This page contains information for Module201, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G018416 | Module201 | AT4G26690 | SHV3 | SHAVEN 3 | PLC-like phosphodiesterase family protein | ||
GRMZM2G013324 | Module201 | AT4G26690 | SHV3 | SHAVEN 3 | PLC-like phosphodiesterase family protein | ||
GRMZM2G061419 | Module201 | AT2G19880 | AT2G19880 | Nucleotide-diphospho-sugar transferases superfamily protein | |||
GRMZM2G038964 | pza00978 | Module201 | AT2G34770 | FAH1 | fatty acid hydroxylase 1 | fatty acid hydroxylase 1 | |
GRMZM2G082484 | Module201 | AT5G09810 | ACT7 | actin 7 | actin 7 | ||
GRMZM2G030169 | Module201 | AT5G09810 | ACT7 | actin 7 | actin 7 | ||
GRMZM2G044527 | Module201 | AT5G08080 | SYP132 | syntaxin of plants 132 | syntaxin of plants 132 | ||
GRMZM2G100641 | Module201 | AT4G24630 | AT4G24630 | DHHC-type zinc finger family protein | |||
GRMZM2G111642 | cesa5 | Module201 | AT5G05170 | CEV1 | CONSTITUTIVE EXPRESSION OF VSP 1 | Cellulose synthase family protein | |
GRMZM2G113137 | cesa6 | Module201 | AT5G64740 | CESA6 | cellulose synthase 6 | cellulose synthase 6 | |
GRMZM2G170201 | Module201 | AT1G27220 | AT1G27220 | paired amphipathic helix repeat-containing protein | Orphans | ||
GRMZM2G330772 | Module201 | AT5G08080 | SYP132 | syntaxin of plants 132 | syntaxin of plants 132 | ||
GRMZM2G460396 | Module201 | AT2G31900 | XIF | myosin-like protein XIF | myosin-like protein XIF | ||
GRMZM2G177259 | Module201 | AT1G18990 | AT1G18990 | Protein of unknown function, DUF593 | |||
GRMZM2G484706 | Module201 | AT2G35980 | YLS9 | YELLOW-LEAF-SPECIFIC GENE 9 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | ||
GRMZM5G862467 | Module201 | AT5G45550 | MOB1-like | MOB1-like | Mob1/phocein family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module201 | 16 | 1 | GO:0030243 | biological_process | cellulose metabolic process | 2.13E-08 | 4 | 58 |
Module201 | 16 | 2 | GO:0051273 | biological_process | beta-glucan metabolic process | 5.46E-08 | 4 | 73 |
Module201 | 16 | 3 | GO:0071669 | biological_process | plant-type cell wall organization or biogenesis | 2.87E-07 | 4 | 110 |
Module201 | 16 | 4 | GO:0010441 | biological_process | guard cell development | 3.08E-07 | 2 | 2 |
Module201 | 16 | 5 | GO:0010442 | biological_process | guard cell morphogenesis | 3.08E-07 | 2 | 2 |
Module201 | 16 | 6 | GO:0052541 | biological_process | plant-type cell wall cellulose metabolic process | 3.08E-07 | 2 | 2 |
Module201 | 16 | 7 | GO:0006073 | biological_process | cellular glucan metabolic process | 1.81E-06 | 4 | 174 |
Module201 | 16 | 8 | GO:0044042 | biological_process | glucan metabolic process | 1.81E-06 | 4 | 174 |
Module201 | 16 | 9 | GO:0010052 | biological_process | guard cell differentiation | 1.85E-06 | 2 | 4 |
Module201 | 16 | 10 | GO:0044264 | biological_process | cellular polysaccharide metabolic process | 3.15E-06 | 4 | 200 |
Module201 | 16 | 11 | GO:0009833 | biological_process | plant-type primary cell wall biogenesis | 4.62E-06 | 2 | 6 |
Module201 | 16 | 12 | GO:0005976 | biological_process | polysaccharide metabolic process | 6.18E-06 | 4 | 237 |
Module201 | 16 | 13 | GO:0071554 | biological_process | cell wall organization or biogenesis | 7.40E-06 | 4 | 248 |
Module201 | 16 | 14 | GO:0044262 | biological_process | cellular carbohydrate metabolic process | 2.00E-05 | 4 | 319 |
Module201 | 16 | 15 | GO:0010103 | biological_process | stomatal complex morphogenesis | 2.80E-05 | 2 | 14 |
Module201 | 16 | 16 | GO:0008889 | molecular_function | glycerophosphodiester phosphodiesterase activity | 5.12E-05 | 2 | 15 |
Module201 | 16 | 17 | GO:0006071 | biological_process | glycerol metabolic process | 5.83E-05 | 2 | 20 |
Module201 | 16 | 18 | GO:0019400 | biological_process | alditol metabolic process | 6.44E-05 | 2 | 21 |
Module201 | 16 | 19 | GO:0005484 | molecular_function | SNAP receptor activity | 8.33E-05 | 2 | 19 |
Module201 | 16 | 20 | GO:0044723 | biological_process | single-organism carbohydrate metabolic process | 0.000131538 | 4 | 516 |
Module201 | 16 | 21 | GO:0010374 | biological_process | stomatal complex development | 0.000133038 | 2 | 30 |
Module201 | 16 | 22 | GO:0016760 | molecular_function | cellulose synthase (UDP-forming) activity | 0.000225442 | 2 | 31 |
Module201 | 16 | 23 | GO:0016759 | molecular_function | cellulose synthase activity | 0.000225442 | 2 | 31 |
Module201 | 16 | 24 | GO:0000281 | biological_process | mitotic cytokinesis | 0.000262387 | 2 | 42 |
Module201 | 16 | 25 | GO:0061640 | biological_process | cytoskeleton-dependent cytokinesis | 0.000288119 | 2 | 44 |
Module201 | 16 | 26 | GO:0019751 | biological_process | polyol metabolic process | 0.000343142 | 2 | 48 |
Module201 | 16 | 27 | GO:0010383 | biological_process | cell wall polysaccharide metabolic process | 0.000343142 | 2 | 48 |
Module201 | 16 | 28 | GO:0016049 | biological_process | cell growth | 0.000365884 | 3 | 259 |
Module201 | 16 | 29 | GO:0009664 | biological_process | plant-type cell wall organization | 0.00041857 | 2 | 53 |
Module201 | 16 | 30 | GO:0030244 | biological_process | cellulose biosynthetic process | 0.00043454 | 2 | 54 |
Module201 | 16 | 31 | GO:0010026 | biological_process | trichome differentiation | 0.000484212 | 2 | 57 |
Module201 | 16 | 32 | GO:0090626 | biological_process | plant epidermis morphogenesis | 0.00057286 | 2 | 62 |
Module201 | 16 | 33 | GO:0008081 | molecular_function | phosphoric diester hydrolase activity | 0.000637408 | 2 | 52 |
Module201 | 16 | 34 | GO:0048764 | biological_process | trichoblast maturation | 0.000668806 | 2 | 67 |
Module201 | 16 | 35 | GO:0048765 | biological_process | root hair cell differentiation | 0.000668806 | 2 | 67 |
Module201 | 16 | 36 | GO:0048469 | biological_process | cell maturation | 0.000688869 | 2 | 68 |
Module201 | 16 | 37 | GO:0051274 | biological_process | beta-glucan biosynthetic process | 0.000709221 | 2 | 69 |
Module201 | 16 | 38 | GO:0009832 | biological_process | plant-type cell wall biogenesis | 0.000709221 | 2 | 69 |
Module201 | 16 | 39 | GO:0010054 | biological_process | trichoblast differentiation | 0.000709221 | 2 | 69 |
Module201 | 16 | 40 | GO:0000910 | biological_process | cytokinesis | 0.000709221 | 2 | 69 |
Module201 | 16 | 41 | GO:0040007 | biological_process | growth | 0.000750275 | 3 | 331 |
Module201 | 16 | 42 | GO:1903047 | biological_process | mitotic cell cycle process | 0.000905413 | 2 | 78 |
Module201 | 16 | 43 | GO:0010053 | biological_process | root epidermal cell differentiation | 0.001000101 | 2 | 82 |
Module201 | 16 | 44 | GO:0000278 | biological_process | mitotic cell cycle | 0.00102449 | 2 | 83 |
Module201 | 16 | 45 | GO:0090627 | biological_process | plant epidermal cell differentiation | 0.001049166 | 2 | 84 |
Module201 | 16 | 46 | GO:0042546 | biological_process | cell wall biogenesis | 0.001150726 | 2 | 88 |
Module201 | 16 | 47 | GO:0044036 | biological_process | cell wall macromolecule metabolic process | 0.001150726 | 2 | 88 |
Module201 | 16 | 48 | GO:0009886 | biological_process | post-embryonic morphogenesis | 0.001339422 | 2 | 95 |
Module201 | 16 | 49 | GO:0005975 | biological_process | carbohydrate metabolic process | 0.001386805 | 4 | 954 |
Module201 | 16 | 50 | GO:0021700 | biological_process | developmental maturation | 0.001453485 | 2 | 99 |
Module201 | 16 | 51 | GO:0009250 | biological_process | glucan biosynthetic process | 0.001512211 | 2 | 101 |
Module201 | 16 | 52 | GO:0009932 | biological_process | cell tip growth | 0.001541996 | 2 | 102 |
Module201 | 16 | 53 | GO:0031225 | cellular_component | anchored component of membrane | 0.001581671 | 2 | 53 |
Module201 | 16 | 54 | GO:0046658 | cellular_component | anchored component of plasma membrane | 0.001581671 | 2 | 53 |
Module201 | 16 | 55 | GO:0035251 | molecular_function | UDP-glucosyltransferase activity | 0.001732849 | 2 | 86 |
Module201 | 16 | 56 | GO:0010016 | biological_process | shoot system morphogenesis | 0.001921298 | 2 | 114 |
Module201 | 16 | 57 | GO:0071555 | biological_process | cell wall organization | 0.001954722 | 2 | 115 |
Module201 | 16 | 58 | GO:0046527 | molecular_function | glucosyltransferase activity | 0.002242454 | 2 | 98 |
Module201 | 16 | 59 | GO:0006066 | biological_process | alcohol metabolic process | 0.002268016 | 2 | 124 |
Module201 | 16 | 60 | GO:0033692 | biological_process | cellular polysaccharide biosynthetic process | 0.002451731 | 2 | 129 |
Module201 | 16 | 61 | GO:0031226 | cellular_component | intrinsic component of plasma membrane | 0.002515443 | 2 | 67 |
Module201 | 16 | 62 | GO:0005856 | cellular_component | cytoskeleton | 0.002580626 | 3 | 254 |
Module201 | 16 | 63 | GO:0000271 | biological_process | polysaccharide biosynthetic process | 0.002603644 | 2 | 133 |
Module201 | 16 | 64 | GO:0045229 | biological_process | external encapsulating structure organization | 0.002799687 | 2 | 138 |
Module201 | 16 | 65 | GO:0000904 | biological_process | cell morphogenesis involved in differentiation | 0.002961421 | 2 | 142 |
Module201 | 16 | 66 | GO:0010015 | biological_process | root morphogenesis | 0.003043916 | 2 | 144 |
Module201 | 16 | 67 | GO:0090558 | biological_process | plant epidermis development | 0.003651579 | 2 | 158 |
Module201 | 16 | 68 | GO:1901615 | biological_process | organic hydroxy compound metabolic process | 0.004117718 | 2 | 168 |
Module201 | 16 | 69 | GO:0051301 | biological_process | cell division | 0.004311595 | 2 | 172 |
Module201 | 16 | 70 | GO:0009826 | biological_process | unidimensional cell growth | 0.004410117 | 2 | 174 |
Module201 | 16 | 71 | GO:0034637 | biological_process | cellular carbohydrate biosynthetic process | 0.004459773 | 2 | 175 |
Module201 | 16 | 72 | GO:0022402 | biological_process | cell cycle process | 0.004814707 | 2 | 182 |
Module201 | 16 | 73 | GO:0048468 | biological_process | cell development | 0.005452886 | 2 | 194 |
Module201 | 16 | 74 | GO:0060560 | biological_process | developmental growth involved in morphogenesis | 0.005842351 | 2 | 201 |
Module201 | 16 | 75 | GO:0071840 | biological_process | cellular component organization or biogenesis | 0.006299422 | 4 | 1435 |
Module201 | 16 | 76 | GO:0043069 | biological_process | negative regulation of programmed cell death | 0.006513189 | 1 | 11 |
Module201 | 16 | 77 | GO:0008194 | molecular_function | UDP-glycosyltransferase activity | 0.007272926 | 2 | 179 |
Module201 | 16 | 78 | GO:0016051 | biological_process | carbohydrate biosynthetic process | 0.007335279 | 2 | 226 |
Module201 | 16 | 79 | GO:0016757 | molecular_function | transferase activity, transferring glycosyl groups | 0.007511045 | 3 | 577 |
Module201 | 16 | 80 | GO:0000902 | biological_process | cell morphogenesis | 0.007652761 | 2 | 231 |
Module201 | 16 | 81 | GO:0043255 | biological_process | regulation of carbohydrate biosynthetic process | 0.008283058 | 1 | 14 |
Module201 | 16 | 82 | GO:0043622 | biological_process | cortical microtubule organization | 0.008283058 | 1 | 14 |
Module201 | 16 | 83 | GO:0031122 | biological_process | cytoplasmic microtubule organization | 0.008283058 | 1 | 14 |
Module201 | 16 | 84 | GO:0048589 | biological_process | developmental growth | 0.008778607 | 2 | 248 |
Module201 | 16 | 85 | GO:0060548 | biological_process | negative regulation of cell death | 0.008872401 | 1 | 15 |
Module201 | 16 | 86 | GO:0044459 | cellular_component | plasma membrane part | 0.009032163 | 2 | 129 |
Module201 | 16 | 87 | GO:0007049 | biological_process | cell cycle | 0.009053847 | 2 | 252 |
Module201 | 16 | 88 | GO:0032989 | biological_process | cellular component morphogenesis | 0.009123268 | 2 | 253 |
Module201 | 16 | 89 | GO:0030865 | biological_process | cortical cytoskeleton organization | 0.009461438 | 1 | 16 |
Module201 | 16 | 90 | GO:0000038 | biological_process | very long-chain fatty acid metabolic process | 0.010050168 | 1 | 17 |
Module201 | 16 | 91 | GO:0006629 | biological_process | lipid metabolic process | 0.010490642 | 3 | 835 |
Module201 | 16 | 92 | GO:0022622 | biological_process | root system development | 0.011013111 | 2 | 279 |
Module201 | 16 | 93 | GO:0048364 | biological_process | root development | 0.011013111 | 2 | 279 |
Module201 | 16 | 94 | GO:0016192 | biological_process | vesicle-mediated transport | 0.011318222 | 2 | 283 |
Module201 | 16 | 95 | GO:0006886 | biological_process | intracellular protein transport | 0.012576403 | 2 | 299 |
Module201 | 16 | 96 | GO:0030154 | biological_process | cell differentiation | 0.012737889 | 2 | 301 |
Module201 | 16 | 97 | GO:0006109 | biological_process | regulation of carbohydrate metabolic process | 0.012989229 | 1 | 22 |
Module201 | 16 | 98 | GO:0034613 | biological_process | cellular protein localization | 0.014318155 | 2 | 320 |
Module201 | 16 | 99 | GO:0070727 | biological_process | cellular macromolecule localization | 0.01589127 | 2 | 338 |
Module201 | 16 | 100 | GO:0009888 | biological_process | tissue development | 0.016250759 | 2 | 342 |
Module201 | 16 | 101 | GO:0043067 | biological_process | regulation of programmed cell death | 0.016506021 | 1 | 28 |
Module201 | 16 | 102 | GO:0016459 | cellular_component | myosin complex | 0.016932804 | 1 | 15 |
Module201 | 16 | 103 | GO:0009809 | biological_process | lignin biosynthetic process | 0.017091086 | 1 | 29 |
Module201 | 16 | 104 | GO:0042578 | molecular_function | phosphoric ester hydrolase activity | 0.01805071 | 2 | 288 |
Module201 | 16 | 105 | GO:0009506 | cellular_component | plasmodesma | 0.018752476 | 3 | 520 |
Module201 | 16 | 106 | GO:0055044 | cellular_component | symplast | 0.018752476 | 3 | 520 |
Module201 | 16 | 107 | GO:0005911 | cellular_component | cell-cell junction | 0.018752476 | 3 | 520 |
Module201 | 16 | 108 | GO:0030054 | cellular_component | cell junction | 0.018752476 | 3 | 520 |
Module201 | 16 | 109 | GO:0009834 | biological_process | plant-type secondary cell wall biogenesis | 0.018844454 | 1 | 32 |
Module201 | 16 | 110 | GO:0010941 | biological_process | regulation of cell death | 0.020011844 | 1 | 34 |
Module201 | 16 | 111 | GO:0046907 | biological_process | intracellular transport | 0.020939961 | 2 | 391 |
Module201 | 16 | 112 | GO:0048869 | biological_process | cellular developmental process | 0.022791919 | 2 | 409 |
Module201 | 16 | 113 | GO:0009505 | cellular_component | plant-type cell wall | 0.025095642 | 2 | 221 |
Module201 | 16 | 114 | GO:0015031 | biological_process | protein transport | 0.025146977 | 2 | 431 |
Module201 | 16 | 115 | GO:0045184 | biological_process | establishment of protein localization | 0.025585824 | 2 | 435 |
Module201 | 16 | 116 | GO:0009808 | biological_process | lignin metabolic process | 0.026410795 | 1 | 45 |
Module201 | 16 | 117 | GO:0008104 | biological_process | protein localization | 0.02771442 | 2 | 454 |
Module201 | 16 | 118 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.030844022 | 3 | 1244 |
Module201 | 16 | 119 | GO:0051649 | biological_process | establishment of localization in cell | 0.030862326 | 2 | 481 |
Module201 | 16 | 120 | GO:0048367 | biological_process | shoot system development | 0.031943107 | 2 | 490 |
Module201 | 16 | 121 | GO:0000226 | biological_process | microtubule cytoskeleton organization | 0.033349744 | 1 | 57 |
Module201 | 16 | 122 | GO:0009699 | biological_process | phenylpropanoid biosynthetic process | 0.033349744 | 1 | 57 |
Module201 | 16 | 123 | GO:0016043 | biological_process | cellular component organization | 0.034840667 | 3 | 1303 |
Module201 | 16 | 124 | GO:0099402 | biological_process | plant organ development | 0.035910271 | 2 | 522 |
Module201 | 16 | 125 | GO:0051641 | biological_process | cellular localization | 0.036675364 | 2 | 528 |
Module201 | 16 | 126 | GO:0009653 | biological_process | anatomical structure morphogenesis | 0.037576316 | 2 | 535 |
Module201 | 16 | 127 | GO:0033036 | biological_process | macromolecule localization | 0.038616891 | 2 | 543 |
Module201 | 16 | 128 | GO:0016758 | molecular_function | transferase activity, transferring hexosyl groups | 0.040487012 | 2 | 445 |
Module201 | 16 | 129 | GO:0012501 | biological_process | programmed cell death | 0.04196255 | 1 | 72 |
Module201 | 16 | 130 | GO:0044085 | biological_process | cellular component biogenesis | 0.042485016 | 2 | 572 |
Module201 | 16 | 131 | GO:0009698 | biological_process | phenylpropanoid metabolic process | 0.044818525 | 1 | 77 |
Module201 | 16 | 132 | GO:0044710 | biological_process | single-organism metabolic process | 0.045117142 | 5 | 3802 |
Module201 | 16 | 133 | GO:0044281 | biological_process | small molecule metabolic process | 0.048645981 | 3 | 1482 |
Module201 | 16 | 134 | GO:0044550 | biological_process | secondary metabolite biosynthetic process | 0.048804374 | 1 | 84 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G018416 | GRMZM2G013324 | 0.041 |
GRMZM2G013324 | GRMZM2G061419 | 0.0446 |
GRMZM2G013324 | GRMZM2G082484 | 0.0359 |
GRMZM2G013324 | cesa5 | 0.0355 |
GRMZM2G061419 | pza00978 | 0.0435 |
GRMZM2G061419 | GRMZM2G082484 | 0.0433 |
GRMZM2G082484 | GRMZM2G030169 | 0.0877 |
GRMZM2G082484 | GRMZM2G044527 | 0.0378 |
GRMZM2G082484 | GRMZM2G100641 | 0.042 |
GRMZM2G082484 | GRMZM2G460396 | 0.0476 |
GRMZM2G082484 | GRMZM2G484706 | 0.037 |
GRMZM2G082484 | GRMZM5G862467 | 0.0585 |
GRMZM2G030169 | GRMZM2G460396 | 0.0365 |
GRMZM2G044527 | GRMZM2G330772 | 0.0496 |
cesa5 | cesa6 | 0.0354 |
GRMZM2G170201 | GRMZM5G862467 | 0.035 |
GRMZM2G460396 | GRMZM2G177259 | 0.04 |