This page contains information for Module239, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC217840.3_FG001 | Module239 | AT2G17695 | AT2G17695 | ||||
AC194970.5_FG001 | ggps1 | Module239 | AT4G36810 | GGPS1 | geranylgeranyl pyrophosphate synthase 1 | geranylgeranyl pyrophosphate synthase 1 | |
GRMZM2G058451 | bhlh164 | Module239 | AT5G54680 | ILR3 | iaa-leucine resistant3 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
AC208023.3_FG001 | Module239 | AT4G24920 | AT4G24920 | secE/sec61-gamma protein transport protein | |||
GRMZM2G089491 | Module239 | AT4G24920 | AT4G24920 | secE/sec61-gamma protein transport protein | |||
GRMZM2G132777 | Module239 | AT3G57560 | NAGK | N-acetyl-l-glutamate kinase | N-acetyl-l-glutamate kinase | ||
GRMZM2G136270 | Module239 | ||||||
GRMZM2G049211 | Module239 | AT3G52850 | VSR1 | vacuolar sorting receptor homolog 1 | vacuolar sorting receptor homolog 1 | ||
GRMZM2G168119 | Module239 | AT5G53400 | BOB1 | BOBBER1 | HSP20-like chaperones superfamily protein | ||
GRMZM2G304575 | Module239 | AT5G59910 | HTB4 | Histone superfamily protein | |||
GRMZM5G826216 | Module239 | AT1G53710 | AT1G53710 | Calcineurin-like metallo-phosphoesterase superfamily protein | |||
GRMZM5G846097 | Module239 | AT2G43780 | AT2G43780 | ||||
GRMZM2G014419 | Module239 | AT2G01080 | AT2G01080 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module239 | 13 | 1 | GO:0022884 | molecular_function | macromolecule transmembrane transporter activity | 1.33E-05 | 2 | 16 |
Module239 | 13 | 2 | GO:0008320 | molecular_function | protein transmembrane transporter activity | 1.33E-05 | 2 | 16 |
Module239 | 13 | 3 | GO:0015450 | molecular_function | P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.33E-05 | 2 | 16 |
Module239 | 13 | 4 | GO:0008565 | molecular_function | protein transporter activity | 0.000202083 | 2 | 61 |
Module239 | 13 | 5 | GO:0003991 | molecular_function | acetylglutamate kinase activity | 0.000731417 | 1 | 2 |
Module239 | 13 | 6 | GO:0006605 | biological_process | protein targeting | 0.001095828 | 2 | 117 |
Module239 | 13 | 7 | GO:0010450 | biological_process | inflorescence meristem growth | 0.001779953 | 1 | 4 |
Module239 | 13 | 8 | GO:0015399 | molecular_function | primary active transmembrane transporter activity | 0.001802729 | 2 | 183 |
Module239 | 13 | 9 | GO:0015405 | molecular_function | P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.001802729 | 2 | 183 |
Module239 | 13 | 10 | GO:0004349 | molecular_function | glutamate 5-kinase activity | 0.001827708 | 1 | 5 |
Module239 | 13 | 11 | GO:0048833 | biological_process | specification of floral organ number | 0.002224528 | 1 | 5 |
Module239 | 13 | 12 | GO:0009513 | cellular_component | etioplast | 0.002556575 | 1 | 3 |
Module239 | 13 | 13 | GO:0004311 | molecular_function | farnesyltranstransferase activity | 0.002558011 | 1 | 7 |
Module239 | 13 | 14 | GO:0051501 | biological_process | diterpene phytoalexin metabolic process | 0.003113184 | 1 | 7 |
Module239 | 13 | 15 | GO:0006526 | biological_process | arginine biosynthetic process | 0.003113184 | 1 | 7 |
Module239 | 13 | 16 | GO:0048832 | biological_process | specification of organ number | 0.003113184 | 1 | 7 |
Module239 | 13 | 17 | GO:0048448 | biological_process | stamen morphogenesis | 0.003557265 | 1 | 8 |
Module239 | 13 | 18 | GO:1902582 | biological_process | single-organism intracellular transport | 0.004087593 | 2 | 228 |
Module239 | 13 | 19 | GO:0019202 | molecular_function | amino acid kinase activity | 0.004746249 | 1 | 13 |
Module239 | 13 | 20 | GO:0006561 | biological_process | proline biosynthetic process | 0.004888517 | 1 | 11 |
Module239 | 13 | 21 | GO:0016774 | molecular_function | phosphotransferase activity, carboxyl group as acceptor | 0.006202851 | 1 | 17 |
Module239 | 13 | 22 | GO:0009404 | biological_process | toxin metabolic process | 0.006218288 | 1 | 14 |
Module239 | 13 | 23 | GO:0006525 | biological_process | arginine metabolic process | 0.006218288 | 1 | 14 |
Module239 | 13 | 24 | GO:0052314 | biological_process | phytoalexin metabolic process | 0.006218288 | 1 | 14 |
Module239 | 13 | 25 | GO:0022804 | molecular_function | active transmembrane transporter activity | 0.006540941 | 2 | 353 |
Module239 | 13 | 26 | GO:0006560 | biological_process | proline metabolic process | 0.006661215 | 1 | 15 |
Module239 | 13 | 27 | GO:0006886 | biological_process | intracellular protein transport | 0.006938126 | 2 | 299 |
Module239 | 13 | 28 | GO:0009880 | biological_process | embryonic pattern specification | 0.007103978 | 1 | 16 |
Module239 | 13 | 29 | GO:0034613 | biological_process | cellular protein localization | 0.007915406 | 2 | 320 |
Module239 | 13 | 30 | GO:0070727 | biological_process | cellular macromolecule localization | 0.008800681 | 2 | 338 |
Module239 | 13 | 31 | GO:0004659 | molecular_function | prenyltransferase activity | 0.009473711 | 1 | 26 |
Module239 | 13 | 32 | GO:0016101 | biological_process | diterpenoid metabolic process | 0.010640165 | 1 | 24 |
Module239 | 13 | 33 | GO:0046907 | biological_process | intracellular transport | 0.011657475 | 2 | 391 |
Module239 | 13 | 34 | GO:0009084 | biological_process | glutamine family amino acid biosynthetic process | 0.012404319 | 1 | 28 |
Module239 | 13 | 35 | GO:0048444 | biological_process | floral organ morphogenesis | 0.013285413 | 1 | 30 |
Module239 | 13 | 36 | GO:0048563 | biological_process | post-embryonic organ morphogenesis | 0.013285413 | 1 | 30 |
Module239 | 13 | 37 | GO:0010229 | biological_process | inflorescence development | 0.013725714 | 1 | 31 |
Module239 | 13 | 38 | GO:0015031 | biological_process | protein transport | 0.014054886 | 2 | 431 |
Module239 | 13 | 39 | GO:0045184 | biological_process | establishment of protein localization | 0.014305801 | 2 | 435 |
Module239 | 13 | 40 | GO:0046983 | molecular_function | protein dimerization activity | 0.01475264 | 2 | 538 |
Module239 | 13 | 41 | GO:0035266 | biological_process | meristem growth | 0.015045634 | 1 | 34 |
Module239 | 13 | 42 | GO:0008104 | biological_process | protein localization | 0.015525009 | 2 | 454 |
Module239 | 13 | 43 | GO:0051649 | biological_process | establishment of localization in cell | 0.017334451 | 2 | 481 |
Module239 | 13 | 44 | GO:0016597 | molecular_function | amino acid binding | 0.018512398 | 1 | 51 |
Module239 | 13 | 45 | GO:0022891 | molecular_function | substrate-specific transmembrane transporter activity | 0.019631108 | 2 | 625 |
Module239 | 13 | 46 | GO:0051641 | biological_process | cellular localization | 0.020695029 | 2 | 528 |
Module239 | 13 | 47 | GO:0033036 | biological_process | macromolecule localization | 0.021822785 | 2 | 543 |
Module239 | 13 | 48 | GO:0009064 | biological_process | glutamine family amino acid metabolic process | 0.022497413 | 1 | 51 |
Module239 | 13 | 49 | GO:0048466 | biological_process | androecium development | 0.022934286 | 1 | 52 |
Module239 | 13 | 50 | GO:0048443 | biological_process | stamen development | 0.022934286 | 1 | 52 |
Module239 | 13 | 51 | GO:0022892 | molecular_function | substrate-specific transporter activity | 0.024195141 | 2 | 698 |
Module239 | 13 | 52 | GO:0031406 | molecular_function | carboxylic acid binding | 0.027482248 | 1 | 76 |
Module239 | 13 | 53 | GO:0043177 | molecular_function | organic acid binding | 0.027482248 | 1 | 76 |
Module239 | 13 | 54 | GO:0022857 | molecular_function | transmembrane transporter activity | 0.027906057 | 2 | 753 |
Module239 | 13 | 55 | GO:0009965 | biological_process | leaf morphogenesis | 0.032071098 | 1 | 73 |
Module239 | 13 | 56 | GO:0071702 | biological_process | organic substance transport | 0.036753561 | 2 | 717 |
Module239 | 13 | 57 | GO:0006721 | biological_process | terpenoid metabolic process | 0.039845875 | 1 | 91 |
Module239 | 13 | 58 | GO:0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups | 0.039925189 | 1 | 111 |
Module239 | 13 | 59 | GO:0009886 | biological_process | post-embryonic morphogenesis | 0.041566517 | 1 | 95 |
Module239 | 13 | 60 | GO:0008299 | biological_process | isoprenoid biosynthetic process | 0.043713705 | 1 | 100 |
Module239 | 13 | 61 | GO:0005215 | molecular_function | transporter activity | 0.043753447 | 2 | 959 |
Module239 | 13 | 62 | GO:0034728 | biological_process | nucleosome organization | 0.045428568 | 1 | 104 |
Module239 | 13 | 63 | GO:0006334 | biological_process | nucleosome assembly | 0.045428568 | 1 | 104 |
Module239 | 13 | 64 | GO:0031497 | biological_process | chromatin assembly | 0.046285038 | 1 | 106 |
Module239 | 13 | 65 | GO:0048569 | biological_process | post-embryonic organ development | 0.046285038 | 1 | 106 |
Module239 | 13 | 66 | GO:0065004 | biological_process | protein-DNA complex assembly | 0.046713032 | 1 | 107 |
Module239 | 13 | 67 | GO:0071824 | biological_process | protein-DNA complex subunit organization | 0.046713032 | 1 | 107 |
Module239 | 13 | 68 | GO:0006333 | biological_process | chromatin assembly or disassembly | 0.047140867 | 1 | 108 |
Module239 | 13 | 69 | GO:0009887 | biological_process | organ morphogenesis | 0.048423411 | 1 | 111 |
Module239 | 13 | 70 | GO:0006323 | biological_process | DNA packaging | 0.048850606 | 1 | 112 |
Module239 | 13 | 71 | GO:0003002 | biological_process | regionalization | 0.049277641 | 1 | 113 |
Module239 | 13 | 72 | GO:0048438 | biological_process | floral whorl development | 0.049277641 | 1 | 113 |
Module239 | 13 | 73 | GO:0010016 | biological_process | shoot system morphogenesis | 0.049704516 | 1 | 114 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC217840.3_FG001 | ggps1 | 0.0393 |
AC217840.3_FG001 | bhlh164 | 0.0463 |
AC217840.3_FG001 | GRMZM2G132777 | 0.0442 |
AC217840.3_FG001 | GRMZM5G846097 | 0.0649 |
bhlh164 | AC208023.3_FG001 | 0.0711 |
AC208023.3_FG001 | GRMZM2G089491 | 0.0424 |
AC208023.3_FG001 | GRMZM2G136270 | 0.0434 |
AC208023.3_FG001 | GRMZM2G168119 | 0.0368 |
AC208023.3_FG001 | GRMZM2G304575 | 0.0428 |
GRMZM2G136270 | GRMZM2G049211 | 0.0531 |
GRMZM2G136270 | GRMZM5G826216 | 0.0481 |
GRMZM5G846097 | GRMZM2G014419 | 0.0357 |