This page contains information for Module197, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G000959 | Module197 | AT3G23770 | AT3G23770 | O-Glycosyl hydrolases family 17 protein | |||
GRMZM2G049109 | Module197 | AT3G51990 | AT3G51990 | Protein kinase superfamily protein | |||
GRMZM2G100475 | Module197 | AT5G45470 | AT5G45470 | Protein of unknown function (DUF594) | |||
GRMZM2G130302 | Module197 | AT5G04550 | AT5G04550 | Protein of unknown function (DUF668) | |||
GRMZM2G134260 | hb77 | Module197 | AT2G44910 | HB4 | homeobox-leucine zipper protein 4 | homeobox-leucine zipper protein 4 | HB |
GRMZM2G134545 | dof14 | Module197 | AT2G28810 | AT2G28810 | Dof-type zinc finger DNA-binding family protein | C2C2-Dof | |
GRMZM2G160175 | Module197 | AT1G25270 | UMAMIT24 | Usually multiple acids move in and out Transporters 24 | nodulin MtN21 /EamA-like transporter family protein | ||
GRMZM2G168214 | Module197 | AT3G30340 | UMAMIT32 | Usually multiple acids move in and out Transporters 32 | nodulin MtN21 /EamA-like transporter family protein | ||
GRMZM2G323456 | Module197 | ||||||
GRMZM2G361611 | bzip84 | Module197 | AT4G34590 | GBF6 | G-box binding factor 6 | G-box binding factor 6 | bZIP |
GRMZM2G387935 | Module197 | AT3G51070 | AT3G51070 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | |||
GRMZM2G444748 | bzip160 | Module197 | AT1G75390 | bZIP44 | basic leucine-zipper 44 | basic leucine-zipper 44 | bZIP |
GRMZM2G064655 | dof34 | Module197 | AT5G02460 | AT5G02460 | Dof-type zinc finger DNA-binding family protein | C2C2-Dof | |
GRMZM2G444743 | Module197 | ||||||
GRMZM2G465595 | c2h25 | Module197 | AT1G68130 | IDD14 | indeterminate(ID)-domain 14 | indeterminate(ID)-domain 14 | C2H2 |
GRMZM2G574887 | Module197 | AT3G06190 | BPM2 | BTB-POZ and MATH domain 2 | BTB-POZ and MATH domain 2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module197 | 16 | 1 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.000352719 | 5 | 1293 |
Module197 | 16 | 2 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.000352719 | 5 | 1293 |
Module197 | 16 | 3 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.000352719 | 5 | 1293 |
Module197 | 16 | 4 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.000367193 | 5 | 1304 |
Module197 | 16 | 5 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.000407568 | 5 | 1333 |
Module197 | 16 | 6 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.00047043 | 5 | 1374 |
Module197 | 16 | 7 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.00047043 | 5 | 1374 |
Module197 | 16 | 8 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.000526277 | 5 | 1407 |
Module197 | 16 | 9 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.000529819 | 5 | 1409 |
Module197 | 16 | 10 | GO:0010468 | biological_process | regulation of gene expression | 0.000538756 | 5 | 1414 |
Module197 | 16 | 11 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.000538756 | 5 | 1414 |
Module197 | 16 | 12 | GO:0006351 | biological_process | transcription, DNA-templated | 0.000538756 | 5 | 1414 |
Module197 | 16 | 13 | GO:0032774 | biological_process | RNA biosynthetic process | 0.000547808 | 5 | 1419 |
Module197 | 16 | 14 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.000553296 | 5 | 1422 |
Module197 | 16 | 15 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.000773775 | 5 | 1527 |
Module197 | 16 | 16 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.000785743 | 5 | 1532 |
Module197 | 16 | 17 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.000840109 | 5 | 1554 |
Module197 | 16 | 18 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.00096031 | 5 | 1599 |
Module197 | 16 | 19 | GO:0019222 | biological_process | regulation of metabolic process | 0.001505766 | 5 | 1761 |
Module197 | 16 | 20 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.001683989 | 5 | 1804 |
Module197 | 16 | 21 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.001740919 | 5 | 1817 |
Module197 | 16 | 22 | GO:0016070 | biological_process | RNA metabolic process | 0.00191102 | 5 | 1854 |
Module197 | 16 | 23 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.002267231 | 5 | 1924 |
Module197 | 16 | 24 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.002269407 | 3 | 460 |
Module197 | 16 | 25 | GO:0003677 | molecular_function | DNA binding | 0.003095304 | 5 | 1891 |
Module197 | 16 | 26 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.004056364 | 5 | 2185 |
Module197 | 16 | 27 | GO:0050794 | biological_process | regulation of cellular process | 0.00597935 | 5 | 2381 |
Module197 | 16 | 28 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.006923879 | 3 | 683 |
Module197 | 16 | 29 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.006952114 | 3 | 684 |
Module197 | 16 | 30 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.007531906 | 5 | 2507 |
Module197 | 16 | 31 | GO:0010467 | biological_process | gene expression | 0.007599131 | 5 | 2512 |
Module197 | 16 | 32 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.007789736 | 5 | 2526 |
Module197 | 16 | 33 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.007817252 | 5 | 2528 |
Module197 | 16 | 34 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.008811562 | 5 | 2597 |
Module197 | 16 | 35 | GO:0050789 | biological_process | regulation of biological process | 0.011365185 | 5 | 2751 |
Module197 | 16 | 36 | GO:0000976 | molecular_function | transcription regulatory region sequence-specific DNA binding | 0.012128783 | 1 | 20 |
Module197 | 16 | 37 | GO:0046483 | biological_process | heterocycle metabolic process | 0.013599377 | 5 | 2866 |
Module197 | 16 | 38 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.01451195 | 5 | 2909 |
Module197 | 16 | 39 | GO:1990837 | molecular_function | sequence-specific double-stranded DNA binding | 0.014538591 | 1 | 24 |
Module197 | 16 | 40 | GO:0065007 | biological_process | biological regulation | 0.014884769 | 5 | 2926 |
Module197 | 16 | 41 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.016565408 | 5 | 2999 |
Module197 | 16 | 42 | GO:0044212 | molecular_function | transcription regulatory region DNA binding | 0.016943107 | 1 | 28 |
Module197 | 16 | 43 | GO:0001067 | molecular_function | regulatory region nucleic acid binding | 0.017543411 | 1 | 29 |
Module197 | 16 | 44 | GO:0000975 | molecular_function | regulatory region DNA binding | 0.017543411 | 1 | 29 |
Module197 | 16 | 45 | GO:0003676 | molecular_function | nucleic acid binding | 0.026600863 | 5 | 3117 |
Module197 | 16 | 46 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.032754844 | 6 | 4961 |
Module197 | 16 | 47 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.033766195 | 5 | 3545 |
Module197 | 16 | 48 | GO:0044249 | biological_process | cellular biosynthetic process | 0.033806008 | 5 | 3546 |
Module197 | 16 | 49 | GO:0003690 | molecular_function | double-stranded DNA binding | 0.035989965 | 1 | 60 |
Module197 | 16 | 50 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.036255471 | 5 | 3606 |
Module197 | 16 | 51 | GO:0009058 | biological_process | biosynthetic process | 0.043104441 | 5 | 3760 |
Module197 | 16 | 52 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.049386432 | 5 | 3887 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G000959 | GRMZM2G387935 | 0.0423 |
GRMZM2G049109 | GRMZM2G323456 | 0.0402 |
GRMZM2G049109 | c2h25 | 0.0486 |
GRMZM2G100475 | c2h25 | 0.0398 |
GRMZM2G130302 | c2h25 | 0.0352 |
hb77 | dof14 | 0.0371 |
dof14 | bzip160 | 0.0389 |
GRMZM2G160175 | bzip84 | 0.0419 |
GRMZM2G168214 | bzip84 | 0.0474 |
bzip84 | bzip160 | 0.1138 |
GRMZM2G387935 | c2h25 | 0.0462 |
bzip160 | dof34 | 0.0369 |
bzip160 | GRMZM2G444743 | 0.0828 |
bzip160 | GRMZM2G574887 | 0.0458 |
dof34 | c2h25 | 0.0375 |