This page contains information for Module244, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G004528 | Module244 | AT2G22240 | MIPS2 | myo-inositol-1-phosphate synthase 2 | myo-inositol-1-phosphate synthase 2 | ||
GRMZM2G091456 | Module244 | AT1G58440 | XF1 | FAD/NAD(P)-binding oxidoreductase family protein | |||
GRMZM2G105787 | Module244 | AT1G58440 | XF1 | FAD/NAD(P)-binding oxidoreductase family protein | |||
GRMZM2G107665 | Module244 | AT4G12130 | AT4G12130 | Glycine cleavage T-protein family | |||
GRMZM2G126812 | Module244 | AT1G42430 | AT1G42430 | ||||
GRMZM2G110345 | Module244 | AT1G42430 | AT1G42430 | ||||
GRMZM2G155242 | lpa1 | Module244 | AT2G22240 | MIPS2 | myo-inositol-1-phosphate synthase 2 | myo-inositol-1-phosphate synthase 2 | |
GRMZM2G006480 | Module244 | AT5G53970 | TAT7 | tyrosine aminotransferase 7 | Tyrosine transaminase family protein | ||
GRMZM2G078650 | Module244 | AT1G49740 | AT1G49740 | PLC-like phosphodiesterases superfamily protein | |||
GRMZM2G139689 | Module244 | AT5G14760 | AO | L-aspartate oxidase | L-aspartate oxidase | ||
GRMZM2G379002 | Module244 | AT4G17740 | AT4G17740 | Peptidase S41 family protein | |||
GRMZM2G082034 | Module244 | AT5G18670 | BMY3 | beta-amylase 3 | beta-amylase 3 | ||
GRMZM5G813886 | Module244 | AT5G06530 | ABCG22 | ATP-binding cassette G22 | ABC-2 type transporter family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module244 | 13 | 1 | GO:0004506 | molecular_function | squalene monooxygenase activity | 4.09E-07 | 2 | 2 |
Module244 | 13 | 2 | GO:0004512 | molecular_function | inositol-3-phosphate synthase activity | 4.08E-06 | 2 | 5 |
Module244 | 13 | 3 | GO:0006021 | biological_process | inositol biosynthetic process | 9.07E-06 | 2 | 6 |
Module244 | 13 | 4 | GO:0046165 | biological_process | alcohol biosynthetic process | 1.28E-05 | 3 | 59 |
Module244 | 13 | 5 | GO:0006020 | biological_process | inositol metabolic process | 1.69E-05 | 2 | 8 |
Module244 | 13 | 6 | GO:0006658 | biological_process | phosphatidylserine metabolic process | 1.69E-05 | 2 | 8 |
Module244 | 13 | 7 | GO:0006659 | biological_process | phosphatidylserine biosynthetic process | 1.69E-05 | 2 | 8 |
Module244 | 13 | 8 | GO:0010264 | biological_process | myo-inositol hexakisphosphate biosynthetic process | 2.72E-05 | 2 | 10 |
Module244 | 13 | 9 | GO:0033517 | biological_process | myo-inositol hexakisphosphate metabolic process | 2.72E-05 | 2 | 10 |
Module244 | 13 | 10 | GO:0032958 | biological_process | inositol phosphate biosynthetic process | 3.32E-05 | 2 | 11 |
Module244 | 13 | 11 | GO:1901617 | biological_process | organic hydroxy compound biosynthetic process | 5.04E-05 | 3 | 93 |
Module244 | 13 | 12 | GO:0016872 | molecular_function | intramolecular lyase activity | 5.53E-05 | 2 | 17 |
Module244 | 13 | 13 | GO:0052646 | biological_process | alditol phosphate metabolic process | 6.32E-05 | 2 | 15 |
Module244 | 13 | 14 | GO:0046173 | biological_process | polyol biosynthetic process | 0.000102804 | 2 | 19 |
Module244 | 13 | 15 | GO:0043647 | biological_process | inositol phosphate metabolic process | 0.000114176 | 2 | 20 |
Module244 | 13 | 16 | GO:0006066 | biological_process | alcohol metabolic process | 0.000118887 | 3 | 124 |
Module244 | 13 | 17 | GO:0051607 | biological_process | defense response to virus | 0.00016556 | 2 | 24 |
Module244 | 13 | 18 | GO:1901615 | biological_process | organic hydroxy compound metabolic process | 0.000291766 | 3 | 168 |
Module244 | 13 | 19 | GO:0016709 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 0.000298854 | 2 | 39 |
Module244 | 13 | 20 | GO:0006520 | biological_process | cellular amino acid metabolic process | 0.000310899 | 4 | 441 |
Module244 | 13 | 21 | GO:0002252 | biological_process | immune effector process | 0.000375895 | 2 | 36 |
Module244 | 13 | 22 | GO:0042398 | biological_process | cellular modified amino acid biosynthetic process | 0.000464566 | 2 | 40 |
Module244 | 13 | 23 | GO:0044281 | biological_process | small molecule metabolic process | 0.000495718 | 6 | 1482 |
Module244 | 13 | 24 | GO:0009615 | biological_process | response to virus | 0.000641836 | 2 | 47 |
Module244 | 13 | 25 | GO:0019751 | biological_process | polyol metabolic process | 0.000669444 | 2 | 48 |
Module244 | 13 | 26 | GO:0046474 | biological_process | glycerophospholipid biosynthetic process | 0.000785552 | 2 | 52 |
Module244 | 13 | 27 | GO:0003824 | molecular_function | catalytic activity | 0.000848588 | 11 | 8627 |
Module244 | 13 | 28 | GO:0090407 | biological_process | organophosphate biosynthetic process | 0.000858511 | 3 | 243 |
Module244 | 13 | 29 | GO:0042542 | biological_process | response to hydrogen peroxide | 0.001010479 | 2 | 59 |
Module244 | 13 | 30 | GO:1901605 | biological_process | alpha-amino acid metabolic process | 0.001177432 | 3 | 271 |
Module244 | 13 | 31 | GO:0009644 | biological_process | response to high light intensity | 0.001187957 | 2 | 64 |
Module244 | 13 | 32 | GO:0045017 | biological_process | glycerolipid biosynthetic process | 0.001262846 | 2 | 66 |
Module244 | 13 | 33 | GO:0004047 | molecular_function | aminomethyltransferase activity | 0.001340727 | 1 | 2 |
Module244 | 13 | 34 | GO:0008654 | biological_process | phospholipid biosynthetic process | 0.001500802 | 2 | 72 |
Module244 | 13 | 35 | GO:0006575 | biological_process | cellular modified amino acid metabolic process | 0.001542391 | 2 | 73 |
Module244 | 13 | 36 | GO:0009642 | biological_process | response to light intensity | 0.00275868 | 2 | 98 |
Module244 | 13 | 37 | GO:0044710 | biological_process | single-organism metabolic process | 0.002786726 | 8 | 3802 |
Module244 | 13 | 38 | GO:0050660 | molecular_function | flavin adenine dinucleotide binding | 0.003028847 | 2 | 125 |
Module244 | 13 | 39 | GO:0010035 | biological_process | response to inorganic substance | 0.003309985 | 4 | 829 |
Module244 | 13 | 40 | GO:0008610 | biological_process | lipid biosynthetic process | 0.003313602 | 3 | 389 |
Module244 | 13 | 41 | GO:0006629 | biological_process | lipid metabolic process | 0.003398232 | 4 | 835 |
Module244 | 13 | 42 | GO:0048037 | molecular_function | cofactor binding | 0.004344114 | 3 | 521 |
Module244 | 13 | 43 | GO:0000302 | biological_process | response to reactive oxygen species | 0.004514071 | 2 | 126 |
Module244 | 13 | 44 | GO:1901700 | biological_process | response to oxygen-containing compound | 0.004643684 | 4 | 910 |
Module244 | 13 | 45 | GO:0006650 | biological_process | glycerophospholipid metabolic process | 0.004726147 | 2 | 129 |
Module244 | 13 | 46 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.004792802 | 4 | 918 |
Module244 | 13 | 47 | GO:0010148 | biological_process | transpiration | 0.004888517 | 1 | 6 |
Module244 | 13 | 48 | GO:0043436 | biological_process | oxoacid metabolic process | 0.005100902 | 4 | 934 |
Module244 | 13 | 49 | GO:0006082 | biological_process | organic acid metabolic process | 0.00514035 | 4 | 936 |
Module244 | 13 | 50 | GO:0016641 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | 0.005353111 | 1 | 8 |
Module244 | 13 | 51 | GO:0050832 | biological_process | defense response to fungus | 0.005697714 | 2 | 142 |
Module244 | 13 | 52 | GO:0006546 | biological_process | glycine catabolic process | 0.005701155 | 1 | 7 |
Module244 | 13 | 53 | GO:0046486 | biological_process | glycerolipid metabolic process | 0.006255864 | 2 | 149 |
Module244 | 13 | 54 | GO:0009408 | biological_process | response to heat | 0.006923351 | 2 | 157 |
Module244 | 13 | 55 | GO:0006644 | biological_process | phospholipid metabolic process | 0.00700899 | 2 | 158 |
Module244 | 13 | 56 | GO:0009071 | biological_process | serine family amino acid catabolic process | 0.00732462 | 1 | 9 |
Module244 | 13 | 57 | GO:0009435 | biological_process | NAD biosynthetic process | 0.008135449 | 1 | 10 |
Module244 | 13 | 58 | GO:0019637 | biological_process | organophosphate metabolic process | 0.008298078 | 3 | 540 |
Module244 | 13 | 59 | GO:0034637 | biological_process | cellular carbohydrate biosynthetic process | 0.008538827 | 2 | 175 |
Module244 | 13 | 60 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.009237609 | 5 | 1779 |
Module244 | 13 | 61 | GO:0044283 | biological_process | small molecule biosynthetic process | 0.009308976 | 3 | 563 |
Module244 | 13 | 62 | GO:0016638 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors | 0.009350834 | 1 | 14 |
Module244 | 13 | 63 | GO:0004497 | molecular_function | monooxygenase activity | 0.009739625 | 2 | 228 |
Module244 | 13 | 64 | GO:0016161 | molecular_function | beta-amylase activity | 0.010015699 | 1 | 15 |
Module244 | 13 | 65 | GO:0009620 | biological_process | response to fungus | 0.010411073 | 2 | 194 |
Module244 | 13 | 66 | GO:0002376 | biological_process | immune system process | 0.011037208 | 2 | 200 |
Module244 | 13 | 67 | GO:0009793 | biological_process | embryo development ending in seed dormancy | 0.011897694 | 2 | 208 |
Module244 | 13 | 68 | GO:0019359 | biological_process | nicotinamide nucleotide biosynthetic process | 0.01298779 | 1 | 16 |
Module244 | 13 | 69 | GO:0019674 | biological_process | NAD metabolic process | 0.01298779 | 1 | 16 |
Module244 | 13 | 70 | GO:0006544 | biological_process | glycine metabolic process | 0.01298779 | 1 | 16 |
Module244 | 13 | 71 | GO:0016126 | biological_process | sterol biosynthetic process | 0.013794412 | 1 | 17 |
Module244 | 13 | 72 | GO:0006833 | biological_process | water transport | 0.013794412 | 1 | 17 |
Module244 | 13 | 73 | GO:0042044 | biological_process | fluid transport | 0.013794412 | 1 | 17 |
Module244 | 13 | 74 | GO:0016051 | biological_process | carbohydrate biosynthetic process | 0.013939248 | 2 | 226 |
Module244 | 13 | 75 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.014045892 | 4 | 1244 |
Module244 | 13 | 76 | GO:0016853 | molecular_function | isomerase activity | 0.014423927 | 2 | 280 |
Module244 | 13 | 77 | GO:0019363 | biological_process | pyridine nucleotide biosynthetic process | 0.014600435 | 1 | 18 |
Module244 | 13 | 78 | GO:0016160 | molecular_function | amylase activity | 0.014658409 | 1 | 22 |
Module244 | 13 | 79 | GO:0009414 | biological_process | response to water deprivation | 0.015998631 | 2 | 243 |
Module244 | 13 | 80 | GO:0042742 | biological_process | defense response to bacterium | 0.01624914 | 2 | 245 |
Module244 | 13 | 81 | GO:0009415 | biological_process | response to water | 0.017139386 | 2 | 252 |
Module244 | 13 | 82 | GO:0016125 | biological_process | sterol metabolic process | 0.018621573 | 1 | 23 |
Module244 | 13 | 83 | GO:0072525 | biological_process | pyridine-containing compound biosynthetic process | 0.020225847 | 1 | 25 |
Module244 | 13 | 84 | GO:1901137 | biological_process | carbohydrate derivative biosynthetic process | 0.020348037 | 2 | 276 |
Module244 | 13 | 85 | GO:0009790 | biological_process | embryo development | 0.021046429 | 2 | 281 |
Module244 | 13 | 86 | GO:0048316 | biological_process | seed development | 0.02132863 | 2 | 283 |
Module244 | 13 | 87 | GO:0009628 | biological_process | response to abiotic stimulus | 0.022450488 | 4 | 1427 |
Module244 | 13 | 88 | GO:0016226 | biological_process | iron-sulfur cluster assembly | 0.022627789 | 1 | 28 |
Module244 | 13 | 89 | GO:0031163 | biological_process | metallo-sulfur cluster assembly | 0.022627789 | 1 | 28 |
Module244 | 13 | 90 | GO:0009617 | biological_process | response to bacterium | 0.023644039 | 2 | 299 |
Module244 | 13 | 91 | GO:0010154 | biological_process | fruit development | 0.024089496 | 2 | 302 |
Module244 | 13 | 92 | GO:0050662 | molecular_function | coenzyme binding | 0.024146761 | 2 | 368 |
Module244 | 13 | 93 | GO:0044262 | biological_process | cellular carbohydrate metabolic process | 0.02668 | 2 | 319 |
Module244 | 13 | 94 | GO:0006694 | biological_process | steroid biosynthetic process | 0.028211515 | 1 | 35 |
Module244 | 13 | 95 | GO:0016705 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 0.028596868 | 2 | 403 |
Module244 | 13 | 96 | GO:0016769 | molecular_function | transferase activity, transferring nitrogenous groups | 0.031729994 | 1 | 48 |
Module244 | 13 | 97 | GO:0008483 | molecular_function | transaminase activity | 0.031729994 | 1 | 48 |
Module244 | 13 | 98 | GO:0008081 | molecular_function | phosphoric diester hydrolase activity | 0.034332392 | 1 | 52 |
Module244 | 13 | 99 | GO:0008202 | biological_process | steroid metabolic process | 0.035347976 | 1 | 44 |
Module244 | 13 | 100 | GO:0009069 | biological_process | serine family amino acid metabolic process | 0.036137968 | 1 | 45 |
Module244 | 13 | 101 | GO:0000272 | biological_process | polysaccharide catabolic process | 0.036927372 | 1 | 46 |
Module244 | 13 | 102 | GO:0005975 | biological_process | carbohydrate metabolic process | 0.037997335 | 3 | 954 |
Module244 | 13 | 103 | GO:0042221 | biological_process | response to chemical | 0.038640835 | 4 | 1681 |
Module244 | 13 | 104 | GO:0006979 | biological_process | response to oxidative stress | 0.038841328 | 2 | 391 |
Module244 | 13 | 105 | GO:1901606 | biological_process | alpha-amino acid catabolic process | 0.039292058 | 1 | 49 |
Module244 | 13 | 106 | GO:0098542 | biological_process | defense response to other organism | 0.039753817 | 2 | 396 |
Module244 | 13 | 107 | GO:0009063 | biological_process | cellular amino acid catabolic process | 0.041651465 | 1 | 52 |
Module244 | 13 | 108 | GO:0005759 | cellular_component | mitochondrial matrix | 0.042679225 | 1 | 51 |
Module244 | 13 | 109 | GO:0044699 | biological_process | single-organism process | 0.043887028 | 9 | 7015 |
Module244 | 13 | 110 | GO:0009266 | biological_process | response to temperature stimulus | 0.049530852 | 2 | 447 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G004528 | GRMZM2G091456 | 0.049 |
GRMZM2G004528 | GRMZM2G107665 | 0.0411 |
GRMZM2G004528 | lpa1 | 0.1071 |
GRMZM2G091456 | GRMZM2G105787 | 0.061 |
GRMZM2G126812 | GRMZM2G110345 | 0.1159 |
GRMZM2G126812 | lpa1 | 0.046 |
lpa1 | GRMZM2G006480 | 0.0363 |
lpa1 | GRMZM2G078650 | 0.042 |
lpa1 | GRMZM2G139689 | 0.0368 |
lpa1 | GRMZM5G813886 | 0.0371 |
GRMZM2G139689 | GRMZM2G379002 | 0.0424 |
GRMZM2G379002 | GRMZM2G082034 | 0.0352 |