This page contains information for Module253, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G041127 | hb54 | Module253 | AT4G40060 | HB16 | homeobox protein 16 | homeobox protein 16 | HB |
GRMZM2G056600 | hb120 | Module253 | AT4G40060 | HB16 | homeobox protein 16 | homeobox protein 16 | HB |
GRMZM2G070279 | Module253 | AT3G59710 | AT3G59710 | NAD(P)-binding Rossmann-fold superfamily protein | |||
GRMZM2G089836 | ivr2 | Module253 | AT1G62660 | AT1G62660 | Glycosyl hydrolases family 32 protein | ||
GRMZM2G101000 | Module253 | AT2G01900 | AT2G01900 | DNAse I-like superfamily protein | |||
GRMZM2G129018 | Module253 | AT5G10930 | CIPK5 | CBL-interacting protein kinase 5 | CBL-interacting protein kinase 5 | ||
GRMZM2G129585 | Module253 | AT3G61460 | BRH1 | brassinosteroid-responsive RING-H2 | brassinosteroid-responsive RING-H2 | ||
GRMZM2G330049 | Module253 | AT5G10930 | CIPK5 | CBL-interacting protein kinase 5 | CBL-interacting protein kinase 5 | ||
GRMZM2G412601 | Module253 | AT4G30960 | SIP3 | SOS3-interacting protein 3 | SOS3-interacting protein 3 | ||
GRMZM2G416156 | Module253 | AT5G20700 | AT5G20700 | Protein of unknown function (DUF581) | |||
GRMZM2G425482 | Module253 | AT1G19200 | AT1G19200 | Protein of unknown function (DUF581) | |||
GRMZM2G429940 | Module253 | AT4G30960 | SIP3 | SOS3-interacting protein 3 | SOS3-interacting protein 3 | ||
GRMZM2G061202 | Module253 | AT2G37730 | AT2G37730 | Protein of unknown function (DUF604) |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module253 | 13 | 1 | GO:0042538 | biological_process | hyperosmotic salinity response | 5.02E-06 | 3 | 54 |
Module253 | 13 | 2 | GO:0006972 | biological_process | hyperosmotic response | 9.66E-06 | 3 | 67 |
Module253 | 13 | 3 | GO:0010540 | biological_process | basipetal auxin transport | 2.17E-05 | 2 | 11 |
Module253 | 13 | 4 | GO:0007165 | biological_process | signal transduction | 3.86E-05 | 5 | 697 |
Module253 | 13 | 5 | GO:0023052 | biological_process | signaling | 4.11E-05 | 5 | 706 |
Module253 | 13 | 6 | GO:0044700 | biological_process | single organism signaling | 4.11E-05 | 5 | 706 |
Module253 | 13 | 7 | GO:0000976 | molecular_function | transcription regulatory region sequence-specific DNA binding | 5.06E-05 | 2 | 20 |
Module253 | 13 | 8 | GO:1990837 | molecular_function | sequence-specific double-stranded DNA binding | 7.34E-05 | 2 | 24 |
Module253 | 13 | 9 | GO:0044212 | molecular_function | transcription regulatory region DNA binding | 0.000100401 | 2 | 28 |
Module253 | 13 | 10 | GO:0001067 | molecular_function | regulatory region nucleic acid binding | 0.000107807 | 2 | 29 |
Module253 | 13 | 11 | GO:0000975 | molecular_function | regulatory region DNA binding | 0.000107807 | 2 | 29 |
Module253 | 13 | 12 | GO:0007154 | biological_process | cell communication | 0.000107991 | 5 | 863 |
Module253 | 13 | 13 | GO:0009926 | biological_process | auxin polar transport | 0.000233235 | 2 | 35 |
Module253 | 13 | 14 | GO:0060918 | biological_process | auxin transport | 0.000386729 | 2 | 45 |
Module253 | 13 | 15 | GO:0009914 | biological_process | hormone transport | 0.000404168 | 2 | 46 |
Module253 | 13 | 16 | GO:0051716 | biological_process | cellular response to stimulus | 0.00042036 | 5 | 1149 |
Module253 | 13 | 17 | GO:0009414 | biological_process | response to water deprivation | 0.000448909 | 3 | 243 |
Module253 | 13 | 18 | GO:0003690 | molecular_function | double-stranded DNA binding | 0.000465868 | 2 | 60 |
Module253 | 13 | 19 | GO:0009415 | biological_process | response to water | 0.000499363 | 3 | 252 |
Module253 | 13 | 20 | GO:0004674 | molecular_function | protein serine/threonine kinase activity | 0.000757836 | 4 | 858 |
Module253 | 13 | 21 | GO:0050738 | molecular_function | fructosyltransferase activity | 0.001097026 | 1 | 2 |
Module253 | 13 | 22 | GO:0051669 | molecular_function | fructan beta-fructosidase activity | 0.001097026 | 1 | 2 |
Module253 | 13 | 23 | GO:0050306 | molecular_function | sucrose 1F-fructosyltransferase activity | 0.001097026 | 1 | 2 |
Module253 | 13 | 24 | GO:0050794 | biological_process | regulation of cellular process | 0.001558094 | 6 | 2381 |
Module253 | 13 | 25 | GO:0016310 | biological_process | phosphorylation | 0.001626566 | 5 | 1537 |
Module253 | 13 | 26 | GO:0010817 | biological_process | regulation of hormone levels | 0.001972791 | 2 | 102 |
Module253 | 13 | 27 | GO:0004672 | molecular_function | protein kinase activity | 0.002267594 | 4 | 1149 |
Module253 | 13 | 28 | GO:0009651 | biological_process | response to salt stress | 0.00309991 | 3 | 474 |
Module253 | 13 | 29 | GO:0030308 | biological_process | negative regulation of cell growth | 0.003335307 | 1 | 5 |
Module253 | 13 | 30 | GO:0050789 | biological_process | regulation of biological process | 0.003412403 | 6 | 2751 |
Module253 | 13 | 31 | GO:0050832 | biological_process | defense response to fungus | 0.003781296 | 2 | 142 |
Module253 | 13 | 32 | GO:0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor | 0.00387826 | 4 | 1329 |
Module253 | 13 | 33 | GO:0006970 | biological_process | response to osmotic stress | 0.0039661 | 3 | 517 |
Module253 | 13 | 34 | GO:0065007 | biological_process | biological regulation | 0.00474685 | 6 | 2926 |
Module253 | 13 | 35 | GO:0006796 | biological_process | phosphate-containing compound metabolic process | 0.005234031 | 5 | 1990 |
Module253 | 13 | 36 | GO:0006468 | biological_process | protein phosphorylation | 0.005306 | 4 | 1190 |
Module253 | 13 | 37 | GO:0006793 | biological_process | phosphorus metabolic process | 0.005375937 | 5 | 2002 |
Module253 | 13 | 38 | GO:0016301 | molecular_function | kinase activity | 0.005435959 | 4 | 1458 |
Module253 | 13 | 39 | GO:0006950 | biological_process | response to stress | 0.006168358 | 5 | 2065 |
Module253 | 13 | 40 | GO:0009620 | biological_process | response to fungus | 0.006944711 | 2 | 194 |
Module253 | 13 | 41 | GO:0004575 | molecular_function | sucrose alpha-glucosidase activity | 0.007656745 | 1 | 14 |
Module253 | 13 | 42 | GO:0004564 | molecular_function | beta-fructofuranosidase activity | 0.008201656 | 1 | 15 |
Module253 | 13 | 43 | GO:0090599 | molecular_function | alpha-glucosidase activity | 0.008201656 | 1 | 15 |
Module253 | 13 | 44 | GO:0045926 | biological_process | negative regulation of growth | 0.009313949 | 1 | 14 |
Module253 | 13 | 45 | GO:0001101 | biological_process | response to acid chemical | 0.0094831 | 3 | 706 |
Module253 | 13 | 46 | GO:0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups | 0.009840518 | 4 | 1720 |
Module253 | 13 | 47 | GO:0009628 | biological_process | response to abiotic stimulus | 0.010186473 | 4 | 1427 |
Module253 | 13 | 48 | GO:0048510 | biological_process | regulation of timing of transition from vegetative to reproductive phase | 0.011960875 | 1 | 18 |
Module253 | 13 | 49 | GO:0006814 | biological_process | sodium ion transport | 0.012621623 | 1 | 19 |
Module253 | 13 | 50 | GO:0048506 | biological_process | regulation of timing of meristematic phase transition | 0.012621623 | 1 | 19 |
Module253 | 13 | 51 | GO:0040034 | biological_process | regulation of development, heterochronic | 0.013281979 | 1 | 20 |
Module253 | 13 | 52 | GO:0010035 | biological_process | response to inorganic substance | 0.01472755 | 3 | 829 |
Module253 | 13 | 53 | GO:0015926 | molecular_function | glucosidase activity | 0.016884132 | 1 | 31 |
Module253 | 13 | 54 | GO:0046856 | biological_process | phosphatidylinositol dephosphorylation | 0.017893487 | 1 | 27 |
Module253 | 13 | 55 | GO:0046839 | biological_process | phospholipid dephosphorylation | 0.017893487 | 1 | 27 |
Module253 | 13 | 56 | GO:0009788 | biological_process | negative regulation of abscisic acid-activated signaling pathway | 0.017893487 | 1 | 27 |
Module253 | 13 | 57 | GO:1901420 | biological_process | negative regulation of response to alcohol | 0.017893487 | 1 | 27 |
Module253 | 13 | 58 | GO:1901700 | biological_process | response to oxygen-containing compound | 0.01894996 | 3 | 910 |
Module253 | 13 | 59 | GO:0016740 | molecular_function | transferase activity | 0.020450779 | 5 | 3316 |
Module253 | 13 | 60 | GO:0036211 | biological_process | protein modification process | 0.020703037 | 4 | 1748 |
Module253 | 13 | 61 | GO:0006464 | biological_process | cellular protein modification process | 0.020703037 | 4 | 1748 |
Module253 | 13 | 62 | GO:1901265 | molecular_function | nucleoside phosphate binding | 0.02186005 | 5 | 3369 |
Module253 | 13 | 63 | GO:0000166 | molecular_function | nucleotide binding | 0.02186005 | 5 | 3369 |
Module253 | 13 | 64 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.022701031 | 7 | 6456 |
Module253 | 13 | 65 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.022806111 | 7 | 6461 |
Module253 | 13 | 66 | GO:0001558 | biological_process | regulation of cell growth | 0.023140315 | 1 | 35 |
Module253 | 13 | 67 | GO:0009968 | biological_process | negative regulation of signal transduction | 0.023794413 | 1 | 36 |
Module253 | 13 | 68 | GO:0005524 | molecular_function | ATP binding | 0.02380017 | 4 | 2216 |
Module253 | 13 | 69 | GO:0036094 | molecular_function | small molecule binding | 0.024173758 | 5 | 3451 |
Module253 | 13 | 70 | GO:0046854 | biological_process | phosphatidylinositol phosphorylation | 0.024448122 | 1 | 37 |
Module253 | 13 | 71 | GO:0046834 | biological_process | lipid phosphorylation | 0.024448122 | 1 | 37 |
Module253 | 13 | 72 | GO:0010648 | biological_process | negative regulation of cell communication | 0.024448122 | 1 | 37 |
Module253 | 13 | 73 | GO:0023057 | biological_process | negative regulation of signaling | 0.024448122 | 1 | 37 |
Module253 | 13 | 74 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.024790139 | 2 | 460 |
Module253 | 13 | 75 | GO:0043412 | biological_process | macromolecule modification | 0.025318749 | 4 | 1854 |
Module253 | 13 | 76 | GO:0032559 | molecular_function | adenyl ribonucleotide binding | 0.026298626 | 4 | 2282 |
Module253 | 13 | 77 | GO:0030554 | molecular_function | adenyl nucleotide binding | 0.026455272 | 4 | 2286 |
Module253 | 13 | 78 | GO:0098542 | biological_process | defense response to other organism | 0.027045776 | 2 | 396 |
Module253 | 13 | 79 | GO:0000325 | cellular_component | plant-type vacuole | 0.029277393 | 1 | 104 |
Module253 | 13 | 80 | GO:0009787 | biological_process | regulation of abscisic acid-activated signaling pathway | 0.029663803 | 1 | 45 |
Module253 | 13 | 81 | GO:1901419 | biological_process | regulation of response to alcohol | 0.029663803 | 1 | 45 |
Module253 | 13 | 82 | GO:0048573 | biological_process | photoperiodism, flowering | 0.031613284 | 1 | 48 |
Module253 | 13 | 83 | GO:0035639 | molecular_function | purine ribonucleoside triphosphate binding | 0.034696249 | 4 | 2478 |
Module253 | 13 | 84 | GO:0044238 | biological_process | primary metabolic process | 0.036789172 | 8 | 7365 |
Module253 | 13 | 85 | GO:0009637 | biological_process | response to blue light | 0.036794889 | 1 | 56 |
Module253 | 13 | 86 | GO:0032550 | molecular_function | purine ribonucleoside binding | 0.037863965 | 4 | 2544 |
Module253 | 13 | 87 | GO:0032555 | molecular_function | purine ribonucleotide binding | 0.037863965 | 4 | 2544 |
Module253 | 13 | 88 | GO:0001883 | molecular_function | purine nucleoside binding | 0.037863965 | 4 | 2544 |
Module253 | 13 | 89 | GO:0032549 | molecular_function | ribonucleoside binding | 0.038210212 | 4 | 2551 |
Module253 | 13 | 90 | GO:0017076 | molecular_function | purine nucleotide binding | 0.038259837 | 4 | 2552 |
Module253 | 13 | 91 | GO:0001882 | molecular_function | nucleoside binding | 0.038259837 | 4 | 2552 |
Module253 | 13 | 92 | GO:0051254 | biological_process | positive regulation of RNA metabolic process | 0.039376438 | 1 | 60 |
Module253 | 13 | 93 | GO:0045893 | biological_process | positive regulation of transcription, DNA-templated | 0.039376438 | 1 | 60 |
Module253 | 13 | 94 | GO:1903508 | biological_process | positive regulation of nucleic acid-templated transcription | 0.039376438 | 1 | 60 |
Module253 | 13 | 95 | GO:1902680 | biological_process | positive regulation of RNA biosynthetic process | 0.039376438 | 1 | 60 |
Module253 | 13 | 96 | GO:0065008 | biological_process | regulation of biological quality | 0.03964779 | 2 | 487 |
Module253 | 13 | 97 | GO:0032553 | molecular_function | ribonucleotide binding | 0.039818346 | 4 | 2583 |
Module253 | 13 | 98 | GO:0009648 | biological_process | photoperiodism | 0.040020863 | 1 | 61 |
Module253 | 13 | 99 | GO:0097367 | molecular_function | carbohydrate derivative binding | 0.041155659 | 4 | 2609 |
Module253 | 13 | 100 | GO:0042803 | molecular_function | protein homodimerization activity | 0.04252763 | 1 | 79 |
Module253 | 13 | 101 | GO:0048509 | biological_process | regulation of meristem development | 0.042594724 | 1 | 65 |
Module253 | 13 | 102 | GO:0045935 | biological_process | positive regulation of nucleobase-containing compound metabolic process | 0.04323723 | 1 | 66 |
Module253 | 13 | 103 | GO:0048585 | biological_process | negative regulation of response to stimulus | 0.045162449 | 1 | 69 |
Module253 | 13 | 104 | GO:0040008 | biological_process | regulation of growth | 0.046444015 | 1 | 71 |
Module253 | 13 | 105 | GO:0010628 | biological_process | positive regulation of gene expression | 0.047084224 | 1 | 72 |
Module253 | 13 | 106 | GO:0010557 | biological_process | positive regulation of macromolecule biosynthetic process | 0.048363496 | 1 | 74 |
Module253 | 13 | 107 | GO:0031328 | biological_process | positive regulation of cellular biosynthetic process | 0.049641241 | 1 | 76 |
Module253 | 13 | 108 | GO:0009738 | biological_process | abscisic acid-activated signaling pathway | 0.049641241 | 1 | 76 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
hb54 | hb120 | 0.0397 |
hb120 | GRMZM2G129585 | 0.0366 |
hb120 | GRMZM2G416156 | 0.0389 |
GRMZM2G070279 | GRMZM2G129018 | 0.0358 |
ivr2 | GRMZM2G412601 | 0.0411 |
GRMZM2G101000 | GRMZM2G330049 | 0.0413 |
GRMZM2G129018 | GRMZM2G330049 | 0.1031 |
GRMZM2G129018 | GRMZM2G412601 | 0.0497 |
GRMZM2G129018 | GRMZM2G416156 | 0.0375 |
GRMZM2G129018 | GRMZM2G429940 | 0.0549 |
GRMZM2G330049 | GRMZM2G429940 | 0.0534 |
GRMZM2G416156 | GRMZM2G425482 | 0.0725 |
GRMZM2G416156 | GRMZM2G429940 | 0.0376 |
GRMZM2G429940 | GRMZM2G061202 | 0.0409 |