This page contains information for Module215, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G019291 | Module215 | AT4G39870 | AT4G39870 | TLD-domain containing nucleolar protein | |||
GRMZM2G005865 | Module215 | ||||||
GRMZM2G041454 | Module215 | AT5G27400 | AT5G27400 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | |||
GRMZM2G093313 | kch4 | Module215 | AT5G46240 | KAT1 | potassium channel in Arabidopsis thaliana 1 | potassium channel in Arabidopsis thaliana 1 | |
GRMZM2G133421 | Module215 | AT5G07630 | AT5G07630 | lipid transporters | |||
GRMZM2G147891 | Module215 | AT4G13970 | AT4G13970 | zinc ion binding | |||
GRMZM2G155899 | Module215 | AT3G13490 | OVA5 | OVULE ABORTION 5 | Lysyl-tRNA synthetase, class II | ||
GRMZM2G301699 | Module215 | ||||||
GRMZM2G329033 | Module215 | AT1G07480 | AT1G07480 | Transcription factor IIA, alpha/beta subunit | |||
GRMZM2G132633 | Module215 | AT1G07480 | AT1G07480 | Transcription factor IIA, alpha/beta subunit | |||
GRMZM2G379804 | Module215 | AT3G54460 | AT3G54460 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein | SNF2 | ||
GRMZM2G451357 | Module215 | AT2G40930 | UBP5 | ubiquitin-specific protease 5 | ubiquitin-specific protease 5 | ||
GRMZM2G459642 | Module215 | AT3G12590 | AT3G12590 | ||||
GRMZM2G701310 | Module215 | ||||||
GRMZM5G848608 | Module215 | AT3G59660 | AT3G59660 | C2 domain-containing protein / GRAM domain-containing protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module215 | 15 | 1 | GO:0005672 | cellular_component | transcription factor TFIIA complex | 1.62E-06 | 2 | 4 |
Module215 | 15 | 2 | GO:0006367 | biological_process | transcription initiation from RNA polymerase II promoter | 1.98E-05 | 2 | 16 |
Module215 | 15 | 3 | GO:0016591 | cellular_component | DNA-directed RNA polymerase II, holoenzyme | 0.00014992 | 2 | 34 |
Module215 | 15 | 4 | GO:0044798 | cellular_component | nuclear transcription factor complex | 0.000177844 | 2 | 37 |
Module215 | 15 | 5 | GO:0090575 | cellular_component | RNA polymerase II transcription factor complex | 0.000177844 | 2 | 37 |
Module215 | 15 | 6 | GO:0006366 | biological_process | transcription from RNA polymerase II promoter | 0.000208606 | 2 | 51 |
Module215 | 15 | 7 | GO:0006352 | biological_process | DNA-templated transcription, initiation | 0.000225369 | 2 | 53 |
Module215 | 15 | 8 | GO:0055029 | cellular_component | nuclear DNA-directed RNA polymerase complex | 0.000229625 | 2 | 42 |
Module215 | 15 | 9 | GO:0000428 | cellular_component | DNA-directed RNA polymerase complex | 0.000229625 | 2 | 42 |
Module215 | 15 | 10 | GO:0030880 | cellular_component | RNA polymerase complex | 0.000229625 | 2 | 42 |
Module215 | 15 | 11 | GO:0005667 | cellular_component | transcription factor complex | 0.000326041 | 2 | 50 |
Module215 | 15 | 12 | GO:0003743 | molecular_function | translation initiation factor activity | 0.000420863 | 2 | 88 |
Module215 | 15 | 13 | GO:0061695 | cellular_component | transferase complex, transferring phosphorus-containing groups | 0.000676514 | 2 | 72 |
Module215 | 15 | 14 | GO:0006413 | biological_process | translational initiation | 0.000694127 | 2 | 93 |
Module215 | 15 | 15 | GO:0008135 | molecular_function | translation factor activity, RNA binding | 0.001060717 | 2 | 140 |
Module215 | 15 | 16 | GO:0005242 | molecular_function | inward rectifier potassium channel activity | 0.001827708 | 1 | 5 |
Module215 | 15 | 17 | GO:0044451 | cellular_component | nucleoplasm part | 0.002675761 | 2 | 144 |
Module215 | 15 | 18 | GO:0005654 | cellular_component | nucleoplasm | 0.003132421 | 2 | 156 |
Module215 | 15 | 19 | GO:0006412 | biological_process | translation | 0.003397952 | 3 | 781 |
Module215 | 15 | 20 | GO:0043043 | biological_process | peptide biosynthetic process | 0.00349872 | 3 | 789 |
Module215 | 15 | 21 | GO:0005249 | molecular_function | voltage-gated potassium channel activity | 0.003652631 | 1 | 10 |
Module215 | 15 | 22 | GO:0006518 | biological_process | peptide metabolic process | 0.003798908 | 3 | 812 |
Module215 | 15 | 23 | GO:0043604 | biological_process | amide biosynthetic process | 0.003934333 | 3 | 822 |
Module215 | 15 | 24 | GO:0022843 | molecular_function | voltage-gated cation channel activity | 0.004017281 | 1 | 11 |
Module215 | 15 | 25 | GO:0005267 | molecular_function | potassium channel activity | 0.004381821 | 1 | 12 |
Module215 | 15 | 26 | GO:0043603 | biological_process | cellular amide metabolic process | 0.004581363 | 3 | 867 |
Module215 | 15 | 27 | GO:0022834 | molecular_function | ligand-gated channel activity | 0.004746249 | 1 | 13 |
Module215 | 15 | 28 | GO:0015276 | molecular_function | ligand-gated ion channel activity | 0.004746249 | 1 | 13 |
Module215 | 15 | 29 | GO:0005261 | molecular_function | cation channel activity | 0.005474772 | 1 | 15 |
Module215 | 15 | 30 | GO:1990234 | cellular_component | transferase complex | 0.007812414 | 2 | 249 |
Module215 | 15 | 31 | GO:0099600 | #N/A | transmembrane receptor activity | 0.010924544 | 1 | 30 |
Module215 | 15 | 32 | GO:0005319 | molecular_function | lipid transporter activity | 0.011286976 | 1 | 31 |
Module215 | 15 | 33 | GO:0005244 | molecular_function | voltage-gated ion channel activity | 0.012011507 | 1 | 33 |
Module215 | 15 | 34 | GO:0022832 | molecular_function | voltage-gated channel activity | 0.012011507 | 1 | 33 |
Module215 | 15 | 35 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.014789576 | 3 | 1315 |
Module215 | 15 | 36 | GO:0015079 | molecular_function | potassium ion transmembrane transporter activity | 0.016349407 | 1 | 45 |
Module215 | 15 | 37 | GO:0022836 | molecular_function | gated channel activity | 0.016349407 | 1 | 45 |
Module215 | 15 | 38 | GO:0048481 | biological_process | plant ovule development | 0.018558229 | 1 | 42 |
Module215 | 15 | 39 | GO:0035670 | biological_process | plant-type ovary development | 0.018558229 | 1 | 42 |
Module215 | 15 | 40 | GO:0003723 | molecular_function | RNA binding | 0.018804213 | 2 | 611 |
Module215 | 15 | 41 | GO:0044267 | biological_process | cellular protein metabolic process | 0.019019812 | 4 | 2783 |
Module215 | 15 | 42 | GO:1902494 | cellular_component | catalytic complex | 0.022378773 | 2 | 431 |
Module215 | 15 | 43 | GO:0005216 | molecular_function | ion channel activity | 0.022467588 | 1 | 62 |
Module215 | 15 | 44 | GO:0006869 | biological_process | lipid transport | 0.022497413 | 1 | 51 |
Module215 | 15 | 45 | GO:0060089 | molecular_function | molecular transducer activity | 0.022826491 | 1 | 63 |
Module215 | 15 | 46 | GO:0004872 | molecular_function | receptor activity | 0.022826491 | 1 | 63 |
Module215 | 15 | 47 | GO:0048440 | biological_process | carpel development | 0.023370996 | 1 | 53 |
Module215 | 15 | 48 | GO:0022892 | molecular_function | substrate-specific transporter activity | 0.024195141 | 2 | 698 |
Module215 | 15 | 49 | GO:0010876 | biological_process | lipid localization | 0.02468015 | 1 | 56 |
Module215 | 15 | 50 | GO:0004812 | molecular_function | aminoacyl-tRNA ligase activity | 0.024977604 | 1 | 69 |
Module215 | 15 | 51 | GO:0016875 | molecular_function | ligase activity, forming carbon-oxygen bonds | 0.024977604 | 1 | 69 |
Module215 | 15 | 52 | GO:0016876 | molecular_function | ligase activity, forming aminoacyl-tRNA and related compounds | 0.024977604 | 1 | 69 |
Module215 | 15 | 53 | GO:0006813 | biological_process | potassium ion transport | 0.025116209 | 1 | 57 |
Module215 | 15 | 54 | GO:0022838 | molecular_function | substrate-specific channel activity | 0.026409486 | 1 | 73 |
Module215 | 15 | 55 | GO:0022803 | molecular_function | passive transmembrane transporter activity | 0.026409486 | 1 | 73 |
Module215 | 15 | 56 | GO:0015267 | molecular_function | channel activity | 0.026409486 | 1 | 73 |
Module215 | 15 | 57 | GO:0048467 | biological_process | gynoecium development | 0.027294071 | 1 | 62 |
Module215 | 15 | 58 | GO:0007623 | biological_process | circadian rhythm | 0.027294071 | 1 | 62 |
Module215 | 15 | 59 | GO:0048511 | biological_process | rhythmic process | 0.027294071 | 1 | 62 |
Module215 | 15 | 60 | GO:0009644 | biological_process | response to high light intensity | 0.028164079 | 1 | 64 |
Module215 | 15 | 61 | GO:0006418 | biological_process | tRNA aminoacylation for protein translation | 0.029902151 | 1 | 68 |
Module215 | 15 | 62 | GO:0043038 | biological_process | amino acid activation | 0.031204005 | 1 | 71 |
Module215 | 15 | 63 | GO:0043039 | biological_process | tRNA aminoacylation | 0.031204005 | 1 | 71 |
Module215 | 15 | 64 | GO:0019538 | biological_process | protein metabolic process | 0.03277594 | 4 | 3241 |
Module215 | 15 | 65 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.033701862 | 3 | 1779 |
Module215 | 15 | 66 | GO:0016070 | biological_process | RNA metabolic process | 0.037630148 | 3 | 1854 |
Module215 | 15 | 67 | GO:0010118 | biological_process | stomatal movement | 0.041566517 | 1 | 95 |
Module215 | 15 | 68 | GO:0031981 | cellular_component | nuclear lumen | 0.041675473 | 2 | 601 |
Module215 | 15 | 69 | GO:0009642 | biological_process | response to light intensity | 0.042855311 | 1 | 98 |
Module215 | 15 | 70 | GO:0005215 | molecular_function | transporter activity | 0.043753447 | 2 | 959 |
Module215 | 15 | 71 | GO:0048438 | biological_process | floral whorl development | 0.049277641 | 1 | 113 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G019291 | GRMZM2G005865 | 0.0376 |
GRMZM2G005865 | GRMZM2G041454 | 0.0387 |
GRMZM2G005865 | kch4 | 0.0504 |
GRMZM2G005865 | GRMZM2G133421 | 0.0359 |
GRMZM2G005865 | GRMZM2G155899 | 0.0395 |
GRMZM2G005865 | GRMZM2G329033 | 0.0405 |
GRMZM2G005865 | GRMZM2G379804 | 0.0439 |
GRMZM2G005865 | GRMZM2G451357 | 0.0388 |
GRMZM2G005865 | GRMZM2G701310 | 0.0746 |
GRMZM2G005865 | GRMZM5G848608 | 0.0406 |
GRMZM2G041454 | GRMZM2G147891 | 0.04 |
GRMZM2G041454 | GRMZM2G459642 | 0.0359 |
GRMZM2G041454 | GRMZM2G701310 | 0.0449 |
kch4 | GRMZM2G301699 | 0.0408 |
GRMZM2G329033 | GRMZM2G132633 | 0.0421 |
GRMZM2G329033 | GRMZM5G848608 | 0.041 |