This page contains information for Module204, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G039683 | Module204 | AT4G35740 | RecQl3 | DEAD/DEAH box RNA helicase family protein | |||
GRMZM2G013625 | Module204 | AT1G10600 | AMSH2 | associated molecule with the SH3 domain of STAM 2 | associated molecule with the SH3 domain of STAM 2 | ||
GRMZM2G049021 | pco137163 | Module204 | AT3G16190 | AT3G16190 | Isochorismatase family protein | ||
GRMZM2G035421 | Module204 | AT5G04040 | SDP1 | SUGAR-DEPENDENT1 | Patatin-like phospholipase family protein | ||
GRMZM2G072584 | Module204 | AT5G01850 | AT5G01850 | Protein kinase superfamily protein | |||
GRMZM2G126858 | Module204 | AT1G56145 | AT1G56145 | Leucine-rich repeat transmembrane protein kinase | |||
GRMZM2G126239 | hb46 | Module204 | AT2G01430 | HB17 | homeobox-leucine zipper protein 17 | homeobox-leucine zipper protein 17 | HB |
GRMZM2G152370 | Module204 | AT4G25440 | ZFWD1 | zinc finger WD40 repeat protein 1 | zinc finger WD40 repeat protein 1 | C3H | |
GRMZM2G180251 | Module204 | ||||||
GRMZM2G305332 | Module204 | AT1G13180 | DIS1 | DISTORTED TRICHOMES 1 | Actin-like ATPase superfamily protein | ||
GRMZM2G019119 | ras11E2 | Module204 | AT5G47960 | RABA4C | RAB GTPase homolog A4C | RAB GTPase homolog A4C | |
GRMZM2G306216 | Module204 | ||||||
GRMZM2G340359 | Module204 | AT5G19390 | AT5G19390 | Rho GTPase activation protein (RhoGAP) with PH domain | |||
GRMZM2G457630 | Module204 | AT3G50430 | AT3G50430 | ||||
GRMZM2G057567 | Module204 | AT4G31350 | AT4G31350 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | |||
GRMZM5G803802 | Module204 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module204 | 16 | 1 | GO:0009378 | molecular_function | four-way junction helicase activity | 0.001462567 | 1 | 2 |
Module204 | 16 | 2 | GO:0051128 | biological_process | regulation of cellular component organization | 0.002128395 | 2 | 106 |
Module204 | 16 | 3 | GO:0046461 | biological_process | neutral lipid catabolic process | 0.002669038 | 1 | 4 |
Module204 | 16 | 4 | GO:0046464 | biological_process | acylglycerol catabolic process | 0.002669038 | 1 | 4 |
Module204 | 16 | 5 | GO:0019433 | biological_process | triglyceride catabolic process | 0.002669038 | 1 | 4 |
Module204 | 16 | 6 | GO:0046503 | biological_process | glycerolipid catabolic process | 0.002669038 | 1 | 4 |
Module204 | 16 | 7 | GO:0043138 | molecular_function | 3'-5' DNA helicase activity | 0.003652742 | 1 | 5 |
Module204 | 16 | 8 | GO:0000904 | biological_process | cell morphogenesis involved in differentiation | 0.003781296 | 2 | 142 |
Module204 | 16 | 9 | GO:0012511 | cellular_component | monolayer-surrounded lipid storage body | 0.005107338 | 1 | 9 |
Module204 | 16 | 10 | GO:0005811 | cellular_component | lipid particle | 0.005673476 | 1 | 10 |
Module204 | 16 | 11 | GO:0051286 | cellular_component | cell tip | 0.006804946 | 1 | 12 |
Module204 | 16 | 12 | GO:0035838 | cellular_component | growing cell tip | 0.006804946 | 1 | 12 |
Module204 | 16 | 13 | GO:0090404 | cellular_component | pollen tube tip | 0.006804946 | 1 | 12 |
Module204 | 16 | 14 | GO:0048468 | biological_process | cell development | 0.006944711 | 2 | 194 |
Module204 | 16 | 15 | GO:0044463 | cellular_component | cell projection part | 0.007370279 | 1 | 13 |
Module204 | 16 | 16 | GO:0005885 | cellular_component | Arp2/3 protein complex | 0.007370279 | 1 | 13 |
Module204 | 16 | 17 | GO:0030427 | cellular_component | site of polarized growth | 0.008500139 | 1 | 15 |
Module204 | 16 | 18 | GO:0045177 | cellular_component | apical part of cell | 0.008500139 | 1 | 15 |
Module204 | 16 | 19 | GO:0045010 | biological_process | actin nucleation | 0.008651233 | 1 | 13 |
Module204 | 16 | 20 | GO:0034314 | biological_process | Arp2/3 complex-mediated actin nucleation | 0.008651233 | 1 | 13 |
Module204 | 16 | 21 | GO:0010769 | biological_process | regulation of cell morphogenesis involved in differentiation | 0.008651233 | 1 | 13 |
Module204 | 16 | 22 | GO:0080092 | biological_process | regulation of pollen tube growth | 0.008651233 | 1 | 13 |
Module204 | 16 | 23 | GO:0030838 | biological_process | positive regulation of actin filament polymerization | 0.008651233 | 1 | 13 |
Module204 | 16 | 24 | GO:0060284 | biological_process | regulation of cell development | 0.009313949 | 1 | 14 |
Module204 | 16 | 25 | GO:0000902 | biological_process | cell morphogenesis | 0.009728708 | 2 | 231 |
Module204 | 16 | 26 | GO:0032273 | biological_process | positive regulation of protein polymerization | 0.009976271 | 1 | 15 |
Module204 | 16 | 27 | GO:0031334 | biological_process | positive regulation of protein complex assembly | 0.009976271 | 1 | 15 |
Module204 | 16 | 28 | GO:0051495 | biological_process | positive regulation of cytoskeleton organization | 0.010638199 | 1 | 16 |
Module204 | 16 | 29 | GO:0006641 | biological_process | triglyceride metabolic process | 0.011299733 | 1 | 17 |
Module204 | 16 | 30 | GO:0032989 | biological_process | cellular component morphogenesis | 0.011585577 | 2 | 253 |
Module204 | 16 | 31 | GO:0044089 | biological_process | positive regulation of cellular component biogenesis | 0.011960875 | 1 | 18 |
Module204 | 16 | 32 | GO:0006638 | biological_process | neutral lipid metabolic process | 0.011960875 | 1 | 18 |
Module204 | 16 | 33 | GO:0006639 | biological_process | acylglycerol metabolic process | 0.011960875 | 1 | 18 |
Module204 | 16 | 34 | GO:0016049 | biological_process | cell growth | 0.012117439 | 2 | 259 |
Module204 | 16 | 35 | GO:0043168 | molecular_function | anion binding | 0.012518096 | 6 | 2999 |
Module204 | 16 | 36 | GO:0051510 | biological_process | regulation of unidimensional cell growth | 0.013281979 | 1 | 20 |
Module204 | 16 | 37 | GO:0030133 | cellular_component | transport vesicle | 0.01413338 | 1 | 25 |
Module204 | 16 | 38 | GO:0090406 | cellular_component | pollen tube | 0.014695234 | 1 | 26 |
Module204 | 16 | 39 | GO:0042995 | cellular_component | cell projection | 0.015256821 | 1 | 27 |
Module204 | 16 | 40 | GO:0022604 | biological_process | regulation of cell morphogenesis | 0.015919477 | 1 | 24 |
Module204 | 16 | 41 | GO:0030832 | biological_process | regulation of actin filament length | 0.015919477 | 1 | 24 |
Module204 | 16 | 42 | GO:0030833 | biological_process | regulation of actin filament polymerization | 0.015919477 | 1 | 24 |
Module204 | 16 | 43 | GO:0008064 | biological_process | regulation of actin polymerization or depolymerization | 0.015919477 | 1 | 24 |
Module204 | 16 | 44 | GO:0032956 | biological_process | regulation of actin cytoskeleton organization | 0.015919477 | 1 | 24 |
Module204 | 16 | 45 | GO:0032970 | biological_process | regulation of actin filament-based process | 0.015919477 | 1 | 24 |
Module204 | 16 | 46 | GO:0030154 | biological_process | cell differentiation | 0.016137672 | 2 | 301 |
Module204 | 16 | 47 | GO:0030041 | biological_process | actin filament polymerization | 0.016577872 | 1 | 25 |
Module204 | 16 | 48 | GO:0043254 | biological_process | regulation of protein complex assembly | 0.017235875 | 1 | 26 |
Module204 | 16 | 49 | GO:0010638 | biological_process | positive regulation of organelle organization | 0.017235875 | 1 | 26 |
Module204 | 16 | 50 | GO:0032271 | biological_process | regulation of protein polymerization | 0.017235875 | 1 | 26 |
Module204 | 16 | 51 | GO:0009825 | biological_process | multidimensional cell growth | 0.018550707 | 1 | 28 |
Module204 | 16 | 52 | GO:0040007 | biological_process | growth | 0.019318178 | 2 | 331 |
Module204 | 16 | 53 | GO:0051493 | biological_process | regulation of cytoskeleton organization | 0.020520024 | 1 | 31 |
Module204 | 16 | 54 | GO:0051130 | biological_process | positive regulation of cellular component organization | 0.021175681 | 1 | 32 |
Module204 | 16 | 55 | GO:0045595 | biological_process | regulation of cell differentiation | 0.021830949 | 1 | 33 |
Module204 | 16 | 56 | GO:0003678 | molecular_function | DNA helicase activity | 0.02245062 | 1 | 31 |
Module204 | 16 | 57 | GO:0001558 | biological_process | regulation of cell growth | 0.023140315 | 1 | 35 |
Module204 | 16 | 58 | GO:0044087 | biological_process | regulation of cellular component biogenesis | 0.024448122 | 1 | 37 |
Module204 | 16 | 59 | GO:0035639 | molecular_function | purine ribonucleoside triphosphate binding | 0.024563584 | 5 | 2478 |
Module204 | 16 | 60 | GO:0008154 | biological_process | actin polymerization or depolymerization | 0.025101442 | 1 | 38 |
Module204 | 16 | 61 | GO:0015629 | cellular_component | actin cytoskeleton | 0.02643268 | 1 | 47 |
Module204 | 16 | 62 | GO:0032535 | biological_process | regulation of cellular component size | 0.027059069 | 1 | 41 |
Module204 | 16 | 63 | GO:0090066 | biological_process | regulation of anatomical structure size | 0.027059069 | 1 | 41 |
Module204 | 16 | 64 | GO:0032550 | molecular_function | purine ribonucleoside binding | 0.027295323 | 5 | 2544 |
Module204 | 16 | 65 | GO:0032555 | molecular_function | purine ribonucleotide binding | 0.027295323 | 5 | 2544 |
Module204 | 16 | 66 | GO:0001883 | molecular_function | purine nucleoside binding | 0.027295323 | 5 | 2544 |
Module204 | 16 | 67 | GO:0032549 | molecular_function | ribonucleoside binding | 0.027596654 | 5 | 2551 |
Module204 | 16 | 68 | GO:0017076 | molecular_function | purine nucleotide binding | 0.027639885 | 5 | 2552 |
Module204 | 16 | 69 | GO:0001882 | molecular_function | nucleoside binding | 0.027639885 | 5 | 2552 |
Module204 | 16 | 70 | GO:0044242 | biological_process | cellular lipid catabolic process | 0.028362212 | 1 | 43 |
Module204 | 16 | 71 | GO:0048869 | biological_process | cellular developmental process | 0.028722784 | 2 | 409 |
Module204 | 16 | 72 | GO:0032553 | molecular_function | ribonucleotide binding | 0.029002955 | 5 | 2583 |
Module204 | 16 | 73 | GO:0097367 | molecular_function | carbohydrate derivative binding | 0.030180693 | 5 | 2609 |
Module204 | 16 | 74 | GO:0043900 | biological_process | regulation of multi-organism process | 0.030963844 | 1 | 47 |
Module204 | 16 | 75 | GO:0048638 | biological_process | regulation of developmental growth | 0.030963844 | 1 | 47 |
Module204 | 16 | 76 | GO:0010090 | biological_process | trichome morphogenesis | 0.031613284 | 1 | 48 |
Module204 | 16 | 77 | GO:0022603 | biological_process | regulation of anatomical structure morphogenesis | 0.033559282 | 1 | 51 |
Module204 | 16 | 78 | GO:0007015 | biological_process | actin filament organization | 0.034207175 | 1 | 52 |
Module204 | 16 | 79 | GO:0010026 | biological_process | trichome differentiation | 0.037440854 | 1 | 57 |
Module204 | 16 | 80 | GO:0008375 | molecular_function | acetylglucosaminyltransferase activity | 0.038101985 | 1 | 53 |
Module204 | 16 | 81 | GO:0016042 | biological_process | lipid catabolic process | 0.040020863 | 1 | 61 |
Module204 | 16 | 82 | GO:0090626 | biological_process | plant epidermis morphogenesis | 0.040664905 | 1 | 62 |
Module204 | 16 | 83 | GO:0033043 | biological_process | regulation of organelle organization | 0.041308562 | 1 | 63 |
Module204 | 16 | 84 | GO:0006310 | biological_process | DNA recombination | 0.04323723 | 1 | 66 |
Module204 | 16 | 85 | GO:0040008 | biological_process | regulation of growth | 0.046444015 | 1 | 71 |
Module204 | 16 | 86 | GO:0009653 | biological_process | anatomical structure morphogenesis | 0.047064135 | 2 | 535 |
Module204 | 16 | 87 | GO:0031410 | cellular_component | cytoplasmic vesicle | 0.047375732 | 1 | 85 |
Module204 | 16 | 88 | GO:0016023 | cellular_component | cytoplasmic, membrane-bounded vesicle | 0.047375732 | 1 | 85 |
Module204 | 16 | 89 | GO:0019900 | molecular_function | kinase binding | 0.048641303 | 1 | 68 |
Module204 | 16 | 90 | GO:0031988 | cellular_component | membrane-bounded vesicle | 0.049013012 | 1 | 88 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G039683 | GRMZM2G013625 | 0.0355 |
GRMZM2G013625 | GRMZM2G152370 | 0.0362 |
GRMZM2G013625 | GRMZM2G305332 | 0.0359 |
pco137163 | GRMZM2G035421 | 0.179 |
pco137163 | GRMZM2G072584 | 0.0367 |
pco137163 | GRMZM2G305332 | 0.0772 |
pco137163 | GRMZM2G306216 | 0.0417 |
pco137163 | GRMZM5G803802 | 0.0789 |
GRMZM2G035421 | GRMZM2G126858 | 0.0366 |
GRMZM2G035421 | GRMZM2G305332 | 0.0467 |
GRMZM2G035421 | GRMZM2G340359 | 0.0391 |
GRMZM2G035421 | GRMZM5G803802 | 0.0353 |
GRMZM2G126858 | hb46 | 0.0364 |
GRMZM2G180251 | GRMZM5G803802 | 0.0909 |
GRMZM2G305332 | ras11E2 | 0.0363 |
GRMZM2G457630 | GRMZM2G057567 | 0.0418 |
GRMZM2G057567 | GRMZM5G803802 | 0.0416 |