This page contains information for Module258, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G084465 | pza03735 | Module258 | AT5G02960 | AT5G02960 | Ribosomal protein S12/S23 family protein | ||
GRMZM2G081102 | Module258 | AT3G49010 | BBC1 | breast basic conserved 1 | breast basic conserved 1 | ||
GRMZM2G122039 | Module258 | AT1G15120 | AT1G15120 | Ubiquinol-cytochrome C reductase hinge protein | |||
GRMZM2G009894 | Module258 | AT3G06680 | AT3G06680 | Ribosomal L29e protein family | |||
GRMZM2G132121 | rps27c | Module258 | AT3G61110 | RS27A | ribosomal protein S27 | ribosomal protein S27 | |
GRMZM2G066222 | rps27 | Module258 | AT3G61110 | RS27A | ribosomal protein S27 | ribosomal protein S27 | |
GRMZM2G147791 | Module258 | AT3G06680 | AT3G06680 | Ribosomal L29e protein family | |||
GRMZM2G032564 | Module258 | AT1G26880 | AT1G26880 | Ribosomal protein L34e superfamily protein | |||
GRMZM2G149975 | Module258 | AT3G06700 | AT3G06700 | Ribosomal L29e protein family | |||
GRMZM2G068496 | Module258 | AT3G06680 | AT3G06680 | Ribosomal L29e protein family | |||
GRMZM2G156027 | Module258 | AT4G31985 | AT4G31985 | Ribosomal protein L39 family protein | |||
GRMZM5G850966 | Module258 | AT3G53740 | AT3G53740 | Ribosomal protein L36e family protein | |||
GRMZM5G863656 | Module258 | AT4G34670 | AT4G34670 | Ribosomal protein S3Ae |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module258 | 13 | 1 | GO:0003735 | molecular_function | structural constituent of ribosome | 2.47E-16 | 11 | 505 |
Module258 | 13 | 2 | GO:0005198 | molecular_function | structural molecule activity | 1.66E-15 | 11 | 600 |
Module258 | 13 | 3 | GO:0006412 | biological_process | translation | 2.64E-13 | 11 | 781 |
Module258 | 13 | 4 | GO:0043043 | biological_process | peptide biosynthetic process | 2.95E-13 | 11 | 789 |
Module258 | 13 | 5 | GO:0005840 | cellular_component | ribosome | 3.17E-13 | 11 | 623 |
Module258 | 13 | 6 | GO:0006518 | biological_process | peptide metabolic process | 4.05E-13 | 11 | 812 |
Module258 | 13 | 7 | GO:0043604 | biological_process | amide biosynthetic process | 4.63E-13 | 11 | 822 |
Module258 | 13 | 8 | GO:0043603 | biological_process | cellular amide metabolic process | 8.32E-13 | 11 | 867 |
Module258 | 13 | 9 | GO:0044391 | cellular_component | ribosomal subunit | 9.36E-13 | 9 | 273 |
Module258 | 13 | 10 | GO:1990904 | cellular_component | ribonucleoprotein complex | 1.59E-12 | 11 | 721 |
Module258 | 13 | 11 | GO:0030529 | cellular_component | intracellular ribonucleoprotein complex | 1.59E-12 | 11 | 721 |
Module258 | 13 | 12 | GO:0022626 | cellular_component | cytosolic ribosome | 3.52E-12 | 9 | 316 |
Module258 | 13 | 13 | GO:0044445 | cellular_component | cytosolic part | 7.97E-12 | 9 | 346 |
Module258 | 13 | 14 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 2.71E-11 | 12 | 1779 |
Module258 | 13 | 15 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 8.04E-11 | 11 | 1315 |
Module258 | 13 | 16 | GO:0043228 | cellular_component | non-membrane-bounded organelle | 1.34E-09 | 11 | 1333 |
Module258 | 13 | 17 | GO:0043232 | cellular_component | intracellular non-membrane-bounded organelle | 1.34E-09 | 11 | 1333 |
Module258 | 13 | 18 | GO:0022625 | cellular_component | cytosolic large ribosomal subunit | 3.11E-09 | 6 | 133 |
Module258 | 13 | 19 | GO:0015934 | cellular_component | large ribosomal subunit | 1.06E-08 | 6 | 163 |
Module258 | 13 | 20 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 9.04E-08 | 11 | 2507 |
Module258 | 13 | 21 | GO:0010467 | biological_process | gene expression | 9.23E-08 | 11 | 2512 |
Module258 | 13 | 22 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 9.81E-08 | 11 | 2526 |
Module258 | 13 | 23 | GO:0009059 | biological_process | macromolecule biosynthetic process | 9.89E-08 | 11 | 2528 |
Module258 | 13 | 24 | GO:0032991 | cellular_component | macromolecular complex | 1.01E-07 | 11 | 1984 |
Module258 | 13 | 25 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 1.08E-07 | 12 | 3545 |
Module258 | 13 | 26 | GO:0005730 | cellular_component | nucleolus | 1.42E-07 | 7 | 442 |
Module258 | 13 | 27 | GO:0044267 | biological_process | cellular protein metabolic process | 2.79E-07 | 11 | 2783 |
Module258 | 13 | 28 | GO:0006807 | biological_process | nitrogen compound metabolic process | 3.28E-07 | 12 | 3887 |
Module258 | 13 | 29 | GO:0005829 | cellular_component | cytosol | 1.14E-06 | 9 | 1321 |
Module258 | 13 | 30 | GO:0031981 | cellular_component | nuclear lumen | 1.16E-06 | 7 | 601 |
Module258 | 13 | 31 | GO:0019538 | biological_process | protein metabolic process | 1.44E-06 | 11 | 3241 |
Module258 | 13 | 32 | GO:0070013 | cellular_component | intracellular organelle lumen | 2.32E-06 | 7 | 666 |
Module258 | 13 | 33 | GO:0043233 | cellular_component | organelle lumen | 2.32E-06 | 7 | 666 |
Module258 | 13 | 34 | GO:0031974 | cellular_component | membrane-enclosed lumen | 2.51E-06 | 7 | 674 |
Module258 | 13 | 35 | GO:0044249 | biological_process | cellular biosynthetic process | 3.77E-06 | 11 | 3546 |
Module258 | 13 | 36 | GO:1901576 | biological_process | organic substance biosynthetic process | 4.51E-06 | 11 | 3606 |
Module258 | 13 | 37 | GO:0044428 | cellular_component | nuclear part | 4.62E-06 | 7 | 738 |
Module258 | 13 | 38 | GO:0009058 | biological_process | biosynthetic process | 7.06E-06 | 11 | 3760 |
Module258 | 13 | 39 | GO:0022627 | cellular_component | cytosolic small ribosomal subunit | 6.41E-05 | 3 | 72 |
Module258 | 13 | 40 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.000132969 | 11 | 4961 |
Module258 | 13 | 41 | GO:0044446 | cellular_component | intracellular organelle part | 0.000146975 | 10 | 3055 |
Module258 | 13 | 42 | GO:0044422 | cellular_component | organelle part | 0.000149228 | 10 | 3060 |
Module258 | 13 | 43 | GO:0015935 | cellular_component | small ribosomal subunit | 0.000232535 | 3 | 111 |
Module258 | 13 | 44 | GO:0044444 | cellular_component | cytoplasmic part | 0.000329003 | 12 | 5412 |
Module258 | 13 | 45 | GO:0043170 | biological_process | macromolecule metabolic process | 0.000377919 | 11 | 5482 |
Module258 | 13 | 46 | GO:0044237 | biological_process | cellular metabolic process | 0.000420548 | 12 | 7053 |
Module258 | 13 | 47 | GO:0044238 | biological_process | primary metabolic process | 0.000707253 | 12 | 7365 |
Module258 | 13 | 48 | GO:0005737 | cellular_component | cytoplasm | 0.000928044 | 12 | 5900 |
Module258 | 13 | 49 | GO:0071704 | biological_process | organic substance metabolic process | 0.001402323 | 12 | 7797 |
Module258 | 13 | 50 | GO:0043229 | cellular_component | intracellular organelle | 0.003998888 | 12 | 6663 |
Module258 | 13 | 51 | GO:0043226 | cellular_component | organelle | 0.004013328 | 12 | 6665 |
Module258 | 13 | 52 | GO:0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c | 0.007988124 | 1 | 9 |
Module258 | 13 | 53 | GO:0005634 | cellular_component | nucleus | 0.008735737 | 7 | 2423 |
Module258 | 13 | 54 | GO:0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity | 0.008746035 | 1 | 12 |
Module258 | 13 | 55 | GO:0016681 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor | 0.008746035 | 1 | 12 |
Module258 | 13 | 56 | GO:0009987 | biological_process | cellular process | 0.012466396 | 12 | 9353 |
Module258 | 13 | 57 | GO:0009506 | cellular_component | plasmodesma | 0.018752476 | 3 | 520 |
Module258 | 13 | 58 | GO:0055044 | cellular_component | symplast | 0.018752476 | 3 | 520 |
Module258 | 13 | 59 | GO:0005911 | cellular_component | cell-cell junction | 0.018752476 | 3 | 520 |
Module258 | 13 | 60 | GO:0030054 | cellular_component | cell junction | 0.018752476 | 3 | 520 |
Module258 | 13 | 61 | GO:0008152 | biological_process | metabolic process | 0.022542312 | 12 | 9826 |
Module258 | 13 | 62 | GO:0042775 | biological_process | mitochondrial ATP synthesis coupled electron transport | 0.02291742 | 1 | 26 |
Module258 | 13 | 63 | GO:0044424 | cellular_component | intracellular part | 0.02325519 | 12 | 7715 |
Module258 | 13 | 64 | GO:0016679 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors | 0.027455738 | 1 | 38 |
Module258 | 13 | 65 | GO:0005618 | cellular_component | cell wall | 0.030060812 | 3 | 622 |
Module258 | 13 | 66 | GO:0030312 | cellular_component | external encapsulating structure | 0.030186588 | 3 | 623 |
Module258 | 13 | 67 | GO:0042773 | biological_process | ATP synthesis coupled electron transport | 0.032467504 | 1 | 37 |
Module258 | 13 | 68 | GO:0006119 | biological_process | oxidative phosphorylation | 0.032467504 | 1 | 37 |
Module258 | 13 | 69 | GO:0005622 | cellular_component | intracellular | 0.041486781 | 12 | 8096 |
Module258 | 13 | 70 | GO:0022904 | biological_process | respiratory electron transport chain | 0.041931954 | 1 | 48 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
pza03735 | GRMZM2G081102 | 0.0369 |
pza03735 | GRMZM2G147791 | 0.0353 |
GRMZM2G122039 | GRMZM2G009894 | 0.0357 |
GRMZM2G009894 | GRMZM2G147791 | 0.0483 |
rps27c | rps27 | 0.0388 |
rps27 | GRMZM2G147791 | 0.035 |
GRMZM2G147791 | GRMZM2G032564 | 0.0408 |
GRMZM2G147791 | GRMZM2G149975 | 0.0519 |
GRMZM2G147791 | GRMZM2G156027 | 0.0396 |
GRMZM2G147791 | GRMZM5G850966 | 0.0407 |
GRMZM2G147791 | GRMZM5G863656 | 0.0376 |
GRMZM2G149975 | GRMZM2G068496 | 0.0381 |