This page contains information for Module210, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G000743 | knox3 | Module210 | AT4G08150 | KNAT1 | KNOTTED-like from Arabidopsis thaliana | KNOTTED-like from Arabidopsis thaliana | HB |
GRMZM2G017087 | kn1 | Module210 | AT4G08150 | KNAT1 | KNOTTED-like from Arabidopsis thaliana | KNOTTED-like from Arabidopsis thaliana | HB |
GRMZM2G028041 | rs1 | Module210 | AT4G08150 | KNAT1 | KNOTTED-like from Arabidopsis thaliana | KNOTTED-like from Arabidopsis thaliana | HB |
GRMZM2G030583 | tps26 | Module210 | AT5G23960 | TPS21 | terpene synthase 21 | terpene synthase 21 | |
GRMZM2G074645 | hb123 | Module210 | AT5G02030 | RPL | REPLUMLESS | POX (plant homeobox) family protein | HB |
GRMZM2G087267 | Module210 | AT3G23290 | LSH4 | LIGHT SENSITIVE HYPOCOTYLS 4 | Protein of unknown function (DUF640) | ||
GRMZM2G087741 | lg3 | Module210 | AT1G23380 | KNAT6 | KNOTTED1-like homeobox gene 6 | KNOTTED1-like homeobox gene 6 | HB |
GRMZM2G094241 | lg4 | Module210 | AT1G23380 | KNAT6 | KNOTTED1-like homeobox gene 6 | KNOTTED1-like homeobox gene 6 | HB |
GRMZM2G125976 | hb76 | Module210 | AT5G02030 | RPL | REPLUMLESS | POX (plant homeobox) family protein | HB |
GRMZM2G135447 | hb8 | Module210 | AT4G08150 | KNAT1 | KNOTTED-like from Arabidopsis thaliana | KNOTTED-like from Arabidopsis thaliana | HB |
GRMZM2G050825 | Module210 | AT3G51140 | AT3G51140 | Protein of unknown function (DUF3353) | |||
GRMZM2G154641 | hb48 | Module210 | AT5G02030 | RPL | REPLUMLESS | POX (plant homeobox) family protein | HB |
GRMZM2G166413 | Module210 | AT2G42800 | RLP29 | receptor like protein 29 | receptor like protein 29 | ||
GRMZM2G452178 | gn1 | Module210 | AT4G08150 | KNAT1 | KNOTTED-like from Arabidopsis thaliana | KNOTTED-like from Arabidopsis thaliana | HB |
GRMZM5G832409 | knox5 | Module210 | AT1G23380 | KNAT6 | KNOTTED1-like homeobox gene 6 | KNOTTED1-like homeobox gene 6 | HB |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module210 | 15 | 1 | GO:0043565 | molecular_function | sequence-specific DNA binding | 8.77E-17 | 11 | 460 |
Module210 | 15 | 2 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 6.97E-15 | 11 | 683 |
Module210 | 15 | 3 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 7.08E-15 | 11 | 684 |
Module210 | 15 | 4 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 6.69E-11 | 11 | 1293 |
Module210 | 15 | 5 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 6.69E-11 | 11 | 1293 |
Module210 | 15 | 6 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 6.69E-11 | 11 | 1293 |
Module210 | 15 | 7 | GO:0051252 | biological_process | regulation of RNA metabolic process | 7.34E-11 | 11 | 1304 |
Module210 | 15 | 8 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 9.33E-11 | 11 | 1333 |
Module210 | 15 | 9 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 1.30E-10 | 11 | 1374 |
Module210 | 15 | 10 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 1.30E-10 | 11 | 1374 |
Module210 | 15 | 11 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 1.69E-10 | 11 | 1407 |
Module210 | 15 | 12 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 1.71E-10 | 11 | 1409 |
Module210 | 15 | 13 | GO:0010468 | biological_process | regulation of gene expression | 1.78E-10 | 11 | 1414 |
Module210 | 15 | 14 | GO:0097659 | biological_process | nucleic acid-templated transcription | 1.78E-10 | 11 | 1414 |
Module210 | 15 | 15 | GO:0006351 | biological_process | transcription, DNA-templated | 1.78E-10 | 11 | 1414 |
Module210 | 15 | 16 | GO:0032774 | biological_process | RNA biosynthetic process | 1.85E-10 | 11 | 1419 |
Module210 | 15 | 17 | GO:0009889 | biological_process | regulation of biosynthetic process | 1.89E-10 | 11 | 1422 |
Module210 | 15 | 18 | GO:0080090 | biological_process | regulation of primary metabolic process | 4.12E-10 | 11 | 1527 |
Module210 | 15 | 19 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 4.27E-10 | 11 | 1532 |
Module210 | 15 | 20 | GO:0031323 | biological_process | regulation of cellular metabolic process | 4.99E-10 | 11 | 1554 |
Module210 | 15 | 21 | GO:0003677 | molecular_function | DNA binding | 5.00E-10 | 11 | 1891 |
Module210 | 15 | 22 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 6.81E-10 | 11 | 1599 |
Module210 | 15 | 23 | GO:0019222 | biological_process | regulation of metabolic process | 1.95E-09 | 11 | 1761 |
Module210 | 15 | 24 | GO:0018130 | biological_process | heterocycle biosynthetic process | 2.54E-09 | 11 | 1804 |
Module210 | 15 | 25 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 2.74E-09 | 11 | 1817 |
Module210 | 15 | 26 | GO:0016070 | biological_process | RNA metabolic process | 3.42E-09 | 11 | 1854 |
Module210 | 15 | 27 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 5.12E-09 | 11 | 1924 |
Module210 | 15 | 28 | GO:0090304 | biological_process | nucleic acid metabolic process | 2.04E-08 | 11 | 2185 |
Module210 | 15 | 29 | GO:0050794 | biological_process | regulation of cellular process | 5.17E-08 | 11 | 2381 |
Module210 | 15 | 30 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 9.04E-08 | 11 | 2507 |
Module210 | 15 | 31 | GO:0010467 | biological_process | gene expression | 9.23E-08 | 11 | 2512 |
Module210 | 15 | 32 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 9.81E-08 | 11 | 2526 |
Module210 | 15 | 33 | GO:0009059 | biological_process | macromolecule biosynthetic process | 9.89E-08 | 11 | 2528 |
Module210 | 15 | 34 | GO:0003676 | molecular_function | nucleic acid binding | 1.14E-07 | 11 | 3117 |
Module210 | 15 | 35 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 1.32E-07 | 11 | 2597 |
Module210 | 15 | 36 | GO:0050789 | biological_process | regulation of biological process | 2.47E-07 | 11 | 2751 |
Module210 | 15 | 37 | GO:0046483 | biological_process | heterocycle metabolic process | 3.83E-07 | 11 | 2866 |
Module210 | 15 | 38 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 4.50E-07 | 11 | 2909 |
Module210 | 15 | 39 | GO:0065007 | biological_process | biological regulation | 4.79E-07 | 11 | 2926 |
Module210 | 15 | 40 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 6.25E-07 | 11 | 2999 |
Module210 | 15 | 41 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 3.76E-06 | 11 | 3545 |
Module210 | 15 | 42 | GO:0044249 | biological_process | cellular biosynthetic process | 3.77E-06 | 11 | 3546 |
Module210 | 15 | 43 | GO:1901576 | biological_process | organic substance biosynthetic process | 4.51E-06 | 11 | 3606 |
Module210 | 15 | 44 | GO:0009058 | biological_process | biosynthetic process | 7.06E-06 | 11 | 3760 |
Module210 | 15 | 45 | GO:0006807 | biological_process | nitrogen compound metabolic process | 1.01E-05 | 11 | 3887 |
Module210 | 15 | 46 | GO:0005634 | cellular_component | nucleus | 1.66E-05 | 10 | 2423 |
Module210 | 15 | 47 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.000132969 | 11 | 4961 |
Module210 | 15 | 48 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.000267917 | 11 | 6456 |
Module210 | 15 | 49 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.000270092 | 11 | 6461 |
Module210 | 15 | 50 | GO:0043170 | biological_process | macromolecule metabolic process | 0.000377919 | 11 | 5482 |
Module210 | 15 | 51 | GO:0048440 | biological_process | carpel development | 0.000976728 | 2 | 53 |
Module210 | 15 | 52 | GO:0048467 | biological_process | gynoecium development | 0.001334388 | 2 | 62 |
Module210 | 15 | 53 | GO:0048445 | biological_process | carpel morphogenesis | 0.002669236 | 1 | 3 |
Module210 | 15 | 54 | GO:0003002 | biological_process | regionalization | 0.004354136 | 2 | 113 |
Module210 | 15 | 55 | GO:0048438 | biological_process | floral whorl development | 0.004354136 | 2 | 113 |
Module210 | 15 | 56 | GO:0044237 | biological_process | cellular metabolic process | 0.005023529 | 11 | 7053 |
Module210 | 15 | 57 | GO:0007389 | biological_process | pattern specification process | 0.005635976 | 2 | 129 |
Module210 | 15 | 58 | GO:0048437 | biological_process | floral organ development | 0.005721209 | 2 | 130 |
Module210 | 15 | 59 | GO:0044238 | biological_process | primary metabolic process | 0.007759778 | 11 | 7365 |
Module210 | 15 | 60 | GO:0009736 | biological_process | cytokinin-activated signaling pathway | 0.007988124 | 1 | 9 |
Module210 | 15 | 61 | GO:0071368 | biological_process | cellular response to cytokinin stimulus | 0.008872073 | 1 | 10 |
Module210 | 15 | 62 | GO:0009934 | biological_process | regulation of meristem structural organization | 0.010637805 | 1 | 12 |
Module210 | 15 | 63 | GO:0005488 | molecular_function | binding | 0.011554457 | 12 | 11313 |
Module210 | 15 | 64 | GO:0010093 | biological_process | specification of floral organ identity | 0.012400654 | 1 | 14 |
Module210 | 15 | 65 | GO:0071704 | biological_process | organic substance metabolic process | 0.013676339 | 11 | 7797 |
Module210 | 15 | 66 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.015032951 | 11 | 6165 |
Module210 | 15 | 67 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.015057001 | 11 | 6166 |
Module210 | 15 | 68 | GO:0001708 | biological_process | cell fate specification | 0.016795186 | 1 | 19 |
Module210 | 15 | 69 | GO:0048449 | biological_process | floral organ formation | 0.020297897 | 1 | 23 |
Module210 | 15 | 70 | GO:0008152 | biological_process | metabolic process | 0.022542312 | 12 | 9826 |
Module210 | 15 | 71 | GO:0045165 | biological_process | cell fate commitment | 0.02291742 | 1 | 26 |
Module210 | 15 | 72 | GO:0010333 | molecular_function | terpene synthase activity | 0.02316708 | 1 | 32 |
Module210 | 15 | 73 | GO:0048827 | biological_process | phyllome development | 0.023766567 | 2 | 274 |
Module210 | 15 | 74 | GO:0048444 | biological_process | floral organ morphogenesis | 0.026400131 | 1 | 30 |
Module210 | 15 | 75 | GO:0048563 | biological_process | post-embryonic organ morphogenesis | 0.026400131 | 1 | 30 |
Module210 | 15 | 76 | GO:0009908 | biological_process | flower development | 0.027272181 | 2 | 295 |
Module210 | 15 | 77 | GO:0016838 | molecular_function | carbon-oxygen lyase activity, acting on phosphates | 0.028168835 | 1 | 39 |
Module210 | 15 | 78 | GO:0090567 | biological_process | reproductive shoot system development | 0.029542874 | 2 | 308 |
Module210 | 15 | 79 | GO:0043229 | cellular_component | intracellular organelle | 0.03206084 | 11 | 6663 |
Module210 | 15 | 80 | GO:0043226 | cellular_component | organelle | 0.032153669 | 11 | 6665 |
Module210 | 15 | 81 | GO:0009933 | biological_process | meristem structural organization | 0.04107507 | 1 | 47 |
Module210 | 15 | 82 | GO:0009735 | biological_process | response to cytokinin | 0.041931954 | 1 | 48 |
Module210 | 15 | 83 | GO:0010051 | biological_process | xylem and phloem pattern formation | 0.041931954 | 1 | 48 |
Module210 | 15 | 84 | GO:0048532 | biological_process | anatomical structure arrangement | 0.042788136 | 1 | 49 |
Module210 | 15 | 85 | GO:0022603 | biological_process | regulation of anatomical structure morphogenesis | 0.044498397 | 1 | 51 |
Module210 | 15 | 86 | GO:0009706 | cellular_component | chloroplast inner membrane | 0.046751097 | 1 | 42 |
Module210 | 15 | 87 | GO:0009528 | cellular_component | plastid inner membrane | 0.048926532 | 1 | 44 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
knox3 | kn1 | 0.0657 |
knox3 | rs1 | 0.0487 |
knox3 | lg3 | 0.0388 |
knox3 | lg4 | 0.0423 |
knox3 | hb8 | 0.0435 |
knox3 | GRMZM2G166413 | 0.0359 |
knox3 | gn1 | 0.0462 |
knox3 | knox5 | 0.035 |
kn1 | rs1 | 0.0542 |
kn1 | tps26 | 0.0593 |
kn1 | GRMZM2G087267 | 0.0578 |
kn1 | lg3 | 0.088 |
kn1 | lg4 | 0.0809 |
kn1 | GRMZM2G166413 | 0.0376 |
kn1 | gn1 | 0.0435 |
kn1 | knox5 | 0.0539 |
rs1 | tps26 | 0.0798 |
rs1 | hb123 | 0.0548 |
rs1 | lg3 | 0.068 |
rs1 | lg4 | 0.0488 |
rs1 | hb76 | 0.0693 |
rs1 | hb8 | 0.0658 |
rs1 | gn1 | 0.1157 |
rs1 | knox5 | 0.0658 |
tps26 | lg3 | 0.0399 |
tps26 | gn1 | 0.0616 |
tps26 | knox5 | 0.0374 |
hb123 | hb76 | 0.0543 |
hb123 | gn1 | 0.0475 |
GRMZM2G087267 | lg3 | 0.0527 |
GRMZM2G087267 | lg4 | 0.0382 |
lg3 | lg4 | 0.0774 |
lg3 | gn1 | 0.0655 |
lg3 | knox5 | 0.0595 |
lg4 | gn1 | 0.0518 |
lg4 | knox5 | 0.0597 |
hb76 | hb48 | 0.0446 |
hb76 | gn1 | 0.0582 |
hb8 | GRMZM2G050825 | 0.0371 |
hb8 | gn1 | 0.0825 |
hb8 | knox5 | 0.0439 |
gn1 | knox5 | 0.054 |