This page contains information for Module216, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G019411 | Module216 | AT3G29090 | PME31 | pectin methylesterase 31 | pectin methylesterase 31 | ||
GRMZM2G001304 | trps12 | Module216 | AT1G78580 | TPS1 | trehalose-6-phosphate synthase | trehalose-6-phosphate synthase | |
GRMZM2G068943 | trps1 | Module216 | AT1G78580 | TPS1 | trehalose-6-phosphate synthase | trehalose-6-phosphate synthase | |
GRMZM2G069807 | Module216 | AT3G60380 | AT3G60380 | ||||
GRMZM2G131961 | bzip27 | Module216 | AT5G10030 | TGA4 | TGACG motif-binding factor 4 | TGACG motif-binding factor 4 | bZIP |
AC233922.1_FG008 | Module216 | AT4G27960 | UBC9 | ubiquitin conjugating enzyme 9 | ubiquitin conjugating enzyme 9 | ||
GRMZM2G133966 | Module216 | AT1G78580 | TPS1 | trehalose-6-phosphate synthase | trehalose-6-phosphate synthase | ||
GRMZM2G164814 | Module216 | AT1G77380 | AAP3 | amino acid permease 3 | amino acid permease 3 | ||
GRMZM2G170625 | Module216 | AT1G19715 | AT1G19715 | Mannose-binding lectin superfamily protein | |||
GRMZM2G069198 | nrat1 | Module216 | AT1G80830 | NRAMP1 | natural resistance-associated macrophage protein 1 | natural resistance-associated macrophage protein 1 | |
GRMZM2G373859 | Module216 | AT5G57685 | GDU3 | glutamine dumper 3 | glutamine dumper 3 | ||
GRMZM2G378852 | Module216 | AT2G30040 | MAPKKK14 | mitogen-activated protein kinase kinase kinase 14 | mitogen-activated protein kinase kinase kinase 14 | ||
GRMZM2G401848 | Module216 | AT2G16600 | ROC3 | rotamase CYP 3 | rotamase CYP 3 | ||
GRMZM2G474602 | Module216 | ||||||
GRMZM2G481362 | Module216 | AT1G52700 | AT1G52700 | alpha/beta-Hydrolases superfamily protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module216 | 15 | 1 | GO:0005992 | biological_process | trehalose biosynthetic process | 8.29E-07 | 3 | 30 |
Module216 | 15 | 2 | GO:0005991 | biological_process | trehalose metabolic process | 9.17E-07 | 3 | 31 |
Module216 | 15 | 3 | GO:0046351 | biological_process | disaccharide biosynthetic process | 2.01E-06 | 3 | 40 |
Module216 | 15 | 4 | GO:0009312 | biological_process | oligosaccharide biosynthetic process | 3.29E-06 | 3 | 47 |
Module216 | 15 | 5 | GO:0005984 | biological_process | disaccharide metabolic process | 1.25E-05 | 3 | 73 |
Module216 | 15 | 6 | GO:0009311 | biological_process | oligosaccharide metabolic process | 2.27E-05 | 3 | 89 |
Module216 | 15 | 7 | GO:0034637 | biological_process | cellular carbohydrate biosynthetic process | 0.000170724 | 3 | 175 |
Module216 | 15 | 8 | GO:0016051 | biological_process | carbohydrate biosynthetic process | 0.000362866 | 3 | 226 |
Module216 | 15 | 9 | GO:0044262 | biological_process | cellular carbohydrate metabolic process | 0.000992791 | 3 | 319 |
Module216 | 15 | 10 | GO:0003825 | molecular_function | alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 0.001827819 | 1 | 3 |
Module216 | 15 | 11 | GO:0070574 | biological_process | cadmium ion transmembrane transport | 0.002002373 | 1 | 3 |
Module216 | 15 | 12 | GO:0071421 | biological_process | manganese ion transmembrane transport | 0.002002373 | 1 | 3 |
Module216 | 15 | 13 | GO:0005975 | biological_process | carbohydrate metabolic process | 0.002356823 | 4 | 954 |
Module216 | 15 | 14 | GO:0015086 | molecular_function | cadmium ion transmembrane transporter activity | 0.002436423 | 1 | 4 |
Module216 | 15 | 15 | GO:0005384 | molecular_function | manganese ion transmembrane transporter activity | 0.002436423 | 1 | 4 |
Module216 | 15 | 16 | GO:0044723 | biological_process | single-organism carbohydrate metabolic process | 0.003944428 | 3 | 516 |
Module216 | 15 | 17 | GO:0055071 | biological_process | manganese ion homeostasis | 0.00400118 | 1 | 6 |
Module216 | 15 | 18 | GO:0015691 | biological_process | cadmium ion transport | 0.004666658 | 1 | 7 |
Module216 | 15 | 19 | GO:0006828 | biological_process | manganese ion transport | 0.005331741 | 1 | 8 |
Module216 | 15 | 20 | GO:0009862 | biological_process | systemic acquired resistance, salicylic acid mediated signaling pathway | 0.005996429 | 1 | 9 |
Module216 | 15 | 21 | GO:0005381 | molecular_function | iron ion transmembrane transporter activity | 0.007898854 | 1 | 13 |
Module216 | 15 | 22 | GO:0034755 | biological_process | iron ion transmembrane transport | 0.007988124 | 1 | 12 |
Module216 | 15 | 23 | GO:0071554 | biological_process | cell wall organization or biogenesis | 0.011150634 | 2 | 248 |
Module216 | 15 | 24 | GO:1901701 | biological_process | cellular response to oxygen-containing compound | 0.011410695 | 2 | 251 |
Module216 | 15 | 25 | GO:0045488 | biological_process | pectin metabolic process | 0.011960875 | 1 | 18 |
Module216 | 15 | 26 | GO:0010393 | biological_process | galacturonan metabolic process | 0.011960875 | 1 | 18 |
Module216 | 15 | 27 | GO:0010182 | biological_process | sugar mediated signaling pathway | 0.012621623 | 1 | 19 |
Module216 | 15 | 28 | GO:0009756 | biological_process | carbohydrate mediated signaling | 0.012621623 | 1 | 19 |
Module216 | 15 | 29 | GO:0045330 | molecular_function | aspartyl esterase activity | 0.015140216 | 1 | 25 |
Module216 | 15 | 30 | GO:0071322 | biological_process | cellular response to carbohydrate stimulus | 0.015919477 | 1 | 24 |
Module216 | 15 | 31 | GO:0009863 | biological_process | salicylic acid mediated signaling pathway | 0.016577872 | 1 | 25 |
Module216 | 15 | 32 | GO:0006826 | biological_process | iron ion transport | 0.018550707 | 1 | 28 |
Module216 | 15 | 33 | GO:0071446 | biological_process | cellular response to salicylic acid stimulus | 0.019863975 | 1 | 30 |
Module216 | 15 | 34 | GO:0046915 | molecular_function | transition metal ion transmembrane transporter activity | 0.021736306 | 1 | 36 |
Module216 | 15 | 35 | GO:0055076 | biological_process | transition metal ion homeostasis | 0.023794413 | 1 | 36 |
Module216 | 15 | 36 | GO:0071310 | biological_process | cellular response to organic substance | 0.025411669 | 2 | 383 |
Module216 | 15 | 37 | GO:0009627 | biological_process | systemic acquired resistance | 0.027059069 | 1 | 41 |
Module216 | 15 | 38 | GO:0000413 | biological_process | protein peptidyl-prolyl isomerization | 0.028362212 | 1 | 43 |
Module216 | 15 | 39 | GO:0018208 | biological_process | peptidyl-proline modification | 0.030314017 | 1 | 46 |
Module216 | 15 | 40 | GO:0003755 | molecular_function | peptidyl-prolyl cis-trans isomerase activity | 0.033627414 | 1 | 56 |
Module216 | 15 | 41 | GO:0070887 | biological_process | cellular response to chemical stimulus | 0.034285141 | 2 | 450 |
Module216 | 15 | 42 | GO:0016859 | molecular_function | cis-trans isomerase activity | 0.035399815 | 1 | 59 |
Module216 | 15 | 43 | GO:0044238 | biological_process | primary metabolic process | 0.036789172 | 8 | 7365 |
Module216 | 15 | 44 | GO:0009987 | biological_process | cellular process | 0.037324818 | 9 | 9353 |
Module216 | 15 | 45 | GO:0072509 | molecular_function | divalent inorganic cation transmembrane transporter activity | 0.037758466 | 1 | 63 |
Module216 | 15 | 46 | GO:0000041 | biological_process | transition metal ion transport | 0.040664905 | 1 | 62 |
Module216 | 15 | 47 | GO:0055065 | biological_process | metal ion homeostasis | 0.042594724 | 1 | 65 |
Module216 | 15 | 48 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.043150527 | 3 | 1244 |
Module216 | 15 | 49 | GO:0042545 | biological_process | cell wall modification | 0.044521092 | 1 | 68 |
Module216 | 15 | 50 | GO:0070838 | biological_process | divalent metal ion transport | 0.045162449 | 1 | 69 |
Module216 | 15 | 51 | GO:0009832 | biological_process | plant-type cell wall biogenesis | 0.045162449 | 1 | 69 |
Module216 | 15 | 52 | GO:0055080 | biological_process | cation homeostasis | 0.046444015 | 1 | 71 |
Module216 | 15 | 53 | GO:0030599 | molecular_function | pectinesterase activity | 0.046557249 | 1 | 78 |
Module216 | 15 | 54 | GO:0072511 | biological_process | divalent inorganic cation transport | 0.047084224 | 1 | 72 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G019411 | trps12 | 0.0356 |
GRMZM2G019411 | GRMZM2G170625 | 0.0385 |
trps12 | trps1 | 0.0892 |
trps12 | GRMZM2G133966 | 0.2182 |
trps12 | GRMZM2G170625 | 0.0525 |
trps12 | GRMZM2G373859 | 0.0361 |
trps1 | GRMZM2G069807 | 0.0351 |
trps1 | GRMZM2G133966 | 0.0676 |
GRMZM2G069807 | GRMZM2G378852 | 0.0403 |
bzip27 | GRMZM2G401848 | 0.0387 |
AC233922.1_FG008 | GRMZM2G164814 | 0.0458 |
AC233922.1_FG008 | GRMZM2G170625 | 0.0361 |
GRMZM2G164814 | GRMZM2G170625 | 0.0482 |
GRMZM2G170625 | nrat1 | 0.0377 |
GRMZM2G170625 | GRMZM2G401848 | 0.0775 |
GRMZM2G170625 | GRMZM2G474602 | 0.0547 |
GRMZM2G170625 | GRMZM2G481362 | 0.0415 |
GRMZM2G401848 | GRMZM2G474602 | 0.0379 |
GRMZM2G401848 | GRMZM2G481362 | 0.0626 |