This page contains information for Module255, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G046576 | spr9 | Module255 | AT3G49100 | AT3G49100 | Signal recognition particle, SRP9/SRP14 subunit | ||
GRMZM2G058407 | Module255 | AT3G49100 | AT3G49100 | Signal recognition particle, SRP9/SRP14 subunit | |||
GRMZM2G102903 | Module255 | AT3G17440 | NPSN13 | novel plant snare 13 | novel plant snare 13 | ||
GRMZM2G016827 | Module255 | AT2G25280 | AT2G25280 | ||||
GRMZM2G103266 | IDP441 | Module255 | AT1G50380 | AT1G50380 | Prolyl oligopeptidase family protein | ||
GRMZM2G120517 | Module255 | AT4G08390 | SAPX | stromal ascorbate peroxidase | stromal ascorbate peroxidase | ||
GRMZM2G384339 | hsftf22 | Module255 | AT5G16820 | HSF3 | heat shock factor 3 | heat shock factor 3 | HSF |
GRMZM2G401934 | thi3 | Module255 | AT1G22940 | TH1 | THIAMINE REQUIRING 1 | thiamin biosynthesis protein, putative | |
GRMZM2G406074 | Module255 | AT3G10620 | NUDX26 | nudix hydrolase homolog 26 | nudix hydrolase homolog 26 | ||
GRMZM2G109348 | Module255 | AT3G49590 | ATG13 | autophagy-related 13 | Autophagy-related protein 13 | ||
GRMZM2G180509 | Module255 | AT5G67540 | AT5G67540 | Arabinanase/levansucrase/invertase | |||
GRMZM2G438551 | psei1 | Module255 | AT3G12490 | CYSB | cystatin B | cystatin B | |
GRMZM2G167245 | Module255 | AT1G01240 | AT1G01240 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module255 | 13 | 1 | GO:0045900 | biological_process | negative regulation of translational elongation | 3.08E-07 | 2 | 2 |
Module255 | 13 | 2 | GO:0005786 | cellular_component | signal recognition particle, endoplasmic reticulum targeting | 3.88E-06 | 2 | 4 |
Module255 | 13 | 3 | GO:0051248 | biological_process | negative regulation of protein metabolic process | 4.40E-06 | 3 | 59 |
Module255 | 13 | 4 | GO:0032269 | biological_process | negative regulation of cellular protein metabolic process | 4.40E-06 | 3 | 59 |
Module255 | 13 | 5 | GO:0006448 | biological_process | regulation of translational elongation | 2.03E-05 | 2 | 12 |
Module255 | 13 | 6 | GO:0008312 | molecular_function | 7S RNA binding | 2.20E-05 | 2 | 12 |
Module255 | 13 | 7 | GO:0006613 | biological_process | cotranslational protein targeting to membrane | 2.40E-05 | 2 | 13 |
Module255 | 13 | 8 | GO:0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane | 2.40E-05 | 2 | 13 |
Module255 | 13 | 9 | GO:0045047 | biological_process | protein targeting to ER | 3.69E-05 | 2 | 16 |
Module255 | 13 | 10 | GO:0072599 | biological_process | establishment of protein localization to endoplasmic reticulum | 3.69E-05 | 2 | 16 |
Module255 | 13 | 11 | GO:0048500 | cellular_component | signal recognition particle | 5.02E-05 | 2 | 13 |
Module255 | 13 | 12 | GO:0070972 | biological_process | protein localization to endoplasmic reticulum | 8.46E-05 | 2 | 24 |
Module255 | 13 | 13 | GO:0006612 | biological_process | protein targeting to membrane | 8.46E-05 | 2 | 24 |
Module255 | 13 | 14 | GO:0031324 | biological_process | negative regulation of cellular metabolic process | 9.14E-05 | 3 | 162 |
Module255 | 13 | 15 | GO:0010605 | biological_process | negative regulation of macromolecule metabolic process | 0.000100004 | 3 | 167 |
Module255 | 13 | 16 | GO:0032268 | biological_process | regulation of cellular protein metabolic process | 0.000105436 | 3 | 170 |
Module255 | 13 | 17 | GO:0051246 | biological_process | regulation of protein metabolic process | 0.000127001 | 3 | 181 |
Module255 | 13 | 18 | GO:0034249 | biological_process | negative regulation of cellular amide metabolic process | 0.000133038 | 2 | 30 |
Module255 | 13 | 19 | GO:0017148 | biological_process | negative regulation of translation | 0.000133038 | 2 | 30 |
Module255 | 13 | 20 | GO:0090150 | biological_process | establishment of protein localization to membrane | 0.00017137 | 2 | 34 |
Module255 | 13 | 21 | GO:0072657 | biological_process | protein localization to membrane | 0.00017137 | 2 | 34 |
Module255 | 13 | 22 | GO:0048523 | biological_process | negative regulation of cellular process | 0.000314463 | 3 | 246 |
Module255 | 13 | 23 | GO:0009892 | biological_process | negative regulation of metabolic process | 0.000509789 | 3 | 290 |
Module255 | 13 | 24 | GO:0006414 | biological_process | translational elongation | 0.000610365 | 2 | 64 |
Module255 | 13 | 25 | GO:0044802 | biological_process | single-organism membrane organization | 0.000729863 | 2 | 70 |
Module255 | 13 | 26 | GO:0034248 | biological_process | regulation of cellular amide metabolic process | 0.000952183 | 2 | 80 |
Module255 | 13 | 27 | GO:0006417 | biological_process | regulation of translation | 0.000952183 | 2 | 80 |
Module255 | 13 | 28 | GO:0061024 | biological_process | membrane organization | 0.001124908 | 2 | 87 |
Module255 | 13 | 29 | GO:0010558 | biological_process | negative regulation of macromolecule biosynthetic process | 0.00163304 | 2 | 105 |
Module255 | 13 | 30 | GO:2000113 | biological_process | negative regulation of cellular macromolecule biosynthetic process | 0.00163304 | 2 | 105 |
Module255 | 13 | 31 | GO:0072594 | biological_process | establishment of protein localization to organelle | 0.00175836 | 2 | 109 |
Module255 | 13 | 32 | GO:0048519 | biological_process | negative regulation of biological process | 0.001815613 | 3 | 449 |
Module255 | 13 | 33 | GO:0031327 | biological_process | negative regulation of cellular biosynthetic process | 0.001822698 | 2 | 111 |
Module255 | 13 | 34 | GO:0010608 | biological_process | posttranscriptional regulation of gene expression | 0.001855286 | 2 | 112 |
Module255 | 13 | 35 | GO:0009890 | biological_process | negative regulation of biosynthetic process | 0.001921298 | 2 | 114 |
Module255 | 13 | 36 | GO:0051172 | biological_process | negative regulation of nitrogen compound metabolic process | 0.001954722 | 2 | 115 |
Module255 | 13 | 37 | GO:0006605 | biological_process | protein targeting | 0.002022403 | 2 | 117 |
Module255 | 13 | 38 | GO:0033365 | biological_process | protein localization to organelle | 0.002126005 | 2 | 120 |
Module255 | 13 | 39 | GO:0010629 | biological_process | negative regulation of gene expression | 0.002377419 | 2 | 127 |
Module255 | 13 | 40 | GO:1902580 | biological_process | single-organism cellular localization | 0.002720451 | 2 | 136 |
Module255 | 13 | 41 | GO:0042724 | biological_process | thiamine-containing compound biosynthetic process | 0.002965157 | 1 | 5 |
Module255 | 13 | 42 | GO:0009228 | biological_process | thiamine biosynthetic process | 0.002965157 | 1 | 5 |
Module255 | 13 | 43 | GO:0034432 | molecular_function | bis(5'-adenosyl)-pentaphosphatase activity | 0.003044694 | 1 | 5 |
Module255 | 13 | 44 | GO:0042723 | biological_process | thiamine-containing compound metabolic process | 0.004149064 | 1 | 7 |
Module255 | 13 | 45 | GO:0006772 | biological_process | thiamine metabolic process | 0.004149064 | 1 | 7 |
Module255 | 13 | 46 | GO:0004551 | molecular_function | nucleotide diphosphatase activity | 0.004260234 | 1 | 7 |
Module255 | 13 | 47 | GO:0016482 | biological_process | cytoplasmic transport | 0.004559872 | 2 | 177 |
Module255 | 13 | 48 | GO:0034605 | biological_process | cellular response to heat | 0.004740557 | 1 | 8 |
Module255 | 13 | 49 | GO:0070417 | biological_process | cellular response to cold | 0.006513189 | 1 | 11 |
Module255 | 13 | 50 | GO:1902582 | biological_process | single-organism intracellular transport | 0.007461523 | 2 | 228 |
Module255 | 13 | 51 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.007890318 | 4 | 1527 |
Module255 | 13 | 52 | GO:0004869 | molecular_function | cysteine-type endopeptidase inhibitor activity | 0.007898854 | 1 | 13 |
Module255 | 13 | 53 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.007983985 | 4 | 1532 |
Module255 | 13 | 54 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.008405239 | 4 | 1554 |
Module255 | 13 | 55 | GO:0010466 | biological_process | negative regulation of peptidase activity | 0.010050168 | 1 | 17 |
Module255 | 13 | 56 | GO:0052547 | biological_process | regulation of peptidase activity | 0.010050168 | 1 | 17 |
Module255 | 13 | 57 | GO:0051346 | biological_process | negative regulation of hydrolase activity | 0.01122671 | 1 | 19 |
Module255 | 13 | 58 | GO:0006886 | biological_process | intracellular protein transport | 0.012576403 | 2 | 299 |
Module255 | 13 | 59 | GO:0071462 | biological_process | cellular response to water stimulus | 0.012989229 | 1 | 22 |
Module255 | 13 | 60 | GO:0045861 | biological_process | negative regulation of proteolysis | 0.012989229 | 1 | 22 |
Module255 | 13 | 61 | GO:0042631 | biological_process | cellular response to water deprivation | 0.012989229 | 1 | 22 |
Module255 | 13 | 62 | GO:0019222 | biological_process | regulation of metabolic process | 0.013142095 | 4 | 1761 |
Module255 | 13 | 63 | GO:0030162 | biological_process | regulation of proteolysis | 0.013576124 | 1 | 23 |
Module255 | 13 | 64 | GO:0034613 | biological_process | cellular protein localization | 0.014318155 | 2 | 320 |
Module255 | 13 | 65 | GO:0070727 | biological_process | cellular macromolecule localization | 0.01589127 | 2 | 338 |
Module255 | 13 | 66 | GO:0051336 | biological_process | regulation of hydrolase activity | 0.017675846 | 1 | 30 |
Module255 | 13 | 67 | GO:0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor | 0.018743028 | 1 | 31 |
Module255 | 13 | 68 | GO:0046907 | biological_process | intracellular transport | 0.020939961 | 2 | 391 |
Module255 | 13 | 69 | GO:0015031 | biological_process | protein transport | 0.025146977 | 2 | 431 |
Module255 | 13 | 70 | GO:0045184 | biological_process | establishment of protein localization | 0.025585824 | 2 | 435 |
Module255 | 13 | 71 | GO:0042364 | biological_process | water-soluble vitamin biosynthetic process | 0.025830587 | 1 | 44 |
Module255 | 13 | 72 | GO:0072528 | biological_process | pyrimidine-containing compound biosynthetic process | 0.025830587 | 1 | 44 |
Module255 | 13 | 73 | GO:0006767 | biological_process | water-soluble vitamin metabolic process | 0.026990701 | 1 | 46 |
Module255 | 13 | 74 | GO:0008104 | biological_process | protein localization | 0.02771442 | 2 | 454 |
Module255 | 13 | 75 | GO:0004866 | molecular_function | endopeptidase inhibitor activity | 0.028292609 | 1 | 47 |
Module255 | 13 | 76 | GO:0061134 | molecular_function | peptidase regulator activity | 0.028292609 | 1 | 47 |
Module255 | 13 | 77 | GO:0061135 | molecular_function | endopeptidase regulator activity | 0.028292609 | 1 | 47 |
Module255 | 13 | 78 | GO:0030414 | molecular_function | peptidase inhibitor activity | 0.028292609 | 1 | 47 |
Module255 | 13 | 79 | GO:0070008 | molecular_function | serine-type exopeptidase activity | 0.030073815 | 1 | 50 |
Module255 | 13 | 80 | GO:0009110 | biological_process | vitamin biosynthetic process | 0.030463792 | 1 | 52 |
Module255 | 13 | 81 | GO:0051649 | biological_process | establishment of localization in cell | 0.030862326 | 2 | 481 |
Module255 | 13 | 82 | GO:0072527 | biological_process | pyrimidine-containing compound metabolic process | 0.031041585 | 1 | 53 |
Module255 | 13 | 83 | GO:0006766 | biological_process | vitamin metabolic process | 0.031619076 | 1 | 54 |
Module255 | 13 | 84 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.035687099 | 3 | 1315 |
Module255 | 13 | 85 | GO:0051641 | biological_process | cellular localization | 0.036675364 | 2 | 528 |
Module255 | 13 | 86 | GO:0050794 | biological_process | regulation of cellular process | 0.0372927 | 4 | 2381 |
Module255 | 13 | 87 | GO:0033036 | biological_process | macromolecule localization | 0.038616891 | 2 | 543 |
Module255 | 13 | 88 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.040014001 | 3 | 1374 |
Module255 | 13 | 89 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.040014001 | 3 | 1374 |
Module255 | 13 | 90 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.042553969 | 3 | 1407 |
Module255 | 13 | 91 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.042710669 | 3 | 1409 |
Module255 | 13 | 92 | GO:0010468 | biological_process | regulation of gene expression | 0.043103799 | 3 | 1414 |
Module255 | 13 | 93 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.04373691 | 3 | 1422 |
Module255 | 13 | 94 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.045428241 | 4 | 2526 |
Module255 | 13 | 95 | GO:0008238 | molecular_function | exopeptidase activity | 0.049474044 | 1 | 83 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
spr9 | GRMZM2G058407 | 0.0424 |
spr9 | IDP441 | 0.0372 |
spr9 | GRMZM2G120517 | 0.0425 |
GRMZM2G102903 | GRMZM2G016827 | 0.037 |
GRMZM2G016827 | GRMZM2G406074 | 0.0386 |
GRMZM2G120517 | hsftf22 | 0.0391 |
GRMZM2G120517 | thi3 | 0.0401 |
GRMZM2G120517 | GRMZM2G406074 | 0.0602 |
hsftf22 | GRMZM2G406074 | 0.043 |
GRMZM2G406074 | GRMZM2G109348 | 0.0361 |
GRMZM2G406074 | GRMZM2G180509 | 0.0546 |
GRMZM2G406074 | psei1 | 0.067 |
psei1 | GRMZM2G167245 | 0.0386 |