This page contains information for Module247, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G016150 | ohp1 | Module247 | AT3G54620 | BZIP25 | basic leucine zipper 25 | basic leucine zipper 25 | bZIP |
GRMZM2G003640 | Module247 | AT3G23610 | DSPTP1 | dual specificity protein phosphatase 1 | dual specificity protein phosphatase 1 | ||
GRMZM2G019446 | bzip41 | Module247 | AT3G54620 | BZIP25 | basic leucine zipper 25 | basic leucine zipper 25 | bZIP |
GRMZM2G046191 | tsah1 | Module247 | AT3G54640 | TSA1 | tryptophan synthase alpha chain | tryptophan synthase alpha chain | |
GRMZM2G077718 | Module247 | ||||||
GRMZM2G079127 | Module247 | AT1G33110 | AT1G33110 | MATE efflux family protein | |||
GRMZM2G008864 | Module247 | AT5G43430 | ETFBETA | electron transfer flavoprotein beta | electron transfer flavoprotein beta | ||
GRMZM2G105233 | Module247 | ||||||
GRMZM2G448927 | Module247 | AT5G56740 | HAG2 | histone acetyltransferase of the GNAT family 2 | histone acetyltransferase of the GNAT family 2 | ||
GRMZM5G814279 | mads74 | Module247 | AT2G22540 | SVP | SHORT VEGETATIVE PHASE | K-box region and MADS-box transcription factor family protein | MADS |
GRMZM5G881498 | Module247 | ||||||
GRMZM2G133055 | Module247 | ||||||
GRMZM6G949474 | Module247 | AT4G12730 | FLA2 | FASCICLIN-like arabinogalactan 2 | FASCICLIN-like arabinogalactan 2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module247 | 13 | 1 | GO:0090079 | molecular_function | translation regulator activity, nucleic acid binding | 0.001705964 | 1 | 4 |
Module247 | 13 | 2 | GO:0045182 | molecular_function | translation regulator activity | 0.001705964 | 1 | 4 |
Module247 | 13 | 3 | GO:0030371 | molecular_function | translation repressor activity | 0.001705964 | 1 | 4 |
Module247 | 13 | 4 | GO:0000900 | molecular_function | translation repressor activity, nucleic acid binding | 0.001705964 | 1 | 4 |
Module247 | 13 | 5 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.00221794 | 3 | 683 |
Module247 | 13 | 6 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.002227293 | 3 | 684 |
Module247 | 13 | 7 | GO:0006552 | biological_process | leucine catabolic process | 0.002594898 | 1 | 5 |
Module247 | 13 | 8 | GO:0009083 | biological_process | branched-chain amino acid catabolic process | 0.00363124 | 1 | 7 |
Module247 | 13 | 9 | GO:0004834 | molecular_function | tryptophan synthase activity | 0.004260234 | 1 | 10 |
Module247 | 13 | 10 | GO:0046483 | biological_process | heterocycle metabolic process | 0.006179944 | 5 | 2866 |
Module247 | 13 | 11 | GO:0006551 | biological_process | leucine metabolic process | 0.006218057 | 1 | 12 |
Module247 | 13 | 12 | GO:0010076 | biological_process | maintenance of floral meristem identity | 0.006218057 | 1 | 12 |
Module247 | 13 | 13 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.006615365 | 5 | 2909 |
Module247 | 13 | 14 | GO:0010582 | biological_process | floral meristem determinacy | 0.007251171 | 1 | 14 |
Module247 | 13 | 15 | GO:0010077 | biological_process | maintenance of inflorescence meristem identity | 0.007251171 | 1 | 14 |
Module247 | 13 | 16 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.007601395 | 5 | 2999 |
Module247 | 13 | 17 | GO:0010022 | biological_process | meristem determinacy | 0.007767383 | 1 | 15 |
Module247 | 13 | 18 | GO:1901605 | biological_process | alpha-amino acid metabolic process | 0.007915219 | 2 | 271 |
Module247 | 13 | 19 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.007998521 | 4 | 1804 |
Module247 | 13 | 20 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.00821069 | 4 | 1817 |
Module247 | 13 | 21 | GO:0052544 | biological_process | defense response by callose deposition in cell wall | 0.008283365 | 1 | 16 |
Module247 | 13 | 22 | GO:0046219 | biological_process | indolalkylamine biosynthetic process | 0.008283365 | 1 | 16 |
Module247 | 13 | 23 | GO:0000162 | biological_process | tryptophan biosynthetic process | 0.008283365 | 1 | 16 |
Module247 | 13 | 24 | GO:0052482 | biological_process | defense response by cell wall thickening | 0.008283365 | 1 | 16 |
Module247 | 13 | 25 | GO:0008138 | molecular_function | protein tyrosine/serine/threonine phosphatase activity | 0.008504901 | 1 | 20 |
Module247 | 13 | 26 | GO:0015996 | biological_process | chlorophyll catabolic process | 0.008799116 | 1 | 17 |
Module247 | 13 | 27 | GO:0052543 | biological_process | callose deposition in cell wall | 0.009314638 | 1 | 18 |
Module247 | 13 | 28 | GO:0046149 | biological_process | pigment catabolic process | 0.009314638 | 1 | 18 |
Module247 | 13 | 29 | GO:0048510 | biological_process | regulation of timing of transition from vegetative to reproductive phase | 0.009314638 | 1 | 18 |
Module247 | 13 | 30 | GO:0052542 | biological_process | defense response by callose deposition | 0.00982993 | 1 | 19 |
Module247 | 13 | 31 | GO:0052386 | biological_process | cell wall thickening | 0.00982993 | 1 | 19 |
Module247 | 13 | 32 | GO:0048506 | biological_process | regulation of timing of meristematic phase transition | 0.00982993 | 1 | 19 |
Module247 | 13 | 33 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.010107858 | 4 | 1924 |
Module247 | 13 | 34 | GO:0004725 | molecular_function | protein tyrosine phosphatase activity | 0.01019842 | 1 | 24 |
Module247 | 13 | 35 | GO:0051187 | biological_process | cofactor catabolic process | 0.010344992 | 1 | 20 |
Module247 | 13 | 36 | GO:0033015 | biological_process | tetrapyrrole catabolic process | 0.010344992 | 1 | 20 |
Module247 | 13 | 37 | GO:0035335 | biological_process | peptidyl-tyrosine dephosphorylation | 0.010344992 | 1 | 20 |
Module247 | 13 | 38 | GO:0006787 | biological_process | porphyrin-containing compound catabolic process | 0.010344992 | 1 | 20 |
Module247 | 13 | 39 | GO:0040034 | biological_process | regulation of development, heterochronic | 0.010344992 | 1 | 20 |
Module247 | 13 | 40 | GO:0052545 | biological_process | callose localization | 0.0118888 | 1 | 23 |
Module247 | 13 | 41 | GO:0033037 | biological_process | polysaccharide localization | 0.0118888 | 1 | 23 |
Module247 | 13 | 42 | GO:0006568 | biological_process | tryptophan metabolic process | 0.012916859 | 1 | 25 |
Module247 | 13 | 43 | GO:0006586 | biological_process | indolalkylamine metabolic process | 0.012916859 | 1 | 25 |
Module247 | 13 | 44 | GO:0042435 | biological_process | indole-containing compound biosynthetic process | 0.014970226 | 1 | 29 |
Module247 | 13 | 45 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.015007378 | 2 | 460 |
Module247 | 13 | 46 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.016138891 | 5 | 3545 |
Module247 | 13 | 47 | GO:0010074 | biological_process | maintenance of meristem identity | 0.016507847 | 1 | 32 |
Module247 | 13 | 48 | GO:0019827 | biological_process | stem cell population maintenance | 0.018554809 | 1 | 36 |
Module247 | 13 | 49 | GO:0098727 | biological_process | maintenance of cell number | 0.018554809 | 1 | 36 |
Module247 | 13 | 50 | GO:0009081 | biological_process | branched-chain amino acid metabolic process | 0.019065978 | 1 | 37 |
Module247 | 13 | 51 | GO:0006520 | biological_process | cellular amino acid metabolic process | 0.020118625 | 2 | 441 |
Module247 | 13 | 52 | GO:0015238 | molecular_function | drug transmembrane transporter activity | 0.02030756 | 1 | 48 |
Module247 | 13 | 53 | GO:0009910 | biological_process | negative regulation of flower development | 0.021108374 | 1 | 41 |
Module247 | 13 | 54 | GO:0090484 | molecular_function | drug transporter activity | 0.021145979 | 1 | 50 |
Module247 | 13 | 55 | GO:0042401 | biological_process | cellular biogenic amine biosynthetic process | 0.022637778 | 1 | 44 |
Module247 | 13 | 56 | GO:0009309 | biological_process | amine biosynthetic process | 0.022637778 | 1 | 44 |
Module247 | 13 | 57 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.022953833 | 3 | 1293 |
Module247 | 13 | 58 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.022953833 | 3 | 1293 |
Module247 | 13 | 59 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.022953833 | 3 | 1293 |
Module247 | 13 | 60 | GO:0006855 | biological_process | drug transmembrane transport | 0.023147124 | 1 | 45 |
Module247 | 13 | 61 | GO:2000242 | biological_process | negative regulation of reproductive process | 0.023147124 | 1 | 45 |
Module247 | 13 | 62 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.0234841 | 3 | 1304 |
Module247 | 13 | 63 | GO:0042430 | biological_process | indole-containing compound metabolic process | 0.023656243 | 1 | 46 |
Module247 | 13 | 64 | GO:0015893 | biological_process | drug transport | 0.023656243 | 1 | 46 |
Module247 | 13 | 65 | GO:0042493 | biological_process | response to drug | 0.024165134 | 1 | 47 |
Module247 | 13 | 66 | GO:0015994 | biological_process | chlorophyll metabolic process | 0.024165134 | 1 | 47 |
Module247 | 13 | 67 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.024231589 | 5 | 3887 |
Module247 | 13 | 68 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.024916067 | 3 | 1333 |
Module247 | 13 | 69 | GO:1901606 | biological_process | alpha-amino acid catabolic process | 0.025182234 | 1 | 49 |
Module247 | 13 | 70 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.026608988 | 4 | 2526 |
Module247 | 13 | 71 | GO:0009063 | biological_process | cellular amino acid catabolic process | 0.02670618 | 1 | 52 |
Module247 | 13 | 72 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.027025111 | 3 | 1374 |
Module247 | 13 | 73 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.027025111 | 3 | 1374 |
Module247 | 13 | 74 | GO:0009073 | biological_process | aromatic amino acid family biosynthetic process | 0.027721009 | 1 | 54 |
Module247 | 13 | 75 | GO:0048581 | biological_process | negative regulation of post-embryonic development | 0.027721009 | 1 | 54 |
Module247 | 13 | 76 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.028794994 | 3 | 1407 |
Module247 | 13 | 77 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.028904342 | 3 | 1409 |
Module247 | 13 | 78 | GO:0010468 | biological_process | regulation of gene expression | 0.029178755 | 3 | 1414 |
Module247 | 13 | 79 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.029178755 | 3 | 1414 |
Module247 | 13 | 80 | GO:0006351 | biological_process | transcription, DNA-templated | 0.029178755 | 3 | 1414 |
Module247 | 13 | 81 | GO:0032774 | biological_process | RNA biosynthetic process | 0.029454659 | 3 | 1419 |
Module247 | 13 | 82 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.029620917 | 3 | 1422 |
Module247 | 13 | 83 | GO:0051241 | biological_process | negative regulation of multicellular organismal process | 0.030254115 | 1 | 59 |
Module247 | 13 | 84 | GO:0016836 | molecular_function | hydro-lyase activity | 0.03074368 | 1 | 73 |
Module247 | 13 | 85 | GO:0042803 | molecular_function | protein homodimerization activity | 0.033234121 | 1 | 79 |
Module247 | 13 | 86 | GO:0048509 | biological_process | regulation of meristem development | 0.033286374 | 1 | 65 |
Module247 | 13 | 87 | GO:0010073 | biological_process | meristem maintenance | 0.033790959 | 1 | 66 |
Module247 | 13 | 88 | GO:0051093 | biological_process | negative regulation of developmental process | 0.034295319 | 1 | 67 |
Module247 | 13 | 89 | GO:0042545 | biological_process | cell wall modification | 0.034799453 | 1 | 68 |
Module247 | 13 | 90 | GO:0046700 | biological_process | heterocycle catabolic process | 0.035303361 | 1 | 69 |
Module247 | 13 | 91 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.035779789 | 3 | 1527 |
Module247 | 13 | 92 | GO:0044270 | biological_process | cellular nitrogen compound catabolic process | 0.035807044 | 1 | 70 |
Module247 | 13 | 93 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.036089611 | 3 | 1532 |
Module247 | 13 | 94 | GO:0003677 | molecular_function | DNA binding | 0.037444524 | 3 | 1891 |
Module247 | 13 | 95 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.037470753 | 3 | 1554 |
Module247 | 13 | 96 | GO:0006778 | biological_process | porphyrin-containing compound metabolic process | 0.037819522 | 1 | 74 |
Module247 | 13 | 97 | GO:0006576 | biological_process | cellular biogenic amine metabolic process | 0.039326517 | 1 | 77 |
Module247 | 13 | 98 | GO:0033013 | biological_process | tetrapyrrole metabolic process | 0.040330056 | 1 | 79 |
Module247 | 13 | 99 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.040386922 | 3 | 1599 |
Module247 | 13 | 100 | GO:0009072 | biological_process | aromatic amino acid family metabolic process | 0.040831488 | 1 | 80 |
Module247 | 13 | 101 | GO:0015297 | molecular_function | antiporter activity | 0.04231887 | 1 | 101 |
Module247 | 13 | 102 | GO:0016054 | biological_process | organic acid catabolic process | 0.042834973 | 1 | 84 |
Module247 | 13 | 103 | GO:0046395 | biological_process | carboxylic acid catabolic process | 0.042834973 | 1 | 84 |
Module247 | 13 | 104 | GO:0019439 | biological_process | aromatic compound catabolic process | 0.043835369 | 1 | 86 |
Module247 | 13 | 105 | GO:0044106 | biological_process | cellular amine metabolic process | 0.044834869 | 1 | 88 |
Module247 | 13 | 106 | GO:1901361 | biological_process | organic cyclic compound catabolic process | 0.047827998 | 1 | 94 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
ohp1 | GRMZM2G003640 | 0.0368 |
ohp1 | bzip41 | 0.0463 |
ohp1 | tsah1 | 0.075 |
ohp1 | GRMZM2G077718 | 0.0531 |
ohp1 | GRMZM2G448927 | 0.0468 |
ohp1 | GRMZM5G881498 | 0.0378 |
tsah1 | GRMZM2G079127 | 0.0363 |
GRMZM2G077718 | GRMZM2G105233 | 0.0445 |
GRMZM2G079127 | GRMZM2G008864 | 0.0455 |
GRMZM2G079127 | mads74 | 0.0432 |
GRMZM5G881498 | GRMZM2G133055 | 0.08 |
GRMZM2G133055 | GRMZM6G949474 | 0.0422 |