This page contains information for Module196, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC233959.1_FG003 | Module196 | ||||||
GRMZM2G011789 | lec1 | Module196 | AT5G47670 | NF-YB6 | nuclear factor Y, subunit B6 | nuclear factor Y, subunit B6 | CCAAT |
GRMZM2G045082 | Module196 | ||||||
GRMZM2G079617 | Module196 | AT1G80170 | AT1G80170 | Pectin lyase-like superfamily protein | |||
GRMZM2G093175 | asn2 | Module196 | AT3G47340 | ASN1 | glutamine-dependent asparagine synthase 1 | glutamine-dependent asparagine synthase 1 | |
GRMZM2G104516 | Module196 | AT1G66140 | ZFP4 | zinc finger protein 4 | zinc finger protein 4 | C2H2 | |
GRMZM2G110242 | wab1 | Module196 | AT3G18550 | BRC1 | BRANCHED 1 | TCP family transcription factor | TCP |
GRMZM2G124663 | cadtfr7 | Module196 | AT5G47670 | NF-YB6 | nuclear factor Y, subunit B6 | nuclear factor Y, subunit B6 | CCAAT |
GRMZM2G127342 | Module196 | AT1G24400 | LHT2 | lysine histidine transporter 2 | lysine histidine transporter 2 | ||
GRMZM2G148467 | sbp21 | Module196 | AT1G27370 | SPL10 | squamosa promoter binding protein-like 10 | squamosa promoter binding protein-like 10 | SBP |
GRMZM2G154048 | Module196 | ||||||
GRMZM2G180190 | zfl2 | Module196 | AT5G61850 | LFY | LEAFY | floral meristem identity control protein LEAFY (LFY) | LFY |
GRMZM2G366873 | Module196 | AT5G54510 | DFL1 | DWARF IN LIGHT 1 | Auxin-responsive GH3 family protein | ||
GRMZM2G454022 | Module196 | AT4G29100 | AT4G29100 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | |||
GRMZM2G487036 | Module196 | ||||||
GRMZM5G837123 | Module196 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module196 | 16 | 1 | GO:0045723 | biological_process | positive regulation of fatty acid biosynthetic process | 0.00074195 | 1 | 2 |
Module196 | 16 | 2 | GO:0045923 | biological_process | positive regulation of fatty acid metabolic process | 0.00074195 | 1 | 2 |
Module196 | 16 | 3 | GO:0003677 | molecular_function | DNA binding | 0.000839487 | 5 | 1891 |
Module196 | 16 | 4 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.001104388 | 3 | 460 |
Module196 | 16 | 5 | GO:0046889 | biological_process | positive regulation of lipid biosynthetic process | 0.00111276 | 1 | 3 |
Module196 | 16 | 6 | GO:0045834 | biological_process | positive regulation of lipid metabolic process | 0.00111276 | 1 | 3 |
Module196 | 16 | 7 | GO:0031490 | molecular_function | chromatin DNA binding | 0.001462434 | 1 | 3 |
Module196 | 16 | 8 | GO:0043566 | molecular_function | structure-specific DNA binding | 0.001462434 | 1 | 3 |
Module196 | 16 | 9 | GO:0070981 | biological_process | L-asparagine biosynthetic process | 0.001483459 | 1 | 4 |
Module196 | 16 | 10 | GO:0070982 | biological_process | L-asparagine metabolic process | 0.001483459 | 1 | 4 |
Module196 | 16 | 11 | GO:0043617 | biological_process | cellular response to sucrose starvation | 0.001483459 | 1 | 4 |
Module196 | 16 | 12 | GO:0046983 | molecular_function | protein dimerization activity | 0.001736728 | 3 | 538 |
Module196 | 16 | 13 | GO:0046982 | molecular_function | protein heterodimerization activity | 0.00201348 | 2 | 142 |
Module196 | 16 | 14 | GO:0042304 | biological_process | regulation of fatty acid biosynthetic process | 0.002224528 | 1 | 6 |
Module196 | 16 | 15 | GO:0006528 | biological_process | asparagine metabolic process | 0.002224528 | 1 | 6 |
Module196 | 16 | 16 | GO:0006529 | biological_process | asparagine biosynthetic process | 0.002224528 | 1 | 6 |
Module196 | 16 | 17 | GO:0004066 | molecular_function | asparagine synthase (glutamine-hydrolyzing) activity | 0.002922995 | 1 | 6 |
Module196 | 16 | 18 | GO:0010262 | biological_process | somatic embryogenesis | 0.002965157 | 1 | 8 |
Module196 | 16 | 19 | GO:0019217 | biological_process | regulation of fatty acid metabolic process | 0.003335307 | 1 | 9 |
Module196 | 16 | 20 | GO:0046890 | biological_process | regulation of lipid biosynthetic process | 0.004445096 | 1 | 12 |
Module196 | 16 | 21 | GO:0010582 | biological_process | floral meristem determinacy | 0.005184406 | 1 | 14 |
Module196 | 16 | 22 | GO:0030522 | biological_process | intracellular receptor signaling pathway | 0.005184406 | 1 | 14 |
Module196 | 16 | 23 | GO:0009785 | biological_process | blue light signaling pathway | 0.005184406 | 1 | 14 |
Module196 | 16 | 24 | GO:0010077 | biological_process | maintenance of inflorescence meristem identity | 0.005184406 | 1 | 14 |
Module196 | 16 | 25 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.005237946 | 4 | 2526 |
Module196 | 16 | 26 | GO:0009750 | biological_process | response to fructose | 0.005553896 | 1 | 15 |
Module196 | 16 | 27 | GO:0010022 | biological_process | meristem determinacy | 0.005553896 | 1 | 15 |
Module196 | 16 | 28 | GO:0071483 | biological_process | cellular response to blue light | 0.006661708 | 1 | 18 |
Module196 | 16 | 29 | GO:0019216 | biological_process | regulation of lipid metabolic process | 0.006661708 | 1 | 18 |
Module196 | 16 | 30 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.007597064 | 3 | 1293 |
Module196 | 16 | 31 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.007597064 | 3 | 1293 |
Module196 | 16 | 32 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.007597064 | 3 | 1293 |
Module196 | 16 | 33 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.007782542 | 3 | 1304 |
Module196 | 16 | 34 | GO:0003676 | molecular_function | nucleic acid binding | 0.008279991 | 5 | 3117 |
Module196 | 16 | 35 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.008285075 | 3 | 1333 |
Module196 | 16 | 36 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module196 | 16 | 37 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module196 | 16 | 38 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.009658061 | 3 | 1407 |
Module196 | 16 | 39 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.009697006 | 3 | 1409 |
Module196 | 16 | 40 | GO:0010468 | biological_process | regulation of gene expression | 0.009794798 | 3 | 1414 |
Module196 | 16 | 41 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.009794798 | 3 | 1414 |
Module196 | 16 | 42 | GO:0006351 | biological_process | transcription, DNA-templated | 0.009794798 | 3 | 1414 |
Module196 | 16 | 43 | GO:0032774 | biological_process | RNA biosynthetic process | 0.009893202 | 3 | 1419 |
Module196 | 16 | 44 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.00995254 | 3 | 1422 |
Module196 | 16 | 45 | GO:0016884 | molecular_function | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | 0.0101978 | 1 | 21 |
Module196 | 16 | 46 | GO:0016053 | biological_process | organic acid biosynthetic process | 0.010494736 | 2 | 452 |
Module196 | 16 | 47 | GO:0046394 | biological_process | carboxylic acid biosynthetic process | 0.010494736 | 2 | 452 |
Module196 | 16 | 48 | GO:0009749 | biological_process | response to glucose | 0.011818452 | 1 | 32 |
Module196 | 16 | 49 | GO:0010074 | biological_process | maintenance of meristem identity | 0.011818452 | 1 | 32 |
Module196 | 16 | 50 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.012170854 | 3 | 1527 |
Module196 | 16 | 51 | GO:0010565 | biological_process | regulation of cellular ketone metabolic process | 0.01218597 | 1 | 33 |
Module196 | 16 | 52 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.012283456 | 3 | 1532 |
Module196 | 16 | 53 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.012786563 | 3 | 1554 |
Module196 | 16 | 54 | GO:0019827 | biological_process | stem cell population maintenance | 0.013287867 | 1 | 36 |
Module196 | 16 | 55 | GO:0009746 | biological_process | response to hexose | 0.013287867 | 1 | 36 |
Module196 | 16 | 56 | GO:0098727 | biological_process | maintenance of cell number | 0.013287867 | 1 | 36 |
Module196 | 16 | 57 | GO:0034284 | biological_process | response to monosaccharide | 0.013654947 | 1 | 37 |
Module196 | 16 | 58 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.013854847 | 3 | 1599 |
Module196 | 16 | 59 | GO:0009067 | biological_process | aspartate family amino acid biosynthetic process | 0.015855136 | 1 | 43 |
Module196 | 16 | 60 | GO:0044283 | biological_process | small molecule biosynthetic process | 0.016018068 | 2 | 563 |
Module196 | 16 | 61 | GO:0034285 | biological_process | response to disaccharide | 0.017685626 | 1 | 48 |
Module196 | 16 | 62 | GO:0009744 | biological_process | response to sucrose | 0.017685626 | 1 | 48 |
Module196 | 16 | 63 | GO:0019222 | biological_process | regulation of metabolic process | 0.01814826 | 3 | 1761 |
Module196 | 16 | 64 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.018885389 | 4 | 3545 |
Module196 | 16 | 65 | GO:0044249 | biological_process | cellular biosynthetic process | 0.018905295 | 4 | 3546 |
Module196 | 16 | 66 | GO:0061458 | biological_process | reproductive system development | 0.019380269 | 2 | 622 |
Module196 | 16 | 67 | GO:0048608 | biological_process | reproductive structure development | 0.019380269 | 2 | 622 |
Module196 | 16 | 68 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.019408642 | 3 | 1804 |
Module196 | 16 | 69 | GO:0042180 | biological_process | cellular ketone metabolic process | 0.019513391 | 1 | 53 |
Module196 | 16 | 70 | GO:0071482 | biological_process | cellular response to light stimulus | 0.019513391 | 1 | 53 |
Module196 | 16 | 71 | GO:0071478 | biological_process | cellular response to radiation | 0.019513391 | 1 | 53 |
Module196 | 16 | 72 | GO:0009066 | biological_process | aspartate family amino acid metabolic process | 0.019513391 | 1 | 53 |
Module196 | 16 | 73 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.019799872 | 3 | 1817 |
Module196 | 16 | 74 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.02012703 | 4 | 3606 |
Module196 | 16 | 75 | GO:0009637 | biological_process | response to blue light | 0.020608744 | 1 | 56 |
Module196 | 16 | 76 | GO:0016070 | biological_process | RNA metabolic process | 0.020939466 | 3 | 1854 |
Module196 | 16 | 77 | GO:0051254 | biological_process | positive regulation of RNA metabolic process | 0.022067691 | 1 | 60 |
Module196 | 16 | 78 | GO:0045893 | biological_process | positive regulation of transcription, DNA-templated | 0.022067691 | 1 | 60 |
Module196 | 16 | 79 | GO:1903508 | biological_process | positive regulation of nucleic acid-templated transcription | 0.022067691 | 1 | 60 |
Module196 | 16 | 80 | GO:1902680 | biological_process | positive regulation of RNA biosynthetic process | 0.022067691 | 1 | 60 |
Module196 | 16 | 81 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.023202162 | 3 | 1924 |
Module196 | 16 | 82 | GO:0009058 | biological_process | biosynthetic process | 0.023516678 | 4 | 3760 |
Module196 | 16 | 83 | GO:0004650 | molecular_function | polygalacturonase activity | 0.023653259 | 1 | 49 |
Module196 | 16 | 84 | GO:0045935 | biological_process | positive regulation of nucleobase-containing compound metabolic process | 0.02425285 | 1 | 66 |
Module196 | 16 | 85 | GO:0010073 | biological_process | meristem maintenance | 0.02425285 | 1 | 66 |
Module196 | 16 | 86 | GO:0010628 | biological_process | positive regulation of gene expression | 0.026434103 | 1 | 72 |
Module196 | 16 | 87 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.026599246 | 4 | 3887 |
Module196 | 16 | 88 | GO:0010557 | biological_process | positive regulation of macromolecule biosynthetic process | 0.027160319 | 1 | 74 |
Module196 | 16 | 89 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.027641247 | 2 | 750 |
Module196 | 16 | 90 | GO:0031328 | biological_process | positive regulation of cellular biosynthetic process | 0.027886102 | 1 | 76 |
Module196 | 16 | 91 | GO:0051173 | biological_process | positive regulation of nitrogen compound metabolic process | 0.028611452 | 1 | 78 |
Module196 | 16 | 92 | GO:0009891 | biological_process | positive regulation of biosynthetic process | 0.028611452 | 1 | 78 |
Module196 | 16 | 93 | GO:0044702 | biological_process | single organism reproductive process | 0.029332137 | 2 | 774 |
Module196 | 16 | 94 | GO:0009267 | biological_process | cellular response to starvation | 0.029336369 | 1 | 80 |
Module196 | 16 | 95 | GO:0009743 | biological_process | response to carbohydrate | 0.029698665 | 1 | 81 |
Module196 | 16 | 96 | GO:0042594 | biological_process | response to starvation | 0.031508523 | 1 | 86 |
Module196 | 16 | 97 | GO:0009791 | biological_process | post-embryonic development | 0.032097979 | 2 | 812 |
Module196 | 16 | 98 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.032903279 | 3 | 2185 |
Module196 | 16 | 99 | GO:0071214 | biological_process | cellular response to abiotic stimulus | 0.032954464 | 1 | 90 |
Module196 | 16 | 100 | GO:0031669 | biological_process | cellular response to nutrient levels | 0.033315679 | 1 | 91 |
Module196 | 16 | 101 | GO:0010604 | biological_process | positive regulation of macromolecule metabolic process | 0.035120137 | 1 | 96 |
Module196 | 16 | 102 | GO:0007154 | biological_process | cell communication | 0.035977249 | 2 | 863 |
Module196 | 16 | 103 | GO:0031667 | biological_process | response to nutrient levels | 0.03764185 | 1 | 103 |
Module196 | 16 | 104 | GO:0031325 | biological_process | positive regulation of cellular metabolic process | 0.03836137 | 1 | 105 |
Module196 | 16 | 105 | GO:0022414 | biological_process | reproductive process | 0.040288155 | 2 | 917 |
Module196 | 16 | 106 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.040369922 | 2 | 918 |
Module196 | 16 | 107 | GO:0000003 | biological_process | reproduction | 0.040697682 | 2 | 922 |
Module196 | 16 | 108 | GO:0050794 | biological_process | regulation of cellular process | 0.041541049 | 3 | 2381 |
Module196 | 16 | 109 | GO:0043436 | biological_process | oxoacid metabolic process | 0.041687623 | 2 | 934 |
Module196 | 16 | 110 | GO:0006082 | biological_process | organic acid metabolic process | 0.04185358 | 2 | 936 |
Module196 | 16 | 111 | GO:0048731 | biological_process | system development | 0.042939009 | 2 | 949 |
Module196 | 16 | 112 | GO:0031668 | biological_process | cellular response to extracellular stimulus | 0.043027767 | 1 | 118 |
Module196 | 16 | 113 | GO:0071496 | biological_process | cellular response to external stimulus | 0.043385969 | 1 | 119 |
Module196 | 16 | 114 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.04589695 | 6 | 6456 |
Module196 | 16 | 115 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.046074945 | 6 | 6461 |
Module196 | 16 | 116 | GO:0009991 | biological_process | response to extracellular stimulus | 0.047676032 | 1 | 131 |
Module196 | 16 | 117 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.047722657 | 3 | 2507 |
Module196 | 16 | 118 | GO:0010467 | biological_process | gene expression | 0.047978218 | 3 | 2512 |
Module196 | 16 | 119 | GO:0044238 | biological_process | primary metabolic process | 0.048729422 | 5 | 7365 |
Module196 | 16 | 120 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.048801293 | 3 | 2528 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC233959.1_FG003 | GRMZM2G104516 | 0.0506 |
AC233959.1_FG003 | wab1 | 0.0526 |
AC233959.1_FG003 | cadtfr7 | 0.0632 |
AC233959.1_FG003 | GRMZM2G487036 | 0.0354 |
lec1 | GRMZM2G045082 | 0.0354 |
lec1 | cadtfr7 | 0.1243 |
lec1 | GRMZM2G127342 | 0.0921 |
GRMZM2G045082 | cadtfr7 | 0.0527 |
GRMZM2G079617 | GRMZM2G366873 | 0.0481 |
asn2 | GRMZM2G127342 | 0.0644 |
GRMZM2G104516 | wab1 | 0.0477 |
GRMZM2G104516 | cadtfr7 | 0.0654 |
GRMZM2G104516 | GRMZM5G837123 | 0.0404 |
wab1 | cadtfr7 | 0.0565 |
wab1 | GRMZM2G366873 | 0.0387 |
cadtfr7 | GRMZM2G127342 | 0.0368 |
cadtfr7 | GRMZM2G154048 | 0.0515 |
cadtfr7 | GRMZM2G366873 | 0.0458 |
cadtfr7 | GRMZM2G454022 | 0.0403 |
cadtfr7 | GRMZM5G837123 | 0.0425 |
sbp21 | GRMZM2G454022 | 0.0434 |
sbp21 | GRMZM2G487036 | 0.038 |
GRMZM2G154048 | GRMZM2G454022 | 0.0486 |
zfl2 | GRMZM2G454022 | 0.0432 |
GRMZM2G454022 | GRMZM2G487036 | 0.056 |