G02780 | IPP2 | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 | |
GRMZM2G165511 | Module187 | AT3G08690 | UBC11 | ubiquitin-conjugating enzyme 11 | ubiquitin-conjugating enzyme 11 | ||
GRMZM2G166035 | Module187 | AT4G31750 | WIN2 | HOPW1-1-interacting 2 | HOPW1-1-interacting 2 | ||
GRMZM2G171372 | Module187 | AT2G47640 | AT2G47640 | Small nuclear ribonucleoprotein family protein | |||
GRMZM2G056393 | Module187 | AT1G45332 | AT1G45332 | Translation elongation factor EFG/EF2 protein | |||
GRMZM2G181273 | Module187 | AT4G17830 | AT4G17830 | Peptidase M20/M25/M40 family protein | |||
GRMZM5G829894 | Module187 | AT4G31750 | WIN2 | HOPW1-1-interacting 2 | HOPW1-1-interacting 2 | ||
GRMZM5G866947 | Module187 | AT3G08690 | UBC11 | ubiquitin-conjugating enzyme 11 | ubiquitin-conjugating enzyme 11 | ||
GRMZM6G411492 | Module187 | AT2G32730 | AT2G32730 | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module187 | 17 | 1 | GO:0019904 | molecular_function | protein domain specific binding | 2.75E-07 | 3 | 14 |
Module187 | 17 | 2 | GO:0005635 | cellular_component | nuclear envelope | 0.000101356 | 3 | 77 |
Module187 | 17 | 3 | GO:0005739 | cellular_component | mitochondrion | 0.000423384 | 6 | 916 |
Module187 | 17 | 4 | GO:0046686 | biological_process | response to cadmium ion | 0.000423786 | 4 | 433 |
Module187 | 17 | 5 | GO:0010038 | biological_process | response to metal ion | 0.000840947 | 4 | 519 |
Module187 | 17 | 6 | GO:0005886 | cellular_component | plasma membrane | 0.001026503 | 8 | 2055 |
Module187 | 17 | 7 | GO:0004722 | molecular_function | protein serine/threonine phosphatase activity | 0.001735859 | 2 | 64 |
Module187 | 17 | 8 | GO:0019499 | biological_process | cyanide metabolic process | 0.002669236 | 1 | 3 |
Module187 | 17 | 9 | GO:0004452 | molecular_function | isopentenyl-diphosphate delta-isomerase activity | 0.002923441 | 1 | 3 |
Module187 | 17 | 10 | GO:0006470 | biological_process | protein dephosphorylation | 0.00336104 | 2 | 99 |
Module187 | 17 | 11 | GO:0071944 | cellular_component | cell periphery | 0.003477453 | 8 | 2455 |
Module187 | 17 | 12 | GO:0016881 | molecular_function | acid-amino acid ligase activity | 0.004508143 | 2 | 104 |
Module187 | 17 | 13 | GO:0010035 | biological_process | response to inorganic substance | 0.004725415 | 4 | 829 |
Module187 | 17 | 14 | GO:0046490 | biological_process | isopentenyl diphosphate metabolic process | 0.005331939 | 1 | 6 |
Module187 | 17 | 15 | GO:0009240 | biological_process | isopentenyl diphosphate biosynthetic process | 0.005331939 | 1 | 6 |
Module187 | 17 | 16 | GO:0004721 | molecular_function | phosphoprotein phosphatase activity | 0.006647109 | 2 | 127 |
Module187 | 17 | 17 | GO:0004124 | molecular_function | cysteine synthase activity | 0.006808899 | 1 | 7 |
Module187 | 17 | 18 | GO:0044248 | biological_process | cellular catabolic process | 0.007373629 | 3 | 471 |
Module187 | 17 | 19 | GO:0016863 | molecular_function | intramolecular oxidoreductase activity, transposing C=C bonds | 0.007778043 | 1 | 8 |
Module187 | 17 | 20 | GO:0010255 | biological_process | glucose mediated signaling pathway | 0.007988124 | 1 | 9 |
Module187 | 17 | 21 | GO:0009757 | biological_process | hexose mediated signaling | 0.007988124 | 1 | 9 |
Module187 | 17 | 22 | GO:0016311 | biological_process | dephosphorylation | 0.008043394 | 2 | 155 |
Module187 | 17 | 23 | GO:0001678 | biological_process | cellular glucose homeostasis | 0.008872073 | 1 | 10 |
Module187 | 17 | 24 | GO:0071326 | biological_process | cellular response to monosaccharide stimulus | 0.008872073 | 1 | 10 |
Module187 | 17 | 25 | GO:0071331 | biological_process | cellular response to hexose stimulus | 0.008872073 | 1 | 10 |
Module187 | 17 | 26 | GO:0071333 | biological_process | cellular response to glucose stimulus | 0.008872073 | 1 | 10 |
Module187 | 17 | 27 | GO:0042593 | biological_process | glucose homeostasis | 0.0097553 | 1 | 11 |
Module187 | 17 | 28 | GO:0030532 | cellular_component | small nuclear ribonucleoprotein complex | 0.009815873 | 1 | 8 |
Module187 | 17 | 29 | GO:0044428 | cellular_component | nuclear part | 0.0101891 | 4 | 738 |
Module187 | 17 | 30 | GO:0016879 | molecular_function | ligase activity, forming carbon-nitrogen bonds | 0.010496186 | 2 | 161 |
Module187 | 17 | 31 | GO:0006535 | biological_process | cysteine biosynthetic process from serine | 0.010637805 | 1 | 12 |
Module187 | 17 | 32 | GO:0042221 | biological_process | response to chemical | 0.011150405 | 5 | 1681 |
Module187 | 17 | 33 | GO:0016787 | molecular_function | hydrolase activity | 0.012076902 | 7 | 2828 |
Module187 | 17 | 34 | GO:0033500 | biological_process | carbohydrate homeostasis | 0.012400654 | 1 | 14 |
Module187 | 17 | 35 | GO:0051603 | biological_process | proteolysis involved in cellular protein catabolic process | 0.013116289 | 2 | 200 |
Module187 | 17 | 36 | GO:0019344 | biological_process | cysteine biosynthetic process | 0.013280998 | 1 | 15 |
Module187 | 17 | 37 | GO:0044257 | biological_process | cellular protein catabolic process | 0.013747982 | 2 | 205 |
Module187 | 17 | 38 | GO:0005524 | molecular_function | ATP binding | 0.01441593 | 6 | 2216 |
Module187 | 17 | 39 | GO:1901575 | biological_process | organic substance catabolic process | 0.014425642 | 3 | 602 |
Module187 | 17 | 40 | GO:0008540 | cellular_component | proteasome regulatory particle, base subcomplex | 0.015905548 | 1 | 13 |
Module187 | 17 | 41 | GO:0032559 | molecular_function | adenyl ribonucleotide binding | 0.016555846 | 6 | 2282 |
Module187 | 17 | 42 | GO:0030554 | molecular_function | adenyl nucleotide binding | 0.016692502 | 6 | 2286 |
Module187 | 17 | 43 | GO:0010182 | biological_process | sugar mediated signaling pathway | 0.016795186 | 1 | 19 |
Module187 | 17 | 44 | GO:0009756 | biological_process | carbohydrate mediated signaling | 0.016795186 | 1 | 19 |
Module187 | 17 | 45 | GO:0006534 | biological_process | cysteine metabolic process | 0.016795186 | 1 | 19 |
Module187 | 17 | 46 | GO:0044265 | biological_process | cellular macromolecule catabolic process | 0.017668694 | 2 | 234 |
Module187 | 17 | 47 | GO:0009056 | biological_process | catabolic process | 0.017727392 | 3 | 650 |
Module187 | 17 | 48 | GO:0030163 | biological_process | protein catabolic process | 0.018243152 | 2 | 238 |
Module187 | 17 | 49 | GO:0022624 | cellular_component | proteasome accessory complex | 0.018331724 | 1 | 15 |
Module187 | 17 | 50 | GO:0005838 | cellular_component | proteasome regulatory particle | 0.018331724 | 1 | 15 |
Module187 | 17 | 51 | GO:0050896 | biological_process | response to stimulus | 0.018402028 | 7 | 3528 |
Module187 | 17 | 52 | GO:0042742 | biological_process | defense response to bacterium | 0.019267656 | 2 | 245 |
Module187 | 17 | 53 | GO:0016791 | molecular_function | phosphatase activity | 0.019970665 | 2 | 226 |
Module187 | 17 | 54 | GO:0016846 | molecular_function | carbon-sulfur lyase activity | 0.02029651 | 1 | 21 |
Module187 | 17 | 55 | GO:0009070 | biological_process | serine family amino acid biosynthetic process | 0.020297897 | 1 | 23 |
Module187 | 17 | 56 | GO:0071322 | biological_process | cellular response to carbohydrate stimulus | 0.021171786 | 1 | 24 |
Module187 | 17 | 57 | GO:0006563 | biological_process | L-serine metabolic process | 0.023789167 | 1 | 27 |
Module187 | 17 | 58 | GO:0035639 | molecular_function | purine ribonucleoside triphosphate binding | 0.024253831 | 6 | 2478 |
Module187 | 17 | 59 | GO:0032550 | molecular_function | purine ribonucleoside binding | 0.027335097 | 6 | 2544 |
Module187 | 17 | 60 | GO:0032555 | molecular_function | purine ribonucleotide binding | 0.027335097 | 6 | 2544 |
Module187 | 17 | 61 | GO:0001883 | molecular_function | purine nucleoside binding | 0.027335097 | 6 | 2544 |
Module187 | 17 | 62 | GO:0032549 | molecular_function | ribonucleoside binding | 0.027677204 | 6 | 2551 |
Module187 | 17 | 63 | GO:0017076 | molecular_function | purine nucleotide binding | 0.02772632 | 6 | 2552 |
Module187 | 17 | 64 | GO:0001882 | molecular_function | nucleoside binding | 0.02772632 | 6 | 2552 |
Module187 | 17 | 65 | GO:0009617 | biological_process | response to bacterium | 0.027962785 | 2 | 299 |
Module187 | 17 | 66 | GO:0009749 | biological_process | response to glucose | 0.028137215 | 1 | 32 |
Module187 | 17 | 67 | GO:0032553 | molecular_function | ribonucleotide binding | 0.029279279 | 6 | 2583 |
Module187 | 17 | 68 | GO:0097367 | molecular_function | carbohydrate derivative binding | 0.030627634 | 6 | 2609 |
Module187 | 17 | 69 | GO:0042578 | molecular_function | phosphoric ester hydrolase activity | 0.031344302 | 2 | 288 |
Module187 | 17 | 70 | GO:0000097 | biological_process | sulfur amino acid biosynthetic process | 0.031602864 | 1 | 36 |
Module187 | 17 | 71 | GO:0009746 | biological_process | response to hexose | 0.031602864 | 1 | 36 |
Module187 | 17 | 72 | GO:0034284 | biological_process | response to monosaccharide | 0.032467504 | 1 | 37 |
Module187 | 17 | 73 | GO:0009057 | biological_process | macromolecule catabolic process | 0.032995644 | 2 | 327 |
Module187 | 17 | 74 | GO:0010498 | biological_process | proteasomal protein catabolic process | 0.034194662 | 1 | 39 |
Module187 | 17 | 75 | GO:0009570 | cellular_component | chloroplast stroma | 0.035140163 | 3 | 607 |
Module187 | 17 | 76 | GO:0016874 | molecular_function | ligase activity | 0.035876637 | 2 | 310 |
Module187 | 17 | 77 | GO:0017111 | molecular_function | nucleoside-triphosphatase activity | 0.036649204 | 3 | 771 |
Module187 | 17 | 78 | GO:0009532 | cellular_component | plastid stroma | 0.037407692 | 3 | 622 |
Module187 | 17 | 79 | GO:0005618 | cellular_component | cell wall | 0.037407692 | 3 | 622 |
Module187 | 17 | 80 | GO:0030312 | cellular_component | external encapsulating structure | 0.037561584 | 3 | 623 |
Module187 | 17 | 81 | GO:0009069 | biological_process | serine family amino acid metabolic process | 0.039359193 | 1 | 45 |
Module187 | 17 | 82 | GO:0044419 | biological_process | interspecies interaction between organisms | 0.040217483 | 1 | 46 |
Module187 | 17 | 83 | GO:0003746 | molecular_function | translation elongation factor activity | 0.041144885 | 1 | 43 |
Module187 | 17 | 84 | GO:0016462 | molecular_function | pyrophosphatase activity | 0.0423058 | 3 | 816 |
Module187 | 17 | 85 | GO:0016860 | molecular_function | intramolecular oxidoreductase activity | 0.044890523 | 1 | 47 |
Module187 | 17 | 86 | GO:0016818 | molecular_function | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.045497917 | 3 | 840 |
Module187 | 17 | 87 | GO:0098542 | biological_process | defense response to other organism | 0.04679529 | 2 | 396 |
Module187 | 17 | 88 | GO:0080147 | biological_process | root hair cell development | 0.047910519 | 1 | 55 |
Module187 | 17 | 89 | GO:0016817 | molecular_function | hydrolase activity, acting on acid anhydrides | 0.048110761 | 3 | 859 |
Module187 | 17 | 90 | GO:0000096 | biological_process | sulfur amino acid metabolic process | 0.048761802 | 1 | 56 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G036708 | ippi1 | 0.0397 |
GRMZM2G058289 | GRMZM2G034005 | 0.0541 |
GRMZM2G034005 | grf2 | 0.0358 |
GRMZM2G034005 | GRMZM2G166035 | 0.0352 |
GRMZM2G076484 | GRMZM2G027282 | 0.0407 |
GRMZM2G076484 | grf2 | 0.0358 |
GRMZM2G076484 | GRMZM2G181273 | 0.0442 |
GRMZM2G027282 | grf2 | 0.0508 |
GRMZM2G027282 | GRMZM2G171372 | 0.0371 |
GRMZM2G027282 | GRMZM2G181273 | 0.0564 |
GRMZM2G027282 | GRMZM6G411492 | 0.0355 |
grf2 | grf1 | 0.1112 |
grf1 | GRMZM2G091155 | 0.0618 |
grf1 | ippi1 | 0.0466 |
grf1 | GRMZM2G165511 | 0.0355 |
GRMZM2G165511 | GRMZM5G866947 | 0.0397 |
GRMZM2G166035 | GRMZM5G829894 | 0.0533 |
GRMZM2G171372 | GRMZM2G056393 | 0.0361 |