This page contains information for Module192, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC206840.3_FG002 | Module192 | AT3G05570 | AT3G05570 | ||||
AC205673.3_FG006 | Module192 | ||||||
AC211390.3_FG001 | Module192 | AT1G26850 | AT1G26850 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | |||
GRMZM2G039954 | Module192 | AT5G12240 | AT5G12240 | ||||
GRMZM2G052750 | Module192 | AT5G28350 | AT5G28350 | Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor | |||
GRMZM2G058573 | Module192 | AT5G55760 | SRT1 | sirtuin 1 | sirtuin 1 | ||
GRMZM2G077673 | bas1 | Module192 | AT5G64370 | BETA-UP | beta-ureidopropionase | beta-ureidopropionase | |
GRMZM2G060284 | Module192 | AT1G75510 | AT1G75510 | Transcription initiation factor IIF, beta subunit | |||
GRMZM2G091293 | Module192 | ||||||
GRMZM2G133986 | Module192 | AT3G05480 | RAD9 | cell cycle checkpoint control protein family | |||
GRMZM2G162079 | Module192 | AT2G23093 | AT2G23093 | Major facilitator superfamily protein | |||
GRMZM2G314563 | Module192 | AT5G17250 | AT5G17250 | Alkaline-phosphatase-like family protein | |||
GRMZM2G380195 | Module192 | AT3G46790 | CRR2 | CHLORORESPIRATORY REDUCTION 2 | Tetratricopeptide repeat (TPR)-like superfamily protein | ||
GRMZM2G128074 | Module192 | AT4G37870 | PCK1 | phosphoenolpyruvate carboxykinase 1 | phosphoenolpyruvate carboxykinase 1 | ||
GRMZM2G393453 | Module192 | ||||||
GRMZM2G469469 | Module192 | AT2G32040 | AT2G32040 | Major facilitator superfamily protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module192 | 16 | 1 | GO:0030896 | cellular_component | checkpoint clamp complex | 0.001136848 | 1 | 2 |
Module192 | 16 | 2 | GO:0005674 | cellular_component | transcription factor TFIIF complex | 0.001136848 | 1 | 2 |
Module192 | 16 | 3 | GO:0070403 | molecular_function | NAD+ binding | 0.001279707 | 1 | 3 |
Module192 | 16 | 4 | GO:0015231 | molecular_function | 5-formyltetrahydrofolate transporter activity | 0.001279707 | 1 | 3 |
Module192 | 16 | 5 | GO:0046113 | biological_process | nucleobase catabolic process | 0.001335212 | 1 | 3 |
Module192 | 16 | 6 | GO:0015885 | biological_process | 5-formyltetrahydrofolate transport | 0.001335212 | 1 | 3 |
Module192 | 16 | 7 | GO:0006212 | biological_process | uracil catabolic process | 0.001335212 | 1 | 3 |
Module192 | 16 | 8 | GO:0006208 | biological_process | pyrimidine nucleobase catabolic process | 0.001335212 | 1 | 3 |
Module192 | 16 | 9 | GO:0000077 | biological_process | DNA damage checkpoint | 0.001779953 | 1 | 4 |
Module192 | 16 | 10 | GO:0008517 | molecular_function | folic acid transporter activity | 0.002132066 | 1 | 5 |
Module192 | 16 | 11 | GO:0004612 | molecular_function | phosphoenolpyruvate carboxykinase (ATP) activity | 0.002132066 | 1 | 5 |
Module192 | 16 | 12 | GO:0031570 | biological_process | DNA integrity checkpoint | 0.002224528 | 1 | 5 |
Module192 | 16 | 13 | GO:0051180 | biological_process | vitamin transport | 0.002224528 | 1 | 5 |
Module192 | 16 | 14 | GO:0019860 | biological_process | uracil metabolic process | 0.002224528 | 1 | 5 |
Module192 | 16 | 15 | GO:0015884 | biological_process | folic acid transport | 0.002224528 | 1 | 5 |
Module192 | 16 | 16 | GO:0051183 | molecular_function | vitamin transporter activity | 0.002558011 | 1 | 6 |
Module192 | 16 | 17 | GO:0031425 | biological_process | chloroplast RNA processing | 0.002668939 | 1 | 6 |
Module192 | 16 | 18 | GO:0072529 | biological_process | pyrimidine-containing compound catabolic process | 0.003113184 | 1 | 7 |
Module192 | 16 | 19 | GO:0000794 | cellular_component | condensed nuclear chromosome | 0.003974257 | 1 | 7 |
Module192 | 16 | 20 | GO:0000075 | biological_process | cell cycle checkpoint | 0.004888517 | 1 | 11 |
Module192 | 16 | 21 | GO:0072337 | biological_process | modified amino acid transport | 0.005331939 | 1 | 12 |
Module192 | 16 | 22 | GO:0043562 | biological_process | cellular response to nitrogen levels | 0.005331939 | 1 | 12 |
Module192 | 16 | 23 | GO:0004611 | molecular_function | phosphoenolpyruvate carboxykinase activity | 0.005959966 | 1 | 14 |
Module192 | 16 | 24 | GO:0006094 | biological_process | gluconeogenesis | 0.006218288 | 1 | 14 |
Module192 | 16 | 25 | GO:0006206 | biological_process | pyrimidine nucleobase metabolic process | 0.006218288 | 1 | 14 |
Module192 | 16 | 26 | GO:0006367 | biological_process | transcription initiation from RNA polymerase II promoter | 0.007103978 | 1 | 16 |
Module192 | 16 | 27 | GO:0051184 | molecular_function | cofactor transporter activity | 0.007233132 | 1 | 17 |
Module192 | 16 | 28 | GO:0019319 | biological_process | hexose biosynthetic process | 0.007989011 | 1 | 18 |
Module192 | 16 | 29 | GO:0051181 | biological_process | cofactor transport | 0.00843128 | 1 | 19 |
Module192 | 16 | 30 | GO:0000793 | cellular_component | condensed chromosome | 0.009064667 | 1 | 16 |
Module192 | 16 | 31 | GO:0006835 | biological_process | dicarboxylic acid transport | 0.010198717 | 1 | 23 |
Module192 | 16 | 32 | GO:0009112 | biological_process | nucleobase metabolic process | 0.012844948 | 1 | 29 |
Module192 | 16 | 33 | GO:0046364 | biological_process | monosaccharide biosynthetic process | 0.013285413 | 1 | 30 |
Module192 | 16 | 34 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.014800678 | 4 | 2597 |
Module192 | 16 | 35 | GO:0044454 | cellular_component | nuclear chromosome part | 0.015818141 | 1 | 28 |
Module192 | 16 | 36 | GO:0006006 | biological_process | glucose metabolic process | 0.017242231 | 1 | 39 |
Module192 | 16 | 37 | GO:0042886 | biological_process | amide transport | 0.018996568 | 1 | 43 |
Module192 | 16 | 38 | GO:0006865 | biological_process | amino acid transport | 0.018996568 | 1 | 43 |
Module192 | 16 | 39 | GO:0016591 | cellular_component | DNA-directed RNA polymerase II, holoenzyme | 0.019180468 | 1 | 34 |
Module192 | 16 | 40 | GO:0044798 | cellular_component | nuclear transcription factor complex | 0.020858038 | 1 | 37 |
Module192 | 16 | 41 | GO:0090575 | cellular_component | RNA polymerase II transcription factor complex | 0.020858038 | 1 | 37 |
Module192 | 16 | 42 | GO:0046483 | biological_process | heterocycle metabolic process | 0.021144355 | 4 | 2866 |
Module192 | 16 | 43 | GO:0000228 | cellular_component | nuclear chromosome | 0.021416696 | 1 | 38 |
Module192 | 16 | 44 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.022306404 | 4 | 2909 |
Module192 | 16 | 45 | GO:0006366 | biological_process | transcription from RNA polymerase II promoter | 0.022497413 | 1 | 51 |
Module192 | 16 | 46 | GO:0072527 | biological_process | pyrimidine-containing compound metabolic process | 0.023370996 | 1 | 53 |
Module192 | 16 | 47 | GO:0006352 | biological_process | DNA-templated transcription, initiation | 0.023370996 | 1 | 53 |
Module192 | 16 | 48 | GO:0055029 | cellular_component | nuclear DNA-directed RNA polymerase complex | 0.023648675 | 1 | 42 |
Module192 | 16 | 49 | GO:0000428 | cellular_component | DNA-directed RNA polymerase complex | 0.023648675 | 1 | 42 |
Module192 | 16 | 50 | GO:0030880 | cellular_component | RNA polymerase complex | 0.023648675 | 1 | 42 |
Module192 | 16 | 51 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.024878232 | 4 | 2999 |
Module192 | 16 | 52 | GO:0005667 | cellular_component | transcription factor complex | 0.028099906 | 1 | 50 |
Module192 | 16 | 53 | GO:0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.030328072 | 1 | 72 |
Module192 | 16 | 54 | GO:0046700 | biological_process | heterocycle catabolic process | 0.030336264 | 1 | 69 |
Module192 | 16 | 55 | GO:0044270 | biological_process | cellular nitrogen compound catabolic process | 0.030770215 | 1 | 70 |
Module192 | 16 | 56 | GO:0051287 | molecular_function | NAD binding | 0.031159135 | 1 | 74 |
Module192 | 16 | 57 | GO:0046942 | biological_process | carboxylic acid transport | 0.031637632 | 1 | 72 |
Module192 | 16 | 58 | GO:0015849 | biological_process | organic acid transport | 0.031637632 | 1 | 72 |
Module192 | 16 | 59 | GO:0016831 | molecular_function | carboxy-lyase activity | 0.033234121 | 1 | 79 |
Module192 | 16 | 60 | GO:0019318 | biological_process | hexose metabolic process | 0.033370525 | 1 | 76 |
Module192 | 16 | 61 | GO:0005794 | cellular_component | Golgi apparatus | 0.03440897 | 2 | 542 |
Module192 | 16 | 62 | GO:0006397 | biological_process | mRNA processing | 0.038553706 | 1 | 88 |
Module192 | 16 | 63 | GO:0031669 | biological_process | cellular response to nutrient levels | 0.039845875 | 1 | 91 |
Module192 | 16 | 64 | GO:0061695 | cellular_component | transferase complex, transferring phosphorus-containing groups | 0.040253681 | 1 | 72 |
Module192 | 16 | 65 | GO:1901361 | biological_process | organic cyclic compound catabolic process | 0.041136598 | 1 | 94 |
Module192 | 16 | 66 | GO:0031981 | cellular_component | nuclear lumen | 0.041675473 | 2 | 601 |
Module192 | 16 | 67 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.044874376 | 4 | 3545 |
Module192 | 16 | 68 | GO:0031667 | biological_process | response to nutrient levels | 0.045000093 | 1 | 103 |
Module192 | 16 | 69 | GO:0015711 | biological_process | organic anion transport | 0.046285038 | 1 | 106 |
Module192 | 16 | 70 | GO:0005996 | biological_process | monosaccharide metabolic process | 0.048423411 | 1 | 111 |
Module192 | 16 | 71 | GO:0016071 | biological_process | mRNA metabolic process | 0.048423411 | 1 | 111 |
Module192 | 16 | 72 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 0.049277641 | 1 | 113 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC206840.3_FG002 | AC205673.3_FG006 | 0.0371 |
AC206840.3_FG002 | AC211390.3_FG001 | 0.0395 |
AC206840.3_FG002 | GRMZM2G039954 | 0.0393 |
AC206840.3_FG002 | GRMZM2G052750 | 0.0406 |
AC206840.3_FG002 | GRMZM2G058573 | 0.0378 |
AC206840.3_FG002 | GRMZM2G091293 | 0.0445 |
AC206840.3_FG002 | GRMZM2G133986 | 0.0415 |
AC206840.3_FG002 | GRMZM2G162079 | 0.0369 |
AC206840.3_FG002 | GRMZM2G380195 | 0.0369 |
AC205673.3_FG006 | GRMZM2G314563 | 0.0365 |
AC205673.3_FG006 | GRMZM2G393453 | 0.0363 |
AC211390.3_FG001 | bas1 | 0.0368 |
AC211390.3_FG001 | GRMZM2G469469 | 0.0381 |
bas1 | GRMZM2G060284 | 0.0385 |
GRMZM2G380195 | GRMZM2G128074 | 0.0352 |