This page contains information for Module221, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G038158 | wrky8 | Module221 | AT5G52830 | WRKY27 | WRKY DNA-binding protein 27 | WRKY DNA-binding protein 27 | WRKY |
GRMZM2G016637 | thx5 | Module221 | AT5G01380 | AT5G01380 | Homeodomain-like superfamily protein | Trihelix | |
GRMZM2G048450 | wrky2 | Module221 | AT5G52830 | WRKY27 | WRKY DNA-binding protein 27 | WRKY DNA-binding protein 27 | WRKY |
GRMZM2G054588 | Module221 | AT4G08330 | AT4G08330 | ||||
GRMZM2G068826 | Module221 | ||||||
GRMZM2G090594 | wrky67 | Module221 | AT2G24570 | WRKY17 | WRKY DNA-binding protein 17 | WRKY DNA-binding protein 17 | WRKY |
GRMZM2G071907 | wrky50 | Module221 | AT2G24570 | WRKY17 | WRKY DNA-binding protein 17 | WRKY DNA-binding protein 17 | WRKY |
GRMZM2G091331 | wrky14 | Module221 | AT2G24570 | WRKY17 | WRKY DNA-binding protein 17 | WRKY DNA-binding protein 17 | WRKY |
GRMZM2G101409 | Module221 | AT3G56880 | AT3G56880 | VQ motif-containing protein | |||
GRMZM2G102583 | wrky105 | Module221 | AT2G24570 | WRKY17 | WRKY DNA-binding protein 17 | WRKY DNA-binding protein 17 | WRKY |
GRMZM2G130943 | Module221 | AT4G33920 | AT4G33920 | Protein phosphatase 2C family protein | |||
GRMZM2G144109 | Module221 | AT2G28890 | PLL4 | poltergeist like 4 | poltergeist like 4 | ||
GRMZM2G148561 | wrky94 | Module221 | AT4G31550 | WRKY11 | WRKY DNA-binding protein 11 | WRKY DNA-binding protein 11 | WRKY |
GRMZM2G174917 | ereb47 | Module221 | AT4G36900 | RAP2.10 | related to AP2 10 | related to AP2 10 | AP2-EREBP |
GRMZM2G332703 | Module221 | AT5G15510 | AT5G15510 | TPX2 (targeting protein for Xklp2) protein family |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module221 | 15 | 1 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 1.28E-09 | 8 | 683 |
Module221 | 15 | 2 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 1.30E-09 | 8 | 684 |
Module221 | 15 | 3 | GO:0043565 | molecular_function | sequence-specific DNA binding | 3.90E-09 | 7 | 460 |
Module221 | 15 | 4 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 5.80E-08 | 8 | 1293 |
Module221 | 15 | 5 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 5.80E-08 | 8 | 1293 |
Module221 | 15 | 6 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 5.80E-08 | 8 | 1293 |
Module221 | 15 | 7 | GO:0051252 | biological_process | regulation of RNA metabolic process | 6.20E-08 | 8 | 1304 |
Module221 | 15 | 8 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 7.39E-08 | 8 | 1333 |
Module221 | 15 | 9 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 9.39E-08 | 8 | 1374 |
Module221 | 15 | 10 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 9.39E-08 | 8 | 1374 |
Module221 | 15 | 11 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 1.13E-07 | 8 | 1407 |
Module221 | 15 | 12 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 1.15E-07 | 8 | 1409 |
Module221 | 15 | 13 | GO:0010468 | biological_process | regulation of gene expression | 1.18E-07 | 8 | 1414 |
Module221 | 15 | 14 | GO:0097659 | biological_process | nucleic acid-templated transcription | 1.18E-07 | 8 | 1414 |
Module221 | 15 | 15 | GO:0006351 | biological_process | transcription, DNA-templated | 1.18E-07 | 8 | 1414 |
Module221 | 15 | 16 | GO:0032774 | biological_process | RNA biosynthetic process | 1.21E-07 | 8 | 1419 |
Module221 | 15 | 17 | GO:0009889 | biological_process | regulation of biosynthetic process | 1.23E-07 | 8 | 1422 |
Module221 | 15 | 18 | GO:0080090 | biological_process | regulation of primary metabolic process | 2.17E-07 | 8 | 1527 |
Module221 | 15 | 19 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 2.22E-07 | 8 | 1532 |
Module221 | 15 | 20 | GO:0031323 | biological_process | regulation of cellular metabolic process | 2.49E-07 | 8 | 1554 |
Module221 | 15 | 21 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 3.12E-07 | 8 | 1599 |
Module221 | 15 | 22 | GO:0019222 | biological_process | regulation of metabolic process | 6.67E-07 | 8 | 1761 |
Module221 | 15 | 23 | GO:0018130 | biological_process | heterocycle biosynthetic process | 8.07E-07 | 8 | 1804 |
Module221 | 15 | 24 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 8.54E-07 | 8 | 1817 |
Module221 | 15 | 25 | GO:0016070 | biological_process | RNA metabolic process | 1.00E-06 | 8 | 1854 |
Module221 | 15 | 26 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 1.34E-06 | 8 | 1924 |
Module221 | 15 | 27 | GO:0090304 | biological_process | nucleic acid metabolic process | 3.64E-06 | 8 | 2185 |
Module221 | 15 | 28 | GO:0003677 | molecular_function | DNA binding | 3.68E-06 | 8 | 1891 |
Module221 | 15 | 29 | GO:0050794 | biological_process | regulation of cellular process | 7.14E-06 | 8 | 2381 |
Module221 | 15 | 30 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 1.07E-05 | 8 | 2507 |
Module221 | 15 | 31 | GO:0010467 | biological_process | gene expression | 1.09E-05 | 8 | 2512 |
Module221 | 15 | 32 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 1.13E-05 | 8 | 2526 |
Module221 | 15 | 33 | GO:0009059 | biological_process | macromolecule biosynthetic process | 1.14E-05 | 8 | 2528 |
Module221 | 15 | 34 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 1.41E-05 | 8 | 2597 |
Module221 | 15 | 35 | GO:0050789 | biological_process | regulation of biological process | 2.21E-05 | 8 | 2751 |
Module221 | 15 | 36 | GO:0046483 | biological_process | heterocycle metabolic process | 3.03E-05 | 8 | 2866 |
Module221 | 15 | 37 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 3.41E-05 | 8 | 2909 |
Module221 | 15 | 38 | GO:0065007 | biological_process | biological regulation | 3.56E-05 | 8 | 2926 |
Module221 | 15 | 39 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 4.31E-05 | 8 | 2999 |
Module221 | 15 | 40 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.000123618 | 9 | 4961 |
Module221 | 15 | 41 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.000157289 | 8 | 3545 |
Module221 | 15 | 42 | GO:0044249 | biological_process | cellular biosynthetic process | 0.000157631 | 8 | 3546 |
Module221 | 15 | 43 | GO:0003676 | molecular_function | nucleic acid binding | 0.000160246 | 8 | 3117 |
Module221 | 15 | 44 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.000179368 | 8 | 3606 |
Module221 | 15 | 45 | GO:0009058 | biological_process | biosynthetic process | 0.000247374 | 8 | 3760 |
Module221 | 15 | 46 | GO:0043170 | biological_process | macromolecule metabolic process | 0.000303885 | 9 | 5482 |
Module221 | 15 | 47 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.000319159 | 8 | 3887 |
Module221 | 15 | 48 | GO:0044237 | biological_process | cellular metabolic process | 0.0029394 | 9 | 7053 |
Module221 | 15 | 49 | GO:0044238 | biological_process | primary metabolic process | 0.004340528 | 9 | 7365 |
Module221 | 15 | 50 | GO:0071704 | biological_process | organic substance metabolic process | 0.007251925 | 9 | 7797 |
Module221 | 15 | 51 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.026352912 | 8 | 6456 |
Module221 | 15 | 52 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.026484286 | 8 | 6461 |
Module221 | 15 | 53 | GO:0010200 | biological_process | response to chitin | 0.032262336 | 1 | 49 |
Module221 | 15 | 54 | GO:0009987 | biological_process | cellular process | 0.037324818 | 9 | 9353 |
Module221 | 15 | 55 | GO:0004722 | molecular_function | protein serine/threonine phosphatase activity | 0.042101481 | 1 | 64 |
Module221 | 15 | 56 | GO:0010243 | biological_process | response to organonitrogen compound | 0.047724051 | 1 | 73 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
wrky8 | thx5 | 0.0446 |
wrky8 | wrky2 | 0.1031 |
wrky8 | wrky14 | 0.0417 |
wrky8 | GRMZM2G144109 | 0.0548 |
thx5 | GRMZM2G054588 | 0.0439 |
thx5 | GRMZM2G130943 | 0.036 |
wrky2 | GRMZM2G068826 | 0.0364 |
wrky2 | wrky14 | 0.0557 |
wrky2 | GRMZM2G101409 | 0.0505 |
wrky2 | GRMZM2G144109 | 0.0556 |
wrky2 | GRMZM2G332703 | 0.049 |
wrky67 | wrky50 | 0.038 |
wrky67 | wrky105 | 0.0453 |
wrky67 | wrky94 | 0.0549 |
wrky67 | ereb47 | 0.0356 |
wrky50 | wrky14 | 0.0448 |
wrky50 | wrky105 | 0.0382 |
wrky14 | wrky105 | 0.0478 |