This page contains information for Module259, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G030106 | Module259 | AT5G63420 | emb2746 | embryo defective 2746 | RNA-metabolising metallo-beta-lactamase family protein | Trihelix | |
GRMZM2G132796 | Module259 | AT1G26110 | DCP5 | decapping 5 | decapping 5 | ||
GRMZM2G125352 | Module259 | AT3G18770 | AT3G18770 | Autophagy-related protein 13 | |||
GRMZM2G087619 | Module259 | AT1G77600 | AT1G77600 | ARM repeat superfamily protein | |||
GRMZM2G315230 | Module259 | AT2G26310 | FAP2 | fatty-acid-binding protein 2 | Chalcone-flavanone isomerase family protein | ||
GRMZM2G042607 | Module259 | AT1G26810 | GALT1 | galactosyltransferase1 | galactosyltransferase1 | ||
GRMZM2G322047 | Module259 | AT4G16745 | AT4G16745 | Exostosin family protein | |||
GRMZM2G325679 | Module259 | AT5G53060 | RCF3 | regulator of CBF gene expression 3 | RNA-binding KH domain-containing protein | ||
GRMZM2G047777 | Module259 | AT3G17500 | AT3G17500 | F-box family protein | |||
GRMZM2G411746 | Module259 | AT3G03773 | AT3G03773 | HSP20-like chaperones superfamily protein | |||
GRMZM2G358768 | Module259 | AT1G76280 | AT1G76280 | Tetratricopeptide repeat (TPR)-like superfamily protein | |||
GRMZM5G838938 | Module259 | ||||||
GRMZM5G838579 | Module259 | AT3G13870 | RHD3 | ROOT HAIR DEFECTIVE 3 | Root hair defective 3 GTP-binding protein (RHD3) |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module259 | 13 | 1 | GO:0033962 | biological_process | cytoplasmic mRNA processing body assembly | 0.000296813 | 1 | 2 |
Module259 | 13 | 2 | GO:0031086 | biological_process | nuclear-transcribed mRNA catabolic process, deadenylation-independent decay | 0.000890307 | 1 | 6 |
Module259 | 13 | 3 | GO:0031087 | biological_process | deadenylation-independent decapping of nuclear-transcribed mRNA | 0.000890307 | 1 | 6 |
Module259 | 13 | 4 | GO:0005504 | molecular_function | fatty acid binding | 0.001462434 | 1 | 3 |
Module259 | 13 | 5 | GO:0000956 | biological_process | nuclear-transcribed mRNA catabolic process | 0.001631926 | 1 | 11 |
Module259 | 13 | 6 | GO:0070925 | biological_process | organelle assembly | 0.002076766 | 1 | 14 |
Module259 | 13 | 7 | GO:0006402 | biological_process | mRNA catabolic process | 0.002076766 | 1 | 14 |
Module259 | 13 | 8 | GO:0022618 | biological_process | ribonucleoprotein complex assembly | 0.002225023 | 1 | 15 |
Module259 | 13 | 9 | GO:0071826 | biological_process | ribonucleoprotein complex subunit organization | 0.002225023 | 1 | 15 |
Module259 | 13 | 10 | GO:0044089 | biological_process | positive regulation of cellular component biogenesis | 0.002669731 | 1 | 18 |
Module259 | 13 | 11 | GO:0006401 | biological_process | RNA catabolic process | 0.003558848 | 1 | 24 |
Module259 | 13 | 12 | GO:0010638 | biological_process | positive regulation of organelle organization | 0.003855132 | 1 | 26 |
Module259 | 13 | 13 | GO:0035250 | molecular_function | UDP-galactosyltransferase activity | 0.003895664 | 1 | 8 |
Module259 | 13 | 14 | GO:0034249 | biological_process | negative regulation of cellular amide metabolic process | 0.004447569 | 1 | 30 |
Module259 | 13 | 15 | GO:0017148 | biological_process | negative regulation of translation | 0.004447569 | 1 | 30 |
Module259 | 13 | 16 | GO:0051130 | biological_process | positive regulation of cellular component organization | 0.004743721 | 1 | 32 |
Module259 | 13 | 17 | GO:0090305 | biological_process | nucleic acid phosphodiester bond hydrolysis | 0.005335893 | 1 | 36 |
Module259 | 13 | 18 | GO:0034655 | biological_process | nucleobase-containing compound catabolic process | 0.005335893 | 1 | 36 |
Module259 | 13 | 19 | GO:0033293 | molecular_function | monocarboxylic acid binding | 0.005353111 | 1 | 11 |
Module259 | 13 | 20 | GO:0044087 | biological_process | regulation of cellular component biogenesis | 0.005483908 | 1 | 37 |
Module259 | 13 | 21 | GO:0016872 | molecular_function | intramolecular lyase activity | 0.008262408 | 1 | 17 |
Module259 | 13 | 22 | GO:0051248 | biological_process | negative regulation of protein metabolic process | 0.008737463 | 1 | 59 |
Module259 | 13 | 23 | GO:0032269 | biological_process | negative regulation of cellular protein metabolic process | 0.008737463 | 1 | 59 |
Module259 | 13 | 24 | GO:0033043 | biological_process | regulation of organelle organization | 0.009328445 | 1 | 63 |
Module259 | 13 | 25 | GO:0046700 | biological_process | heterocycle catabolic process | 0.010214589 | 1 | 69 |
Module259 | 13 | 26 | GO:0044270 | biological_process | cellular nitrogen compound catabolic process | 0.010362241 | 1 | 70 |
Module259 | 13 | 27 | GO:0034248 | biological_process | regulation of cellular amide metabolic process | 0.011838155 | 1 | 80 |
Module259 | 13 | 28 | GO:0006486 | biological_process | protein glycosylation | 0.011838155 | 1 | 80 |
Module259 | 13 | 29 | GO:0006417 | biological_process | regulation of translation | 0.011838155 | 1 | 80 |
Module259 | 13 | 30 | GO:0009100 | biological_process | glycoprotein metabolic process | 0.011838155 | 1 | 80 |
Module259 | 13 | 31 | GO:0009101 | biological_process | glycoprotein biosynthetic process | 0.011838155 | 1 | 80 |
Module259 | 13 | 32 | GO:0043413 | biological_process | macromolecule glycosylation | 0.011838155 | 1 | 80 |
Module259 | 13 | 33 | GO:0019439 | biological_process | aromatic compound catabolic process | 0.012723176 | 1 | 86 |
Module259 | 13 | 34 | GO:0070085 | biological_process | glycosylation | 0.013165537 | 1 | 89 |
Module259 | 13 | 35 | GO:1901361 | biological_process | organic cyclic compound catabolic process | 0.013902586 | 1 | 94 |
Module259 | 13 | 36 | GO:0022613 | biological_process | ribonucleoprotein complex biogenesis | 0.014049962 | 1 | 95 |
Module259 | 13 | 37 | GO:0010558 | biological_process | negative regulation of macromolecule biosynthetic process | 0.015523123 | 1 | 105 |
Module259 | 13 | 38 | GO:2000113 | biological_process | negative regulation of cellular macromolecule biosynthetic process | 0.015523123 | 1 | 105 |
Module259 | 13 | 39 | GO:0051128 | biological_process | regulation of cellular component organization | 0.015670379 | 1 | 106 |
Module259 | 13 | 40 | GO:0031327 | biological_process | negative regulation of cellular biosynthetic process | 0.016406491 | 1 | 111 |
Module259 | 13 | 41 | GO:0016071 | biological_process | mRNA metabolic process | 0.016406491 | 1 | 111 |
Module259 | 13 | 42 | GO:0010608 | biological_process | posttranscriptional regulation of gene expression | 0.016553681 | 1 | 112 |
Module259 | 13 | 43 | GO:0009890 | biological_process | negative regulation of biosynthetic process | 0.016848027 | 1 | 114 |
Module259 | 13 | 44 | GO:0051172 | biological_process | negative regulation of nitrogen compound metabolic process | 0.016995183 | 1 | 115 |
Module259 | 13 | 45 | GO:0010629 | biological_process | negative regulation of gene expression | 0.018760201 | 1 | 127 |
Module259 | 13 | 46 | GO:0033692 | biological_process | cellular polysaccharide biosynthetic process | 0.019054216 | 1 | 129 |
Module259 | 13 | 47 | GO:0000271 | biological_process | polysaccharide biosynthetic process | 0.019642115 | 1 | 133 |
Module259 | 13 | 48 | GO:0031324 | biological_process | negative regulation of cellular metabolic process | 0.023899111 | 1 | 162 |
Module259 | 13 | 49 | GO:0008378 | molecular_function | galactosyltransferase activity | 0.024130836 | 1 | 50 |
Module259 | 13 | 50 | GO:0010605 | biological_process | negative regulation of macromolecule metabolic process | 0.024632139 | 1 | 167 |
Module259 | 13 | 51 | GO:0032268 | biological_process | regulation of cellular protein metabolic process | 0.025071824 | 1 | 170 |
Module259 | 13 | 52 | GO:0034637 | biological_process | cellular carbohydrate biosynthetic process | 0.025804412 | 1 | 175 |
Module259 | 13 | 53 | GO:0051246 | biological_process | regulation of protein metabolic process | 0.026683154 | 1 | 181 |
Module259 | 13 | 54 | GO:0048522 | biological_process | positive regulation of cellular process | 0.0275615 | 1 | 187 |
Module259 | 13 | 55 | GO:0044264 | biological_process | cellular polysaccharide metabolic process | 0.029463222 | 1 | 200 |
Module259 | 13 | 56 | GO:0016051 | biological_process | carbohydrate biosynthetic process | 0.033261082 | 1 | 226 |
Module259 | 13 | 57 | GO:0003723 | molecular_function | RNA binding | 0.033409053 | 2 | 611 |
Module259 | 13 | 58 | GO:0044265 | biological_process | cellular macromolecule catabolic process | 0.034428157 | 1 | 234 |
Module259 | 13 | 59 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.034597572 | 2 | 2507 |
Module259 | 13 | 60 | GO:0005976 | biological_process | polysaccharide metabolic process | 0.034865628 | 1 | 237 |
Module259 | 13 | 61 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.035179733 | 2 | 2528 |
Module259 | 13 | 62 | GO:0048523 | biological_process | negative regulation of cellular process | 0.036177447 | 1 | 246 |
Module259 | 13 | 63 | GO:0031406 | molecular_function | carboxylic acid binding | 0.03647631 | 1 | 76 |
Module259 | 13 | 64 | GO:0043177 | molecular_function | organic acid binding | 0.03647631 | 1 | 76 |
Module259 | 13 | 65 | GO:0042803 | molecular_function | protein homodimerization activity | 0.037891955 | 1 | 79 |
Module259 | 13 | 66 | GO:1901137 | biological_process | carbohydrate derivative biosynthetic process | 0.040543733 | 1 | 276 |
Module259 | 13 | 67 | GO:0034622 | biological_process | cellular macromolecular complex assembly | 0.041561107 | 1 | 283 |
Module259 | 13 | 68 | GO:0009892 | biological_process | negative regulation of metabolic process | 0.042577941 | 1 | 290 |
Module259 | 13 | 69 | GO:0044267 | biological_process | cellular protein metabolic process | 0.042636403 | 2 | 2783 |
Module259 | 13 | 70 | GO:0065003 | biological_process | macromolecular complex assembly | 0.046060132 | 1 | 314 |
Module259 | 13 | 71 | GO:0048518 | biological_process | positive regulation of biological process | 0.046060132 | 1 | 314 |
Module259 | 13 | 72 | GO:0044262 | biological_process | cellular carbohydrate metabolic process | 0.04678479 | 1 | 319 |
Module259 | 13 | 73 | GO:0009057 | biological_process | macromolecule catabolic process | 0.047943671 | 1 | 327 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G030106 | GRMZM2G322047 | 0.0356 |
GRMZM2G132796 | GRMZM2G125352 | 0.0367 |
GRMZM2G125352 | GRMZM2G411746 | 0.0414 |
GRMZM2G087619 | GRMZM2G411746 | 0.0581 |
GRMZM2G315230 | GRMZM2G042607 | 0.0361 |
GRMZM2G315230 | GRMZM2G322047 | 0.0505 |
GRMZM2G315230 | GRMZM2G411746 | 0.0401 |
GRMZM2G322047 | GRMZM2G411746 | 0.0388 |
GRMZM2G325679 | GRMZM2G047777 | 0.0396 |
GRMZM2G047777 | GRMZM2G411746 | 0.0362 |
GRMZM2G411746 | GRMZM2G358768 | 0.0366 |
GRMZM2G411746 | GRMZM5G838938 | 0.0562 |
GRMZM5G838938 | GRMZM5G838579 | 0.0362 |